******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11398.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:10239255-10239375 1.0000 120 chr2R:21611417-21611537 1.0000 120 chr2R:21648183-21648303 1.0000 120 chr2R:14488408-14488528 1.0000 120 chr2L:9775319-9775439 1.0000 120 chr3L:698904-699024 1.0000 120 chr3L:8865336-8865456 1.0000 120 chr2R:22158052-22158172 1.0000 120 chr3R:11352961-11353081 1.0000 120 chr3L:6217920-6218040 1.0000 120 chr2L:17204052-17204172 1.0000 120 chr2R:13152132-13152252 1.0000 120 chr2L:2888570-2888690 1.0000 120 chr3L:10858611-10858731 1.0000 120 chr2L:9497315-9497435 1.0000 120 chr3L:11492580-11492700 1.0000 120 chr2R:22540027-22540147 1.0000 120 chr3R:18412391-18412511 1.0000 120 chr2R:12916633-12916753 1.0000 120 chr3R:13817571-13817691 1.0000 120 chr3L:2468665-2468785 1.0000 120 chr3L:19618304-19618424 1.0000 120 chr3R:9762591-9762711 1.0000 120 chrX:15834394-15834514 1.0000 120 chr3R:14680524-14680644 1.0000 120 chr2R:13470258-13470378 1.0000 120 chr3L:11003049-11003169 1.0000 120 chr3L:12482395-12482515 1.0000 120 chrX:19839225-19839345 1.0000 120 chr2R:19845417-19845537 1.0000 120 chr3L:21476851-21476971 1.0000 120 chr3L:639589-639709 1.0000 120 chr2L:7544445-7544565 1.0000 120 chr3L:14028867-14028987 1.0000 120 chrX:6279185-6279305 1.0000 120 chr3L:483960-484080 1.0000 120 chr4:695171-695291 1.0000 120 chr3R:25660919-25661039 1.0000 120 chr3R:23445351-23445471 1.0000 120 chr2L:5303731-5303851 1.0000 120 chr2L:13838800-13838920 1.0000 120 chr3L:14549353-14549473 1.0000 120 chrX:772747-772867 1.0000 120 chr2R:7243825-7243945 1.0000 120 chr3L:11708368-11708488 1.0000 120 chr3L:6942741-6942861 1.0000 120 chr3R:15666140-15666260 1.0000 120 chr3R:5217178-5217298 1.0000 120 chr3R:7108245-7108365 1.0000 120 chr3R:18297529-18297649 1.0000 120 chr3R:20276115-20276235 1.0000 120 chr3R:30812089-30812209 1.0000 120 chr4:557472-557592 1.0000 120 chr3R:8664538-8664658 1.0000 120 chr2L:8415780-8415900 1.0000 120 chr2R:8060298-8060418 1.0000 120 chr3R:16276313-16276433 1.0000 120 chr2R:23668841-23668961 1.0000 120 chrX:6604842-6604962 1.0000 120 chr2L:20794055-20794175 1.0000 120 chr3L:224319-224439 1.0000 120 chrX:18837269-18837389 1.0000 120 chr3L:11489599-11489719 1.0000 120 chr3L:11358811-11358931 1.0000 120 chr3L:7859852-7859972 1.0000 120 chrX:17582784-17582904 1.0000 120 chr3L:15563540-15563660 1.0000 120 chr3L:4193875-4193995 1.0000 120 chr3L:14564538-14564658 1.0000 120 chr3L:15336669-15336789 1.0000 120 chr2R:8242701-8242821 1.0000 120 chr2L:7828911-7829031 1.0000 120 chr3L:12045668-12045788 1.0000 120 chr2R:16951623-16951743 1.0000 120 chr2R:24292834-24292954 1.0000 120 chr2L:20083549-20083669 1.0000 120 chr3R:21592190-21592310 1.0000 120 chr3L:10666809-10666929 1.0000 120 chr2L:564100-564220 1.0000 120 chr3R:4390140-4390260 1.0000 120 chr3L:19073296-19073416 1.0000 120 chr2L:20758364-20758484 1.0000 120 chr2R:17272607-17272727 1.0000 120 chrX:6638244-6638364 1.0000 120 chr2R:13509531-13509651 1.0000 120 chr3L:21058768-21058888 1.0000 120 chr3R:30806385-30806505 1.0000 120 chr3L:16419484-16419604 1.0000 120 chr3L:3390742-3390862 1.0000 120 chrX:1026627-1026747 1.0000 120 chr3R:29068908-29069028 1.0000 120 chr2L:15254375-15254495 1.0000 120 chr2L:2494651-2494771 1.0000 120 chr3L:8968644-8968764 1.0000 120 chr2R:12741240-12741360 1.0000 120 chr2R:10530709-10530829 1.0000 120 chr2L:20327499-20327619 1.0000 120 chr2L:2862588-2862708 1.0000 120 chr3L:6467681-6467801 1.0000 120 chr2R:11594505-11594625 1.0000 120 chr3L:8763370-8763490 1.0000 120 chr3L:11328040-11328160 1.0000 120 chr2L:18625512-18625632 1.0000 120 chrX:16781220-16781340 1.0000 120 chrX:10745455-10745575 1.0000 120 chr2R:11792757-11792877 1.0000 120 chr2R:10228085-10228205 1.0000 120 chr2R:20091339-20091459 1.0000 120 chr2L:3856456-3856576 1.0000 120 chrX:9078384-9078504 1.0000 120 chr2L:21218810-21218930 1.0000 120 chr2R:17869421-17869541 1.0000 120 chr2R:18202717-18202837 1.0000 120 chr2R:6133434-6133554 1.0000 120 chr2L:10517048-10517168 1.0000 120 chrX:15591772-15591892 1.0000 120 chr3L:18791579-18791699 1.0000 120 chr2R:19290346-19290466 1.0000 120 chrX:10363049-10363169 1.0000 120 chr3R:32051694-32051814 1.0000 120 chr2R:16832925-16833045 1.0000 120 chr3L:20954225-20954345 1.0000 120 chr3L:18242252-18242372 1.0000 120 chr3L:10734650-10734770 1.0000 120 chr3L:3970552-3970672 1.0000 120 chr3L:9614595-9614715 1.0000 120 chr2L:13082308-13082428 1.0000 120 chr2L:14409414-14409534 1.0000 120 chr2R:6971515-6971635 1.0000 120 chr3L:4614023-4614143 1.0000 120 chr3R:30815073-30815193 1.0000 120 chr2R:19141703-19141823 1.0000 120 chr2L:13878949-13879069 1.0000 120 chr3R:11372741-11372861 1.0000 120 chr2R:12274328-12274448 1.0000 120 chr3R:7081990-7082110 1.0000 120 chr3R:18315485-18315605 1.0000 120 chr3L:7359916-7360036 1.0000 120 chr3L:13032257-13032377 1.0000 120 chr2L:7293669-7293789 1.0000 120 chr2L:19791704-19791824 1.0000 120 chr2R:9692775-9692895 1.0000 120 chrX:19308172-19308292 1.0000 120 chr2R:11541237-11541357 1.0000 120 chr2L:5093375-5093495 1.0000 120 chr3L:18398310-18398430 1.0000 120 chrX:6663267-6663387 1.0000 120 chrX:19348944-19349064 1.0000 120 chr2R:17699028-17699148 1.0000 120 chr3L:16164077-16164197 1.0000 120 chrX:1215108-1215228 1.0000 120 chrX:18404954-18405074 1.0000 120 chr3L:3760716-3760836 1.0000 120 chrX:5084925-5085045 1.0000 120 chrX:17473376-17473496 1.0000 120 chr2L:10767906-10768026 1.0000 120 chr3R:30802276-30802396 1.0000 120 chr3L:14195854-14195974 1.0000 120 chr3L:5926144-5926264 1.0000 120 chrX:13789147-13789267 1.0000 120 chr3R:26011645-26011765 1.0000 120 chr2R:9554076-9554196 1.0000 120 chr3R:10521328-10521448 1.0000 120 chr2L:15910011-15910131 1.0000 120 chr2L:12351024-12351144 1.0000 120 chrX:16573822-16573942 1.0000 120 chr2L:12046587-12046707 1.0000 120 chrX:11660630-11660750 1.0000 120 chr3R:12422719-12422839 1.0000 120 chr2L:9570835-9570955 1.0000 120 chr3L:3336814-3336934 1.0000 120 chr2R:12037208-12037328 1.0000 120 chr3R:13016282-13016402 1.0000 120 chr2R:17514160-17514280 1.0000 120 chr2R:21323895-21324015 1.0000 120 chr2R:8122901-8123021 1.0000 120 chr3R:24518174-24518294 1.0000 120 chr2R:20126281-20126401 1.0000 120 chr3R:15644893-15645013 1.0000 120 chr2R:18583365-18583485 1.0000 120 chr3L:5654714-5654834 1.0000 120 chrX:618695-618815 1.0000 120 chrX:3845631-3845751 1.0000 120 chr2R:13429975-13430095 1.0000 120 chr3L:8925799-8925919 1.0000 120 chr3L:20944363-20944483 1.0000 120 chr3L:16544374-16544494 1.0000 120 chr2R:7150705-7150825 1.0000 120 chr3L:11429742-11429862 1.0000 120 chrX:3357751-3357871 1.0000 120 chr3R:23176845-23176965 1.0000 120 chr2L:12463270-12463390 1.0000 120 chr2L:6700792-6700912 1.0000 120 chr3R:26121898-26122018 1.0000 120 chrX:11548908-11549028 1.0000 120 chr3R:14361754-14361874 1.0000 120 chr2L:13205399-13205519 1.0000 120 chrX:5968192-5968312 1.0000 120 chr2R:14009181-14009301 1.0000 120 chrX:12660195-12660315 1.0000 120 chr2L:6179145-6179265 1.0000 120 chr3R:20833108-20833228 1.0000 120 chr3R:21349506-21349626 1.0000 120 chrX:5285944-5286064 1.0000 120 chr3R:22147626-22147746 1.0000 120 chr3R:15983749-15983869 1.0000 120 chr3R:21850309-21850429 1.0000 120 chr2L:7049010-7049130 1.0000 120 chr3R:28859139-28859259 1.0000 120 chrX:3188563-3188683 1.0000 120 chr3R:29725736-29725856 1.0000 120 chr3R:14818037-14818157 1.0000 120 chr3R:9637556-9637676 1.0000 120 chr3R:20259670-20259790 1.0000 120 chr2L:9613416-9613536 1.0000 120 chr3L:14672822-14672942 1.0000 120 chr3R:22133833-22133953 1.0000 120 chr2L:11331831-11331951 1.0000 120 chr3R:23157809-23157929 1.0000 120 chr3R:8180569-8180689 1.0000 120 chr3L:21057178-21057298 1.0000 120 chr2L:6283431-6283551 1.0000 120 chr2R:6707826-6707946 1.0000 120 chr2L:19867038-19867158 1.0000 120 chrX:16834333-16834453 1.0000 120 chr3R:24582560-24582680 1.0000 120 chr2L:8692539-8692659 1.0000 120 chrX:7935831-7935951 1.0000 120 chr3L:21821998-21822118 1.0000 120 chr3R:22596623-22596743 1.0000 120 chr3R:25885258-25885378 1.0000 120 chrX:22837517-22837637 1.0000 120 chrX:487605-487725 1.0000 120 chr3L:4626042-4626162 1.0000 120 chr2R:12259399-12259519 1.0000 120 chr2L:8950356-8950476 1.0000 120 chrX:5901924-5902044 1.0000 120 chr3L:14956385-14956505 1.0000 120 chr3R:26130717-26130837 1.0000 120 chr2L:5980803-5980923 1.0000 120 chr2L:484303-484423 1.0000 120 chr3L:10516011-10516131 1.0000 120 chr2L:901569-901689 1.0000 120 chr2L:19190352-19190472 1.0000 120 chr3R:18298281-18298401 1.0000 120 chr3R:5217382-5217502 1.0000 120 chr2L:21309960-21310080 1.0000 120 chr2R:25032096-25032216 1.0000 120 chr3R:6667341-6667461 1.0000 120 chr2L:20911468-20911588 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG11398/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG11398.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.279 C 0.223 G 0.217 T 0.28 Background letter frequencies (from file dataset with add-one prior applied): A 0.279 C 0.223 G 0.217 T 0.28 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCAAACAA MEME-1 width = 8 sites = 63 llr = 503 E-value = 1.6e-010 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:a8a1a7 pos.-specific C 18:2:9:2 probability G 8::::::1 matrix T :2:::::: bits 2.2 2.0 1.8 *** 1.5 * *** Relative 1.3 ******* Entropy 1.1 ******* (11.5 bits) 0.9 ******* 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCAAACAA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:25885258-25885378 66 1.82e-05 GATAAGGTCG GCAAACAA AATACTTATC chrX:12660195-12660315 42 1.82e-05 TAAAAGCAAA GCAAACAA CGCACACACG chr3L:20944363-20944483 15 1.82e-05 AACAACAATG GCAAACAA ATGAGCGGCA chr2R:11541237-11541357 47 1.82e-05 TTGCAAACTG GCAAACAA ATCAAGAACA chr2R:19141703-19141823 98 1.82e-05 AATAGTAATC GCAAACAA AAAAGCACGA chr2L:13082308-13082428 87 1.82e-05 GTGTCAATGT GCAAACAA AGCCGCCAAA chr2R:16832925-16833045 21 1.82e-05 GTGCCACCTG GCAAACAA CCGACTTAAT chr2R:11792757-11792877 49 1.82e-05 GAACAGGCAA GCAAACAA CATGAAATAC chr3L:15563540-15563660 77 1.82e-05 GTTTCTCCAG GCAAACAA ACGTCGTTTT chr3L:7859852-7859972 1 1.82e-05 . GCAAACAA CTAGGGCAAC chr3L:483960-484080 86 1.82e-05 GTCAATAAGT GCAAACAA GGCGAGGCGT chr2L:9497315-9497435 93 1.82e-05 aagacagaga gCAAACAA CAACTTTTAA chr3R:20259670-20259790 90 3.28e-05 TGATAAGCCG GCAAACAC ACGTTTAGTA chr2L:2494651-2494771 64 3.28e-05 GCGCCCTTGT GCAAACAC ACGGAAAACC chr2L:13838800-13838920 20 3.28e-05 CGGTGTTTAT GCAAACAC AAAGGCGTGT chr2R:21611417-21611537 73 3.28e-05 AGGAACGCAT GCAAACAC CATTGGAACG chr3R:6667341-6667461 63 4.74e-05 TGTCGTCGTC GCACACAA GACAACACTA chr3R:30802276-30802396 31 4.74e-05 CCGGGGTTGA GCACACAA GCCATAGATG chr2R:10530709-10530829 42 4.74e-05 AGATCACAAC GCACACAA ATAGAACACT chr3R:26130717-26130837 19 7.03e-05 CGACCATAAA GTAAACAA GTCATGGCTG chr3L:14672822-14672942 41 7.03e-05 TCGGCGTACG GTAAACAA CAACTGCTGC chr3R:22147626-22147746 71 7.03e-05 ATACACGTTG GTAAACAA AGGGCAAGGA chr3R:24518174-24518294 101 7.03e-05 gaCTCGCGCT GTAAACAA TCGACGTCAC chr2L:9570835-9570955 16 7.03e-05 AATATGAAAA GTAAACAA AGTTGCTGGC chr3L:14564538-14564658 83 7.03e-05 CAAAATTCGT GTAAACAA GGCGGCAATG chr3L:14549353-14549473 112 7.03e-05 TCTGGATTGT GTAAACAA C chr3R:23445351-23445471 111 7.03e-05 acaacaaggg gtaaacaa ag chr3L:12482395-12482515 94 7.03e-05 TACGTTCGGT GTAAACAA ACCGCAGTAG chr3L:2468665-2468785 62 7.03e-05 GTGCTCATTT GTAAACAA ACAATAGATT chr3R:13817571-13817691 70 7.03e-05 TGTTTTCAGT GTAAACAA CAGCACCCCA chrX:17473376-17473496 112 8.45e-05 tttaCACACA GCAAACAG C chr3R:4390140-4390260 14 8.45e-05 GTTCGAAACA GCAAACAG TATTACTCCA chr2L:5303731-5303851 55 8.45e-05 GCACACCACA GCAAACAG AGTGGAGTGT chr2R:6971515-6971635 57 1.08e-04 TTTCCTATAG ACAAACAA AAAACCGTAA chr3R:21592190-21592310 69 1.08e-04 TAATAATAAT ACAAACAA CAATGAAACG chr3L:10858611-10858731 49 1.08e-04 TGTATTCCAA ACAAACAA CGAAGCGCAA chr2L:9775319-9775439 36 1.08e-04 aaaaaaaaaa acaaacaa TTATCCACAT chr3L:10516011-10516131 99 1.38e-04 AAAACAAAAC GCACACAC GCCTCAGCAG chrX:6663267-6663387 75 1.38e-04 TCCATAGAAA CCAAACAA ACCACAGAAT chr3L:18398310-18398430 32 1.38e-04 TGTTGCTGGC GCACACAC TTTTCTTTCG chr3L:4614023-4614143 69 1.38e-04 CGAGGGTCGT GCACACAC TTCTCATGTT chrX:15591772-15591892 84 1.38e-04 GAAAATTGGA GCACACAC ATTGGAAATA chr3L:21058768-21058888 91 1.38e-04 CGTGGGGGCA GCACACAC GTCGCTTGCT chr3L:4193875-4193995 62 1.38e-04 TACAACACTG CCAAACAA TGGTGAATGA chr3R:30812089-30812209 30 1.38e-04 CATTGGCTTC CCAAACAA TCCAAGTATC chr3R:18412391-18412511 12 1.38e-04 ACGGGGCCCC CCAAACAA ACTATACGTA chr2R:12259399-12259519 112 1.90e-04 GCAGTATTGG GCCaacaa a chr2L:8692539-8692659 37 1.90e-04 AGAGGAAAAA GCAAACAT ACACTGAAAC chr3R:14818037-14818157 27 1.90e-04 ctgctCAGGT GCCAACAA ACTCGCCGAA chr2L:13205399-13205519 79 1.90e-04 TCGTCCGTCC GCAAACAT CACGTGATTC chrX:16573822-16573942 62 1.90e-04 TCGAACCGCC GCCAACAA CAATTGCTGT chr3L:11492580-11492700 73 1.90e-04 ATGCAGAGCC GCAAACAT GTGCCGTTAA chr3R:23157809-23157929 50 2.31e-04 TTAGTGATGT GCAAAAAA CATCGGTGCG chr3R:26121898-26122018 8 2.31e-04 ATGCACA GCAAAAAA TTGTCTTTAA chr2L:5093375-5093495 44 2.31e-04 TTTTTTATCC GCAAAAAA TTGCACCAAA chr2R:17869421-17869541 108 2.31e-04 ATGAATAAAT GTACACAA CGTAC chr2R:24292834-24292954 34 2.31e-04 TTGCGAGGGT GCAAAAAA ATGGCTAATA chr2L:484303-484423 44 2.49e-04 GTCTATATCG ACAAACAC TCGTACGAGC chr2R:6133434-6133554 37 2.49e-04 GTATACCAAT ACAAACAC AGCTGCAACC chr2R:8242701-8242821 106 2.49e-04 GACTAGATAA ACAAACAC TTGTTGG chr3R:18298281-18298401 6 2.61e-04 CGCAC GCACACAG TCGCACTCAA chr2L:15910011-15910131 41 2.79e-04 ACAAATTTGC GTAAACAG AGCACTATTT chrX:3357751-3357871 19 2.97e-04 ATTTCTGTTT ACACACAA TTCAGTGTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:25885258-25885378 1.8e-05 65_[+1]_47 chrX:12660195-12660315 1.8e-05 41_[+1]_71 chr3L:20944363-20944483 1.8e-05 14_[+1]_98 chr2R:11541237-11541357 1.8e-05 46_[+1]_66 chr2R:19141703-19141823 1.8e-05 97_[+1]_15 chr2L:13082308-13082428 1.8e-05 86_[+1]_26 chr2R:16832925-16833045 1.8e-05 20_[+1]_92 chr2R:11792757-11792877 1.8e-05 48_[+1]_64 chr3L:15563540-15563660 1.8e-05 76_[+1]_36 chr3L:7859852-7859972 1.8e-05 [+1]_112 chr3L:483960-484080 1.8e-05 85_[+1]_27 chr2L:9497315-9497435 1.8e-05 92_[+1]_20 chr3R:20259670-20259790 3.3e-05 89_[+1]_23 chr2L:2494651-2494771 3.3e-05 63_[+1]_49 chr2L:13838800-13838920 3.3e-05 19_[+1]_93 chr2R:21611417-21611537 3.3e-05 72_[+1]_40 chr3R:6667341-6667461 4.7e-05 62_[+1]_50 chr3R:30802276-30802396 4.7e-05 30_[+1]_82 chr2R:10530709-10530829 4.7e-05 41_[+1]_71 chr3R:26130717-26130837 7e-05 18_[+1]_94 chr3L:14672822-14672942 7e-05 40_[+1]_72 chr3R:22147626-22147746 7e-05 70_[+1]_42 chr3R:24518174-24518294 7e-05 100_[+1]_12 chr2L:9570835-9570955 7e-05 15_[+1]_97 chr3L:14564538-14564658 7e-05 82_[+1]_30 chr3L:14549353-14549473 7e-05 111_[+1]_1 chr3R:23445351-23445471 7e-05 110_[+1]_2 chr3L:12482395-12482515 7e-05 93_[+1]_19 chr3L:2468665-2468785 7e-05 61_[+1]_51 chr3R:13817571-13817691 7e-05 69_[+1]_43 chrX:17473376-17473496 8.4e-05 111_[+1]_1 chr3R:4390140-4390260 8.4e-05 13_[+1]_99 chr2L:5303731-5303851 8.4e-05 54_[+1]_58 chr2R:6971515-6971635 0.00011 56_[+1]_56 chr3R:21592190-21592310 0.00011 68_[+1]_44 chr3L:10858611-10858731 0.00011 48_[+1]_64 chr2L:9775319-9775439 0.00011 35_[+1]_77 chr3L:10516011-10516131 0.00014 98_[+1]_14 chrX:6663267-6663387 0.00014 74_[+1]_38 chr3L:18398310-18398430 0.00014 31_[+1]_81 chr3L:4614023-4614143 0.00014 68_[+1]_44 chrX:15591772-15591892 0.00014 83_[+1]_29 chr3L:21058768-21058888 0.00014 90_[+1]_22 chr3L:4193875-4193995 0.00014 61_[+1]_51 chr3R:30812089-30812209 0.00014 29_[+1]_83 chr3R:18412391-18412511 0.00014 11_[+1]_101 chr2R:12259399-12259519 0.00019 111_[+1]_1 chr2L:8692539-8692659 0.00019 36_[+1]_76 chr3R:14818037-14818157 0.00019 26_[+1]_86 chr2L:13205399-13205519 0.00019 78_[+1]_34 chrX:16573822-16573942 0.00019 61_[+1]_51 chr3L:11492580-11492700 0.00019 72_[+1]_40 chr3R:23157809-23157929 0.00023 49_[+1]_63 chr3R:26121898-26122018 0.00023 7_[+1]_105 chr2L:5093375-5093495 0.00023 43_[+1]_69 chr2R:17869421-17869541 0.00023 107_[+1]_5 chr2R:24292834-24292954 0.00023 33_[+1]_79 chr2L:484303-484423 0.00025 43_[+1]_69 chr2R:6133434-6133554 0.00025 36_[+1]_76 chr2R:8242701-8242821 0.00025 105_[+1]_7 chr3R:18298281-18298401 0.00026 5_[+1]_107 chr2L:15910011-15910131 0.00028 40_[+1]_72 chrX:3357751-3357871 0.0003 18_[+1]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAAACAA width=8 seqs=63 chr3R:25885258-25885378 ( 66) GCAAACAA 1 chrX:12660195-12660315 ( 42) GCAAACAA 1 chr3L:20944363-20944483 ( 15) GCAAACAA 1 chr2R:11541237-11541357 ( 47) GCAAACAA 1 chr2R:19141703-19141823 ( 98) GCAAACAA 1 chr2L:13082308-13082428 ( 87) GCAAACAA 1 chr2R:16832925-16833045 ( 21) GCAAACAA 1 chr2R:11792757-11792877 ( 49) GCAAACAA 1 chr3L:15563540-15563660 ( 77) GCAAACAA 1 chr3L:7859852-7859972 ( 1) GCAAACAA 1 chr3L:483960-484080 ( 86) GCAAACAA 1 chr2L:9497315-9497435 ( 93) GCAAACAA 1 chr3R:20259670-20259790 ( 90) GCAAACAC 1 chr2L:2494651-2494771 ( 64) GCAAACAC 1 chr2L:13838800-13838920 ( 20) GCAAACAC 1 chr2R:21611417-21611537 ( 73) GCAAACAC 1 chr3R:6667341-6667461 ( 63) GCACACAA 1 chr3R:30802276-30802396 ( 31) GCACACAA 1 chr2R:10530709-10530829 ( 42) GCACACAA 1 chr3R:26130717-26130837 ( 19) GTAAACAA 1 chr3L:14672822-14672942 ( 41) GTAAACAA 1 chr3R:22147626-22147746 ( 71) GTAAACAA 1 chr3R:24518174-24518294 ( 101) GTAAACAA 1 chr2L:9570835-9570955 ( 16) GTAAACAA 1 chr3L:14564538-14564658 ( 83) GTAAACAA 1 chr3L:14549353-14549473 ( 112) GTAAACAA 1 chr3R:23445351-23445471 ( 111) GTAAACAA 1 chr3L:12482395-12482515 ( 94) GTAAACAA 1 chr3L:2468665-2468785 ( 62) GTAAACAA 1 chr3R:13817571-13817691 ( 70) GTAAACAA 1 chrX:17473376-17473496 ( 112) GCAAACAG 1 chr3R:4390140-4390260 ( 14) GCAAACAG 1 chr2L:5303731-5303851 ( 55) GCAAACAG 1 chr2R:6971515-6971635 ( 57) ACAAACAA 1 chr3R:21592190-21592310 ( 69) ACAAACAA 1 chr3L:10858611-10858731 ( 49) ACAAACAA 1 chr2L:9775319-9775439 ( 36) ACAAACAA 1 chr3L:10516011-10516131 ( 99) GCACACAC 1 chrX:6663267-6663387 ( 75) CCAAACAA 1 chr3L:18398310-18398430 ( 32) GCACACAC 1 chr3L:4614023-4614143 ( 69) GCACACAC 1 chrX:15591772-15591892 ( 84) GCACACAC 1 chr3L:21058768-21058888 ( 91) GCACACAC 1 chr3L:4193875-4193995 ( 62) CCAAACAA 1 chr3R:30812089-30812209 ( 30) CCAAACAA 1 chr3R:18412391-18412511 ( 12) CCAAACAA 1 chr2R:12259399-12259519 ( 112) GCCAACAA 1 chr2L:8692539-8692659 ( 37) GCAAACAT 1 chr3R:14818037-14818157 ( 27) GCCAACAA 1 chr2L:13205399-13205519 ( 79) GCAAACAT 1 chrX:16573822-16573942 ( 62) GCCAACAA 1 chr3L:11492580-11492700 ( 73) GCAAACAT 1 chr3R:23157809-23157929 ( 50) GCAAAAAA 1 chr3R:26121898-26122018 ( 8) GCAAAAAA 1 chr2L:5093375-5093495 ( 44) GCAAAAAA 1 chr2R:17869421-17869541 ( 108) GTACACAA 1 chr2R:24292834-24292954 ( 34) GCAAAAAA 1 chr2L:484303-484423 ( 44) ACAAACAC 1 chr2R:6133434-6133554 ( 37) ACAAACAC 1 chr2R:8242701-8242821 ( 106) ACAAACAC 1 chr3R:18298281-18298401 ( 6) GCACACAG 1 chr2L:15910011-15910131 ( 41) GTAAACAG 1 chrX:3357751-3357871 ( 19) ACACACAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1179 E= 1.6e-010 -114 -181 190 -1262 -1262 183 -1262 -44 177 -223 -1262 -1262 156 -36 -1262 -1262 184 -1262 -1262 -1262 -214 207 -1262 -1262 184 -1262 -1262 -1262 129 -23 -145 -256 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 63 E= 1.6e-010 0.126984 0.063492 0.809524 0.000000 0.000000 0.793651 0.000000 0.206349 0.952381 0.047619 0.000000 0.000000 0.825397 0.174603 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.063492 0.936508 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.682540 0.190476 0.079365 0.047619 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAAACAA MEME-1 regular expression -------------------------------------------------------------------------------- G[CT]AAACAA -------------------------------------------------------------------------------- Time 7.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GCWGCHRC MEME-2 width = 8 sites = 37 llr = 317 E-value = 2.7e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCWGCHRC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::4::43: pos.-specific C :a::a32a probability G a:2a::5: matrix T ::5::3:: bits 2.2 ** ** * 2.0 ** ** * 1.8 ** ** * 1.5 ** ** * Relative 1.3 ** ** * Entropy 1.1 ** ** * (12.4 bits) 0.9 ** ** * 0.7 ** ** ** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCAGC consensus A CA sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCHRC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:7108245-7108365 86 8.85e-06 ATGCACGGAG GCTGCAGC GTCGGCGGAG chr3L:11708368-11708488 105 1.59e-05 AGCGCTCTTC GCTGCCGC ACTTCACG chr3L:639589-639709 49 1.59e-05 cgccactgcc gctgccgc tgtcgctgcc chr3R:23157809-23157929 4 2.47e-05 AAA GCAGCAGC TTGTTCGTTT chr2R:12274328-12274448 51 2.47e-05 gcaagaagca gcagcagC ATCCACCAGT chr2R:16951623-16951743 10 2.47e-05 AAGTCTCTG GCAGCAGC AGGTCCTCGC chr2R:25032096-25032216 112 4.07e-05 GCTCTGTCCT GCAGCCGC C chr3R:14818037-14818157 10 4.07e-05 gcggctgct gctgctgc tgctCAGGTG chr3L:16164077-16164197 23 4.07e-05 ACTTTGTTTG GCTGCTGC TTGCTCAGTG chr3R:30815073-30815193 109 4.07e-05 GTCTCATTTC GCTGCTGC ATAC chr3L:15336669-15336789 83 4.07e-05 AAATATCGAC GCTGCTGC ACCGCTCAAG chr2L:8415780-8415900 25 4.07e-05 GGCAAAAAGA GCTGCTGC CAGTGTAGAA chr3L:14028867-14028987 46 4.07e-05 TTTTGTTATT GCTGCTGC CGCGGCTGCT chr3L:11003049-11003169 69 4.07e-05 CCCGCCTCCA GCTGCTGC GTCAATATTG chr3R:28859139-28859259 40 4.95e-05 TCGAAAATGT GCAGCTGC TCTCAGCGGC chrX:11660630-11660750 90 4.95e-05 GTCTGCATCA GCAGCTGC GACAGCGACG chr3L:20944363-20944483 27 5.64e-05 AAACAAATGA GCGGCAGC AGGCAGAATA chr3L:5654714-5654834 12 5.64e-05 GTCGTGCGCA GCGGCAGC GTTTTCCTAA chrX:1215108-1215228 55 5.64e-05 ACGCCTAGCA GCGGCAGC ACGAAAATGG chr3R:11372741-11372861 2 5.64e-05 G GCGGCAGC AGTCGCAGTC chr2L:6283431-6283551 73 6.78e-05 TAGACAAGAA GCTGCAAC TGTGTGGGAG chr2R:6133434-6133554 46 6.78e-05 TACAAACACA GCTGCAAC CCATAACTGC chr2R:13509531-13509651 99 6.78e-05 TTACAACACT GCTGCAAC CGCCTTGAAC chr3R:13016282-13016402 109 9.15e-05 ATTTATAATA GCTGCCAC AACT chr2R:10228085-10228205 73 9.15e-05 CCCCCGCCCC GCTGCCAC CATCACACCC chr3R:25660919-25661039 100 9.15e-05 TTTGCCACTG GCTGCCAC GCGACCAGCC chr3R:24582560-24582680 36 1.10e-04 TGTAACGAAA GCAGCAAC AAAGCAACCA chr2L:2862588-2862708 104 1.10e-04 AGAAGATAGT GCTGCCCC aaaaaaaaa chr2R:19290346-19290466 40 1.26e-04 CCGCCCGCAG GCAGCACC TATCCCAAGA chr2L:564100-564220 74 1.26e-04 ACCACGTTGC GCAGCACC GTAGGATCAG chr4:695171-695291 71 1.26e-04 ATAAAATCCT GCAGCACC GGATATAATG chr2L:12463270-12463390 49 1.47e-04 gagcgagagg gcagccac gatagagcga chr2R:9692775-9692895 104 1.47e-04 CGTAGTTGTT GCTGCTAC TGCTGCTCG chr3R:22596623-22596743 7 1.63e-04 acGCGA GCAGCCCC AAGTGGGCGT chrX:6279185-6279305 94 1.63e-04 GATTCGTTTC GCAGCCCC ACGCTGGTAT chr3L:11489599-11489719 89 1.99e-04 TTGCACCGCG GCGGCACC AAGAAGCAGT chr2R:14488408-14488528 54 2.06e-04 CAAATGTGCG GCGGCCAC AAAGATTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCHRC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7108245-7108365 8.9e-06 85_[+2]_27 chr3L:11708368-11708488 1.6e-05 104_[+2]_8 chr3L:639589-639709 1.6e-05 48_[+2]_64 chr3R:23157809-23157929 2.5e-05 3_[+2]_109 chr2R:12274328-12274448 2.5e-05 50_[+2]_62 chr2R:16951623-16951743 2.5e-05 9_[+2]_103 chr2R:25032096-25032216 4.1e-05 111_[+2]_1 chr3R:14818037-14818157 4.1e-05 9_[+2]_103 chr3L:16164077-16164197 4.1e-05 22_[+2]_90 chr3R:30815073-30815193 4.1e-05 108_[+2]_4 chr3L:15336669-15336789 4.1e-05 82_[+2]_30 chr2L:8415780-8415900 4.1e-05 24_[+2]_88 chr3L:14028867-14028987 4.1e-05 45_[+2]_67 chr3L:11003049-11003169 4.1e-05 68_[+2]_44 chr3R:28859139-28859259 5e-05 39_[+2]_73 chrX:11660630-11660750 5e-05 89_[+2]_23 chr3L:20944363-20944483 5.6e-05 26_[+2]_86 chr3L:5654714-5654834 5.6e-05 11_[+2]_101 chrX:1215108-1215228 5.6e-05 54_[+2]_58 chr3R:11372741-11372861 5.6e-05 1_[+2]_111 chr2L:6283431-6283551 6.8e-05 72_[+2]_40 chr2R:6133434-6133554 6.8e-05 45_[+2]_67 chr2R:13509531-13509651 6.8e-05 98_[+2]_14 chr3R:13016282-13016402 9.1e-05 108_[+2]_4 chr2R:10228085-10228205 9.1e-05 72_[+2]_40 chr3R:25660919-25661039 9.1e-05 99_[+2]_13 chr3R:24582560-24582680 0.00011 35_[+2]_77 chr2L:2862588-2862708 0.00011 103_[+2]_9 chr2R:19290346-19290466 0.00013 39_[+2]_73 chr2L:564100-564220 0.00013 73_[+2]_39 chr4:695171-695291 0.00013 70_[+2]_42 chr2L:12463270-12463390 0.00015 48_[+2]_64 chr2R:9692775-9692895 0.00015 103_[+2]_9 chr3R:22596623-22596743 0.00016 6_[+2]_106 chrX:6279185-6279305 0.00016 93_[+2]_19 chr3L:11489599-11489719 0.0002 88_[+2]_24 chr2R:14488408-14488528 0.00021 53_[+2]_59 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCHRC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCWGCHRC width=8 seqs=37 chr3R:7108245-7108365 ( 86) GCTGCAGC 1 chr3L:11708368-11708488 ( 105) GCTGCCGC 1 chr3L:639589-639709 ( 49) GCTGCCGC 1 chr3R:23157809-23157929 ( 4) GCAGCAGC 1 chr2R:12274328-12274448 ( 51) GCAGCAGC 1 chr2R:16951623-16951743 ( 10) GCAGCAGC 1 chr2R:25032096-25032216 ( 112) GCAGCCGC 1 chr3R:14818037-14818157 ( 10) GCTGCTGC 1 chr3L:16164077-16164197 ( 23) GCTGCTGC 1 chr3R:30815073-30815193 ( 109) GCTGCTGC 1 chr3L:15336669-15336789 ( 83) GCTGCTGC 1 chr2L:8415780-8415900 ( 25) GCTGCTGC 1 chr3L:14028867-14028987 ( 46) GCTGCTGC 1 chr3L:11003049-11003169 ( 69) GCTGCTGC 1 chr3R:28859139-28859259 ( 40) GCAGCTGC 1 chrX:11660630-11660750 ( 90) GCAGCTGC 1 chr3L:20944363-20944483 ( 27) GCGGCAGC 1 chr3L:5654714-5654834 ( 12) GCGGCAGC 1 chrX:1215108-1215228 ( 55) GCGGCAGC 1 chr3R:11372741-11372861 ( 2) GCGGCAGC 1 chr2L:6283431-6283551 ( 73) GCTGCAAC 1 chr2R:6133434-6133554 ( 46) GCTGCAAC 1 chr2R:13509531-13509651 ( 99) GCTGCAAC 1 chr3R:13016282-13016402 ( 109) GCTGCCAC 1 chr2R:10228085-10228205 ( 73) GCTGCCAC 1 chr3R:25660919-25661039 ( 100) GCTGCCAC 1 chr3R:24582560-24582680 ( 36) GCAGCAAC 1 chr2L:2862588-2862708 ( 104) GCTGCCCC 1 chr2R:19290346-19290466 ( 40) GCAGCACC 1 chr2L:564100-564220 ( 74) GCAGCACC 1 chr4:695171-695291 ( 71) GCAGCACC 1 chr2L:12463270-12463390 ( 49) GCAGCCAC 1 chr2R:9692775-9692895 ( 104) GCTGCTAC 1 chr3R:22596623-22596743 ( 7) GCAGCCCC 1 chrX:6279185-6279305 ( 94) GCAGCCCC 1 chr3L:11489599-11489719 ( 89) GCGGCACC 1 chr2R:14488408-14488528 ( 54) GCGGCCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCHRC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 2.7e-001 -1185 -1185 220 -1185 -1185 216 -1185 -1185 33 -1185 -42 80 -1185 -1185 220 -1185 -1185 216 -1185 -1185 63 41 -1185 -5 -5 -24 131 -1185 -1185 216 -1185 -1185 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCHRC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 2.7e-001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.351351 0.000000 0.162162 0.486486 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.432432 0.297297 0.000000 0.270270 0.270270 0.189189 0.540541 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCWGCHRC MEME-2 regular expression -------------------------------------------------------------------------------- GC[TA]GC[ACT][GA]C -------------------------------------------------------------------------------- Time 14.16 secs. ******************************************************************************** ******************************************************************************** MOTIF WKTTGTTT MEME-3 width = 8 sites = 84 llr = 603 E-value = 3.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif WKTTGTTT MEME-3 Description -------------------------------------------------------------------------------- Simplified A 3::::::: pos.-specific C 2:21:::: probability G :3::9::2 matrix T 57891aa8 bits 2.2 2.0 1.8 ** 1.5 *** Relative 1.3 ****** Entropy 1.1 ******* (10.4 bits) 0.9 ******* 0.7 ******* 0.4 ******* 0.2 ******** 0.0 -------- Multilevel TTTTGTTT consensus AG sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTT MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8180569-8180689 43 2.93e-05 GTTCTGTATT TTTTGTTT TCTATTTGCC chr2R:8122901-8123021 15 2.93e-05 GATTTAATAC TTTTGTTT TATTGCGATT chr3R:7081990-7082110 95 2.93e-05 AACCGTTTTA TTTTGTTT TTTAGGAACA chr2L:21218810-21218930 98 2.93e-05 TCTCAGTTGT TTTTGTTT TCGCGTTGTT chr3L:21058768-21058888 49 2.93e-05 CTCGCAGCAG TTTTGTTT GTGGCTCAGT chr3R:16276313-16276433 64 2.93e-05 GTATCTCTGT TTTTGTTT TTTATAGTTC chr2L:20911468-20911588 107 5.20e-05 CACTTGGCTT TGTTGTTT GCCTTT chr3L:8925799-8925919 76 5.20e-05 TACGTTATTA TGTTGTTT GTTCGTTGTT chr3L:14195854-14195974 48 5.20e-05 TTTCTTCGAT TGTTGTTT CAGTGTGTCT chrX:1215108-1215228 4 5.20e-05 TTA TGTTGTTT TGATTTTTAC chr3R:20276115-20276235 72 5.20e-05 CGCACTTTCC TGTTGTTT GCTCAACACA chr3L:21476851-21476971 17 5.20e-05 CCCTTGTTTT TGTTGTTT AAACTAATGC chr3R:9637556-9637676 37 1.04e-04 GTTCCGCCAT ATTTGTTT TTCTAGTGGT chrX:3188563-3188683 100 1.04e-04 TGATTGGGAA ATTTGTTT AGAGATCTCG chr2R:14009181-14009301 104 1.04e-04 TTCCAtttgg ctttgttt tgttctgtt chrX:11660630-11660750 29 1.04e-04 tttgctttgc atttgttt gtctgtttga chr2L:12046587-12046707 20 1.04e-04 TTTACCCTGC ATTTGTTT CTCCACCCAA chr2L:15910011-15910131 55 1.04e-04 ACAGAGCACT ATTTGTTT GGCCGAATGG chr3L:16164077-16164197 14 1.04e-04 TTTTGCTTCA CTTTGTTT GGCTGCTGCT chr2R:19141703-19141823 16 1.04e-04 CTTTCCTTTG ATTTGTTT GGTGCTGTCG chr2R:6133434-6133554 17 1.04e-04 CTCTACTTCT ATTTGTTT GGGTATACCA chr3L:11328040-11328160 34 1.04e-04 CGTGTCATAG ATTTGTTT TATGTTTATG chr2R:12741240-12741360 45 1.04e-04 AGTCTTGTTT ATTTGTTT GCCTTTAATC chr2L:2494651-2494771 42 1.04e-04 TTCGGCTATT CTTTGTTT ACATGCGCCC chr2L:564100-564220 106 1.04e-04 CGTGCGtttc atttgttt tgatttg chrX:6604842-6604962 82 1.04e-04 ttattgactt atttgttt aGACCACCAC chr3R:30812089-30812209 51 1.04e-04 AAGTATCTTG CTTTGTTT GCAGTTCTTG chr3L:11003049-11003169 8 1.04e-04 GCTTACA CTTTGTTT ACAATGTTGC chr2R:14488408-14488528 66 1.04e-04 GGCCACAAAG ATTTGTTT ACTTCGGATA chr2L:18625512-18625632 43 1.45e-04 TGTGTTTTAT CGTTGTTT GCTTTATCAA chr3L:19073296-19073416 62 1.45e-04 GGGTAAACGA CGTTGTTT ACTCGCACCC chr2R:8060298-8060418 71 1.45e-04 CGGTCGATGG AGTTGTTT TTGTTCTTGT chr3R:13817571-13817691 57 1.45e-04 ATCTGCTTTC CGTTGTTT TCAGTGTAAA chrX:3357751-3357871 11 1.68e-04 CTTTATCAAT TTCTGTTT ACACACAATT chrX:10363049-10363169 33 1.68e-04 TTTGTATTCT TTCTGTTT AGGACAGATA chr2L:2862588-2862708 49 1.68e-04 ATATCGCGTA TTCTGTTT ACTTTCTAGT chr3L:10666809-10666929 108 1.91e-04 TTCTAgtagt ttttgttg ttctt chr3R:26121898-26122018 91 2.14e-04 AGCGGAACAT TTTCGTTT ACTTTGCCGA chr2R:6971515-6971635 20 2.14e-04 CCGAGCGCAT TTTCGTTT TCCTCCGGTG chr3L:18242252-18242372 37 2.14e-04 GATATCAGTT TTTCGTTT GGTTCTGGGC chr2R:11594505-11594625 42 2.14e-04 AGCGCCGCCG TTTCGTTT GATTTGCCAT chrX:16573822-16573942 74 2.33e-04 CAACAACAAT TGCTGTTT GTATTTGTGA chr3L:9614595-9614715 33 2.33e-04 TCGAGCAGAC TGCTGTTT AAATATTTGC chrX:5285944-5286064 35 2.74e-04 AACGCTCATT ATCTGTTT GCATGCGAAA chr3R:21349506-21349626 31 2.74e-04 TGGGCTGTGT ATCTGTTT CTACGCGGCA chr2L:6700792-6700912 52 2.74e-04 TAGCCACTTG CTCTGTTT GCCCACAAAC chr3R:23176845-23176965 60 2.74e-04 ACTGAGACAC ATCTGTTT GGTATTTACT chr2R:20126281-20126401 22 2.74e-04 GAATTTGGGT CTCTGTTT GTTTATCTAA chr2R:11792757-11792877 74 2.74e-04 TACTTTTGTG CTCTGTTT GCACTGTGCC chrX:22837517-22837637 56 2.92e-04 AACGTCTGTG TGTTGTTG ACATTACAAG chr3R:22596623-22596743 27 2.92e-04 GTGGGCGTCG TGTTGTTG CTATTGTTAA chr2L:8692539-8692659 6 2.92e-04 CTTAA TGTTGTTG TTCTACCAGT chr2R:9554076-9554196 84 2.92e-04 AGCGCGTGCT TGTTGTTG GTCTTTTTGC chrX:19308172-19308292 60 2.92e-04 TTTGCTTTAC TGTTGTTG TAATTAGTTT chr2R:19845417-19845537 80 2.92e-04 AAGGCCGGCT TGTTGTTG GGCTTTCAAC chr3R:18298281-18298401 23 3.51e-04 GTCGCACTCA ATTTGTTG TCATACACAC chr3R:14818037-14818157 79 3.51e-04 TAGTCACTGT TGTCGTTT ATTTTGCATG chr3L:18398310-18398430 19 3.51e-04 CGAGTTAGTT CTTTGTTG CTGGCGCACA chr3L:13032257-13032377 21 3.51e-04 acCGCCGGCT ATTTGTTG GCTGTCAATA chrX:19839225-19839345 73 3.51e-04 TCTACCGGCC ATTTGTTG CTGTTAGTTT chrX:18404954-18405074 95 3.93e-04 GAAAAGTAAT CTTCGTTT GCTTAGCTTT chrX:6279185-6279305 85 3.93e-04 ACAGTTTATG ATTCGTTT CGCAGCCCCA chr3L:2468665-2468785 27 3.93e-04 GAAGTTGCCT CTTCGTTT TCCCTTTTTA chrX:487605-487725 10 4.63e-04 atGCGTAAG CGCTGTTT GTAGCTGTTG chr3L:21057178-21057298 50 4.63e-04 GGTTTAGTAT TTTTTTTT CAAAACTATA chr2L:11331831-11331951 91 4.63e-04 TCTTATTCAG TTTTTTTT TTTTCAGTGC chr3R:14361754-14361874 37 4.63e-04 CAGAATGATC AGCTGTTT GTGAGTCAAG chr3R:13016282-13016402 70 4.63e-04 CTGTTGTGTT TTTTTTTT TCCTGAAAGT chr2L:13082308-13082428 5 4.63e-04 CTTT TTTTTTTT TGCTCTGTTG chr3L:3970552-3970672 102 4.63e-04 ATCGCCTTCT TTTTTTTT TGGAATTCTT chrX:17582784-17582904 46 4.63e-04 TTTTTCTTTA TTTTTTTT CATTATGCCA chr2R:17869421-17869541 25 4.94e-04 GACGTAGTTT AGTTGTTG CGCCTGTCTG chr2L:9570835-9570955 37 5.27e-04 TGCTGGCTGT CGTCGTTT CGCCGCCGAG chr3L:12045668-12045788 69 5.27e-04 CAGGCGTTGT AGTCGTTT TATTTGCGCA chr3L:15563540-15563660 86 5.27e-04 GGCAAACAAA CGTCGTTT TCCAACACCT chr3R:24518174-24518294 1 5.56e-04 . TGTTTTTT AAATGAATTT chr2L:20758364-20758484 85 5.56e-04 CTTGTCAGCT TGTTTTTT GTACAGAGCG chr2L:6283431-6283551 43 6.42e-04 AATCAAACAA TTCTGTTG ACCAAATAAA chr3L:5926144-5926264 64 6.42e-04 TTTCCCCCTA ATTTTTTT CCCAGTGCAC chr2R:17699028-17699148 74 6.42e-04 TCTTCCACTT CTTTTTTT CGTTCAAAAT chr2L:7049010-7049130 97 6.83e-04 TGTCGCCAGT TTCCGTTT ACATTGCTTT chr2R:18202717-18202837 52 6.83e-04 TTGTACTGCT GTTTGTTT TCGTATATTT chr2L:13838800-13838920 48 6.83e-04 TGTCTGTTTG GTTTGTTT GTAAATAGCC chr2R:21323895-21324015 53 7.68e-04 GTGTGATAAG CGTTTTTT TATTCTGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTT MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8180569-8180689 2.9e-05 42_[+3]_70 chr2R:8122901-8123021 2.9e-05 14_[+3]_98 chr3R:7081990-7082110 2.9e-05 94_[+3]_18 chr2L:21218810-21218930 2.9e-05 97_[+3]_15 chr3L:21058768-21058888 2.9e-05 48_[+3]_64 chr3R:16276313-16276433 2.9e-05 63_[+3]_49 chr2L:20911468-20911588 5.2e-05 106_[+3]_6 chr3L:8925799-8925919 5.2e-05 75_[+3]_37 chr3L:14195854-14195974 5.2e-05 47_[+3]_65 chrX:1215108-1215228 5.2e-05 3_[+3]_109 chr3R:20276115-20276235 5.2e-05 71_[+3]_41 chr3L:21476851-21476971 5.2e-05 16_[+3]_96 chr3R:9637556-9637676 0.0001 36_[+3]_76 chrX:3188563-3188683 0.0001 99_[+3]_13 chr2R:14009181-14009301 0.0001 103_[+3]_9 chrX:11660630-11660750 0.0001 28_[+3]_84 chr2L:12046587-12046707 0.0001 19_[+3]_93 chr2L:15910011-15910131 0.0001 54_[+3]_58 chr3L:16164077-16164197 0.0001 13_[+3]_99 chr2R:19141703-19141823 0.0001 15_[+3]_97 chr2R:6133434-6133554 0.0001 16_[+3]_96 chr3L:11328040-11328160 0.0001 33_[+3]_79 chr2R:12741240-12741360 0.0001 44_[+3]_68 chr2L:2494651-2494771 0.0001 41_[+3]_71 chr2L:564100-564220 0.0001 105_[+3]_7 chrX:6604842-6604962 0.0001 81_[+3]_31 chr3R:30812089-30812209 0.0001 50_[+3]_62 chr3L:11003049-11003169 0.0001 7_[+3]_105 chr2R:14488408-14488528 0.0001 65_[+3]_47 chr2L:18625512-18625632 0.00015 42_[+3]_70 chr3L:19073296-19073416 0.00015 61_[+3]_51 chr2R:8060298-8060418 0.00015 70_[+3]_42 chr3R:13817571-13817691 0.00015 56_[+3]_56 chrX:3357751-3357871 0.00017 10_[+3]_102 chrX:10363049-10363169 0.00017 32_[+3]_80 chr2L:2862588-2862708 0.00017 48_[+3]_64 chr3L:10666809-10666929 0.00019 107_[+3]_5 chr3R:26121898-26122018 0.00021 90_[+3]_22 chr2R:6971515-6971635 0.00021 19_[+3]_93 chr3L:18242252-18242372 0.00021 36_[+3]_76 chr2R:11594505-11594625 0.00021 41_[+3]_71 chrX:16573822-16573942 0.00023 73_[+3]_39 chr3L:9614595-9614715 0.00023 32_[+3]_80 chrX:5285944-5286064 0.00027 34_[+3]_78 chr3R:21349506-21349626 0.00027 30_[+3]_82 chr2L:6700792-6700912 0.00027 51_[+3]_61 chr3R:23176845-23176965 0.00027 59_[+3]_53 chr2R:20126281-20126401 0.00027 21_[+3]_91 chr2R:11792757-11792877 0.00027 73_[+3]_39 chrX:22837517-22837637 0.00029 55_[+3]_57 chr3R:22596623-22596743 0.00029 26_[+3]_86 chr2L:8692539-8692659 0.00029 5_[+3]_107 chr2R:9554076-9554196 0.00029 83_[+3]_29 chrX:19308172-19308292 0.00029 59_[+3]_53 chr2R:19845417-19845537 0.00029 79_[+3]_33 chr3R:18298281-18298401 0.00035 22_[+3]_90 chr3R:14818037-14818157 0.00035 78_[+3]_34 chr3L:18398310-18398430 0.00035 18_[+3]_94 chr3L:13032257-13032377 0.00035 20_[+3]_92 chrX:19839225-19839345 0.00035 72_[+3]_40 chrX:18404954-18405074 0.00039 94_[+3]_18 chrX:6279185-6279305 0.00039 84_[+3]_28 chr3L:2468665-2468785 0.00039 26_[+3]_86 chrX:487605-487725 0.00046 9_[+3]_103 chr3L:21057178-21057298 0.00046 49_[+3]_63 chr2L:11331831-11331951 0.00046 90_[+3]_22 chr3R:14361754-14361874 0.00046 36_[+3]_76 chr3R:13016282-13016402 0.00046 69_[+3]_43 chr2L:13082308-13082428 0.00046 4_[+3]_108 chr3L:3970552-3970672 0.00046 101_[+3]_11 chrX:17582784-17582904 0.00046 45_[+3]_67 chr2R:17869421-17869541 0.00049 24_[+3]_88 chr2L:9570835-9570955 0.00053 36_[+3]_76 chr3L:12045668-12045788 0.00053 68_[+3]_44 chr3L:15563540-15563660 0.00053 85_[+3]_27 chr3R:24518174-24518294 0.00056 [+3]_112 chr2L:20758364-20758484 0.00056 84_[+3]_28 chr2L:6283431-6283551 0.00064 42_[+3]_70 chr3L:5926144-5926264 0.00064 63_[+3]_49 chr2R:17699028-17699148 0.00064 73_[+3]_39 chr2L:7049010-7049130 0.00068 96_[+3]_16 chr2R:18202717-18202837 0.00068 51_[+3]_61 chr2L:13838800-13838920 0.00068 47_[+3]_65 chr2R:21323895-21324015 0.00077 52_[+3]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTT MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WKTTGTTT width=8 seqs=84 chr3R:8180569-8180689 ( 43) TTTTGTTT 1 chr2R:8122901-8123021 ( 15) TTTTGTTT 1 chr3R:7081990-7082110 ( 95) TTTTGTTT 1 chr2L:21218810-21218930 ( 98) TTTTGTTT 1 chr3L:21058768-21058888 ( 49) TTTTGTTT 1 chr3R:16276313-16276433 ( 64) TTTTGTTT 1 chr2L:20911468-20911588 ( 107) TGTTGTTT 1 chr3L:8925799-8925919 ( 76) TGTTGTTT 1 chr3L:14195854-14195974 ( 48) TGTTGTTT 1 chrX:1215108-1215228 ( 4) TGTTGTTT 1 chr3R:20276115-20276235 ( 72) TGTTGTTT 1 chr3L:21476851-21476971 ( 17) TGTTGTTT 1 chr3R:9637556-9637676 ( 37) ATTTGTTT 1 chrX:3188563-3188683 ( 100) ATTTGTTT 1 chr2R:14009181-14009301 ( 104) CTTTGTTT 1 chrX:11660630-11660750 ( 29) ATTTGTTT 1 chr2L:12046587-12046707 ( 20) ATTTGTTT 1 chr2L:15910011-15910131 ( 55) ATTTGTTT 1 chr3L:16164077-16164197 ( 14) CTTTGTTT 1 chr2R:19141703-19141823 ( 16) ATTTGTTT 1 chr2R:6133434-6133554 ( 17) ATTTGTTT 1 chr3L:11328040-11328160 ( 34) ATTTGTTT 1 chr2R:12741240-12741360 ( 45) ATTTGTTT 1 chr2L:2494651-2494771 ( 42) CTTTGTTT 1 chr2L:564100-564220 ( 106) ATTTGTTT 1 chrX:6604842-6604962 ( 82) ATTTGTTT 1 chr3R:30812089-30812209 ( 51) CTTTGTTT 1 chr3L:11003049-11003169 ( 8) CTTTGTTT 1 chr2R:14488408-14488528 ( 66) ATTTGTTT 1 chr2L:18625512-18625632 ( 43) CGTTGTTT 1 chr3L:19073296-19073416 ( 62) CGTTGTTT 1 chr2R:8060298-8060418 ( 71) AGTTGTTT 1 chr3R:13817571-13817691 ( 57) CGTTGTTT 1 chrX:3357751-3357871 ( 11) TTCTGTTT 1 chrX:10363049-10363169 ( 33) TTCTGTTT 1 chr2L:2862588-2862708 ( 49) TTCTGTTT 1 chr3L:10666809-10666929 ( 108) TTTTGTTG 1 chr3R:26121898-26122018 ( 91) TTTCGTTT 1 chr2R:6971515-6971635 ( 20) TTTCGTTT 1 chr3L:18242252-18242372 ( 37) TTTCGTTT 1 chr2R:11594505-11594625 ( 42) TTTCGTTT 1 chrX:16573822-16573942 ( 74) TGCTGTTT 1 chr3L:9614595-9614715 ( 33) TGCTGTTT 1 chrX:5285944-5286064 ( 35) ATCTGTTT 1 chr3R:21349506-21349626 ( 31) ATCTGTTT 1 chr2L:6700792-6700912 ( 52) CTCTGTTT 1 chr3R:23176845-23176965 ( 60) ATCTGTTT 1 chr2R:20126281-20126401 ( 22) CTCTGTTT 1 chr2R:11792757-11792877 ( 74) CTCTGTTT 1 chrX:22837517-22837637 ( 56) TGTTGTTG 1 chr3R:22596623-22596743 ( 27) TGTTGTTG 1 chr2L:8692539-8692659 ( 6) TGTTGTTG 1 chr2R:9554076-9554196 ( 84) TGTTGTTG 1 chrX:19308172-19308292 ( 60) TGTTGTTG 1 chr2R:19845417-19845537 ( 80) TGTTGTTG 1 chr3R:18298281-18298401 ( 23) ATTTGTTG 1 chr3R:14818037-14818157 ( 79) TGTCGTTT 1 chr3L:18398310-18398430 ( 19) CTTTGTTG 1 chr3L:13032257-13032377 ( 21) ATTTGTTG 1 chrX:19839225-19839345 ( 73) ATTTGTTG 1 chrX:18404954-18405074 ( 95) CTTCGTTT 1 chrX:6279185-6279305 ( 85) ATTCGTTT 1 chr3L:2468665-2468785 ( 27) CTTCGTTT 1 chrX:487605-487725 ( 10) CGCTGTTT 1 chr3L:21057178-21057298 ( 50) TTTTTTTT 1 chr2L:11331831-11331951 ( 91) TTTTTTTT 1 chr3R:14361754-14361874 ( 37) AGCTGTTT 1 chr3R:13016282-13016402 ( 70) TTTTTTTT 1 chr2L:13082308-13082428 ( 5) TTTTTTTT 1 chr3L:3970552-3970672 ( 102) TTTTTTTT 1 chrX:17582784-17582904 ( 46) TTTTTTTT 1 chr2R:17869421-17869541 ( 25) AGTTGTTG 1 chr2L:9570835-9570955 ( 37) CGTCGTTT 1 chr3L:12045668-12045788 ( 69) AGTCGTTT 1 chr3L:15563540-15563660 ( 86) CGTCGTTT 1 chr3R:24518174-24518294 ( 1) TGTTTTTT 1 chr2L:20758364-20758484 ( 85) TGTTTTTT 1 chr2L:6283431-6283551 ( 43) TTCTGTTG 1 chr3L:5926144-5926264 ( 64) ATTTTTTT 1 chr2R:17699028-17699148 ( 74) CTTTTTTT 1 chr2L:7049010-7049130 ( 97) TTCCGTTT 1 chr2R:18202717-18202837 ( 52) GTTTGTTT 1 chr2L:13838800-13838920 ( 48) GTTTGTTT 1 chr2R:21323895-21324015 ( 53) CGTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTT MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.89693 E= 3.3e-001 3 2 -319 73 -1304 -1304 62 125 -1304 -32 -1304 155 -1304 -65 -1304 161 -1304 -1304 200 -110 -1304 -1304 -1304 184 -1304 -1304 -1304 184 -1304 -1304 -49 159 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTT MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 84 E= 3.3e-001 0.285714 0.226190 0.023810 0.464286 0.000000 0.000000 0.333333 0.666667 0.000000 0.178571 0.000000 0.821429 0.000000 0.142857 0.000000 0.857143 0.000000 0.000000 0.869048 0.130952 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.154762 0.845238 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WKTTGTTT MEME-3 regular expression -------------------------------------------------------------------------------- [TAC][TG]TTGTTT -------------------------------------------------------------------------------- Time 20.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CGTGCGCG MEME-4 width = 8 sites = 3 llr = 36 E-value = 2.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGTGCGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:::a:a: probability G :a:a:a:a matrix T ::a::::: bits 2.2 ** ***** 2.0 ** ***** 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (17.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGTGCGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:3336814-3336934 78 6.89e-06 TTTGACAAGA CGTGCGCG CGGACTGAAA chr3R:11372741-11372861 80 6.89e-06 AAGACAACAA CGTGCGCG GCTAAAAAAC chr3L:15336669-15336789 48 6.89e-06 AATCAGCCAA CGTGCGCG TTACATTACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:3336814-3336934 6.9e-06 77_[+4]_35 chr3R:11372741-11372861 6.9e-06 79_[+4]_33 chr3L:15336669-15336789 6.9e-06 47_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGTGCGCG width=8 seqs=3 chr3L:3336814-3336934 ( 78) CGTGCGCG 1 chr3R:11372741-11372861 ( 80) CGTGCGCG 1 chr3L:15336669-15336789 ( 48) CGTGCGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 2.6e+005 -823 216 -823 -823 -823 -823 220 -823 -823 -823 -823 183 -823 -823 220 -823 -823 216 -823 -823 -823 -823 220 -823 -823 216 -823 -823 -823 -823 220 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.6e+005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGTGCGCG MEME-4 regular expression -------------------------------------------------------------------------------- CGTGCGCG -------------------------------------------------------------------------------- Time 26.69 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCGGTGT MEME-5 width = 8 sites = 4 llr = 47 E-value = 3.8e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCGGTGT MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C a:a::::: probability G :a:aa:a: matrix T :::::a:a bits 2.2 ***** * 2.0 ***** * 1.8 ******** 1.5 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.8 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CGCGGTGT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:5217382-5217502 52 8.64e-06 GACATTTTTC CGCGGTGT GACCGCAGGC chr3R:29725736-29725856 92 8.64e-06 ACGGTCAATG CGCGGTGT GGTCACACTG chr3L:10734650-10734770 107 8.64e-06 CATTGCCTCC CGCGGTGT CAACTC chr2L:13838800-13838920 8 8.64e-06 GATTGTT CGCGGTGT TTATGCAAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:5217382-5217502 8.6e-06 51_[+5]_61 chr3R:29725736-29725856 8.6e-06 91_[+5]_21 chr3L:10734650-10734770 8.6e-06 106_[+5]_6 chr2L:13838800-13838920 8.6e-06 7_[+5]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCGGTGT width=8 seqs=4 chr3R:5217382-5217502 ( 52) CGCGGTGT 1 chr3R:29725736-29725856 ( 92) CGCGGTGT 1 chr3L:10734650-10734770 ( 107) CGCGGTGT 1 chr2L:13838800-13838920 ( 8) CGCGGTGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 3.8e+005 -865 216 -865 -865 -865 -865 220 -865 -865 216 -865 -865 -865 -865 220 -865 -865 -865 220 -865 -865 -865 -865 183 -865 -865 220 -865 -865 -865 -865 183 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.8e+005 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCGGTGT MEME-5 regular expression -------------------------------------------------------------------------------- CGCGGTGT -------------------------------------------------------------------------------- Time 32.84 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10239255-10239375 9.76e-01 120 chr2R:21611417-21611537 7.92e-02 72_[+1(3.28e-05)]_40 chr2R:21648183-21648303 7.61e-01 120 chr2R:14488408-14488528 5.41e-03 120 chr2L:9775319-9775439 3.00e-01 120 chr3L:698904-699024 1.65e-01 120 chr3L:8865336-8865456 3.65e-01 120 chr2R:22158052-22158172 5.28e-01 120 chr3R:11352961-11353081 4.95e-01 120 chr3L:6217920-6218040 7.42e-01 120 chr2L:17204052-17204172 3.93e-01 120 chr2R:13152132-13152252 5.80e-01 120 chr2L:2888570-2888690 1.00e+00 120 chr3L:10858611-10858731 3.85e-01 120 chr2L:9497315-9497435 7.36e-02 92_[+1(1.82e-05)]_20 chr3L:11492580-11492700 1.46e-01 120 chr2R:22540027-22540147 8.80e-01 120 chr3R:18412391-18412511 2.38e-01 120 chr2R:12916633-12916753 1.48e-01 120 chr3R:13817571-13817691 9.25e-03 69_[+1(7.03e-05)]_43 chr3L:2468665-2468785 3.76e-02 61_[+1(7.03e-05)]_51 chr3L:19618304-19618424 7.09e-01 120 chr3R:9762591-9762711 5.60e-01 120 chrX:15834394-15834514 6.45e-01 120 chr3R:14680524-14680644 3.96e-01 120 chr2R:13470258-13470378 8.73e-01 120 chr3L:11003049-11003169 1.31e-02 68_[+2(4.07e-05)]_44 chr3L:12482395-12482515 7.24e-02 93_[+1(7.03e-05)]_19 chrX:19839225-19839345 1.26e-01 120 chr2R:19845417-19845537 2.19e-02 120 chr3L:21476851-21476971 2.10e-01 16_[+3(5.20e-05)]_96 chr3L:639589-639709 3.18e-02 48_[+2(1.59e-05)]_64 chr2L:7544445-7544565 7.67e-02 120 chr3L:14028867-14028987 2.12e-02 48_[+2(1.59e-05)]_64 chrX:6279185-6279305 4.67e-02 120 chr3L:483960-484080 1.84e-02 85_[+1(1.82e-05)]_27 chr4:695171-695291 2.89e-01 120 chr3R:25660919-25661039 1.21e-02 99_[+2(9.15e-05)]_13 chr3R:23445351-23445471 2.65e-02 74_[+1(8.45e-05)]_28_[+1(7.03e-05)]_\ 2 chr2L:5303731-5303851 3.05e-01 54_[+1(8.45e-05)]_58 chr2L:13838800-13838920 2.27e-04 7_[+5(8.64e-06)]_4_[+1(3.28e-05)]_\ 93 chr3L:14549353-14549473 1.07e-01 111_[+1(7.03e-05)]_1 chrX:772747-772867 4.83e-01 120 chr2R:7243825-7243945 5.74e-01 120 chr3L:11708368-11708488 9.71e-02 104_[+2(1.59e-05)]_8 chr3L:6942741-6942861 1.76e-01 120 chr3R:15666140-15666260 2.47e-01 120 chr3R:5217178-5217298 6.67e-01 120 chr3R:7108245-7108365 4.01e-03 85_[+2(8.85e-06)]_27 chr3R:18297529-18297649 5.28e-01 120 chr3R:20276115-20276235 9.38e-02 71_[+3(5.20e-05)]_41 chr3R:30812089-30812209 5.72e-02 120 chr4:557472-557592 4.46e-01 120 chr3R:8664538-8664658 6.51e-01 120 chr2L:8415780-8415900 3.07e-02 24_[+2(4.07e-05)]_88 chr2R:8060298-8060418 2.30e-01 120 chr3R:16276313-16276433 3.37e-02 63_[+3(2.93e-05)]_49 chr2R:23668841-23668961 3.82e-01 120 chrX:6604842-6604962 3.08e-01 120 chr2L:20794055-20794175 5.30e-01 120 chr3L:224319-224439 2.74e-01 120 chrX:18837269-18837389 5.61e-01 120 chr3L:11489599-11489719 8.27e-02 120 chr3L:11358811-11358931 4.56e-01 120 chr3L:7859852-7859972 1.05e-01 [+1(1.82e-05)]_52_[+1(1.82e-05)]_52 chrX:17582784-17582904 6.67e-01 120 chr3L:15563540-15563660 1.52e-02 76_[+1(1.82e-05)]_36 chr3L:4193875-4193995 3.88e-02 120 chr3L:14564538-14564658 1.06e-02 82_[+1(7.03e-05)]_30 chr3L:15336669-15336789 3.07e-03 47_[+4(6.89e-06)]_27_[+2(4.07e-05)]_\ 30 chr2R:8242701-8242821 1.50e-02 120 chr2L:7828911-7829031 6.89e-01 120 chr3L:12045668-12045788 1.15e-01 120 chr2R:16951623-16951743 1.39e-03 9_[+2(2.47e-05)]_103 chr2R:24292834-24292954 2.37e-01 120 chr2L:20083549-20083669 7.80e-01 120 chr3R:21592190-21592310 1.47e-02 120 chr3L:10666809-10666929 3.18e-01 120 chr2L:564100-564220 6.11e-03 120 chr3R:4390140-4390260 2.31e-02 13_[+1(8.45e-05)]_99 chr3L:19073296-19073416 1.64e-02 120 chr2L:20758364-20758484 2.45e-01 120 chr2R:17272607-17272727 3.01e-01 120 chrX:6638244-6638364 7.29e-01 120 chr2R:13509531-13509651 2.23e-01 98_[+2(6.78e-05)]_14 chr3L:21058768-21058888 1.08e-03 48_[+3(2.93e-05)]_64 chr3R:30806385-30806505 5.66e-01 120 chr3L:16419484-16419604 7.63e-01 120 chr3L:3390742-3390862 5.52e-01 120 chrX:1026627-1026747 1.32e-01 120 chr3R:29068908-29069028 7.15e-01 120 chr2L:15254375-15254495 5.39e-01 120 chr2L:2494651-2494771 3.94e-03 63_[+1(3.28e-05)]_49 chr3L:8968644-8968764 3.52e-01 120 chr2R:12741240-12741360 1.91e-01 120 chr2R:10530709-10530829 7.92e-02 41_[+1(4.74e-05)]_71 chr2L:20327499-20327619 9.99e-02 120 chr2L:2862588-2862708 1.42e-02 120 chr3L:6467681-6467801 4.76e-01 120 chr2R:11594505-11594625 7.52e-02 120 chr3L:8763370-8763490 9.54e-01 120 chr3L:11328040-11328160 1.55e-01 120 chr2L:18625512-18625632 1.50e-01 120 chrX:16781220-16781340 9.99e-01 120 chrX:10745455-10745575 5.11e-01 120 chr2R:11792757-11792877 1.41e-02 48_[+1(1.82e-05)]_64 chr2R:10228085-10228205 1.04e-01 72_[+2(9.15e-05)]_40 chr2R:20091339-20091459 3.65e-01 120 chr2L:3856456-3856576 7.73e-01 120 chrX:9078384-9078504 6.21e-02 120 chr2L:21218810-21218930 2.39e-02 97_[+3(2.93e-05)]_15 chr2R:17869421-17869541 7.31e-02 120 chr2R:18202717-18202837 3.05e-02 120 chr2R:6133434-6133554 4.01e-03 45_[+2(6.78e-05)]_67 chr2L:10517048-10517168 4.53e-01 120 chrX:15591772-15591892 2.82e-01 120 chr3L:18791579-18791699 9.29e-01 120 chr2R:19290346-19290466 1.39e-01 120 chrX:10363049-10363169 5.20e-01 120 chr3R:32051694-32051814 3.45e-01 120 chr2R:16832925-16833045 1.37e-01 20_[+1(1.82e-05)]_92 chr3L:20954225-20954345 6.40e-01 120 chr3L:18242252-18242372 4.74e-01 120 chr3L:10734650-10734770 6.59e-03 106_[+5(8.64e-06)]_6 chr3L:3970552-3970672 5.91e-01 120 chr3L:9614595-9614715 1.00e-01 120 chr2L:13082308-13082428 3.17e-02 86_[+1(1.82e-05)]_26 chr2L:14409414-14409534 9.53e-01 120 chr2R:6971515-6971635 1.19e-02 120 chr3L:4614023-4614143 7.08e-02 120 chr3R:30815073-30815193 1.30e-02 108_[+2(4.07e-05)]_4 chr2R:19141703-19141823 9.65e-04 97_[+1(1.82e-05)]_15 chr2L:13878949-13879069 3.49e-01 120 chr3R:11372741-11372861 7.91e-04 1_[+2(5.64e-05)]_70_[+4(6.89e-06)]_\ 33 chr2R:12274328-12274448 1.38e-01 47_[+2(2.47e-05)]_65 chr3R:7081990-7082110 1.35e-01 94_[+3(2.93e-05)]_18 chr3R:18315485-18315605 7.43e-01 120 chr3L:7359916-7360036 2.99e-01 120 chr3L:13032257-13032377 1.76e-01 120 chr2L:7293669-7293789 7.50e-01 120 chr2L:19791704-19791824 4.29e-01 120 chr2R:9692775-9692895 4.62e-02 120 chrX:19308172-19308292 2.20e-01 120 chr2R:11541237-11541357 2.20e-01 46_[+1(1.82e-05)]_66 chr2L:5093375-5093495 7.90e-02 120 chr3L:18398310-18398430 9.13e-03 120 chrX:6663267-6663387 3.72e-01 120 chrX:19348944-19349064 9.85e-01 120 chr2R:17699028-17699148 1.13e-01 120 chr3L:16164077-16164197 1.11e-02 22_[+2(4.07e-05)]_90 chrX:1215108-1215228 1.06e-02 3_[+3(5.20e-05)]_43_[+2(5.64e-05)]_\ 58 chrX:18404954-18405074 2.46e-01 120 chr3L:3760716-3760836 9.87e-01 120 chrX:5084925-5085045 2.09e-01 120 chrX:17473376-17473496 3.51e-02 111_[+1(8.45e-05)]_1 chr2L:10767906-10768026 2.07e-01 120 chr3R:30802276-30802396 1.67e-01 30_[+1(4.74e-05)]_82 chr3L:14195854-14195974 6.87e-02 47_[+3(5.20e-05)]_65 chr3L:5926144-5926264 1.39e-01 120 chrX:13789147-13789267 9.09e-01 120 chr3R:26011645-26011765 9.08e-01 120 chr2R:9554076-9554196 2.40e-02 120 chr3R:10521328-10521448 4.75e-01 120 chr2L:15910011-15910131 1.13e-02 120 chr2L:12351024-12351144 6.16e-01 120 chrX:16573822-16573942 7.71e-03 120 chr2L:12046587-12046707 2.33e-01 120 chrX:11660630-11660750 9.45e-03 89_[+2(4.95e-05)]_23 chr3R:12422719-12422839 6.33e-01 120 chr2L:9570835-9570955 2.02e-02 15_[+1(7.03e-05)]_97 chr3L:3336814-3336934 1.67e-02 77_[+4(6.89e-06)]_35 chr2R:12037208-12037328 8.42e-01 120 chr3R:13016282-13016402 5.98e-02 108_[+2(9.15e-05)]_4 chr2R:17514160-17514280 3.05e-01 120 chr2R:21323895-21324015 5.26e-01 120 chr2R:8122901-8123021 3.74e-02 14_[+3(2.93e-05)]_98 chr3R:24518174-24518294 3.18e-03 100_[+1(7.03e-05)]_12 chr2R:20126281-20126401 5.80e-01 120 chr3R:15644893-15645013 7.08e-01 120 chr2R:18583365-18583485 2.96e-01 120 chr3L:5654714-5654834 6.84e-03 11_[+2(5.64e-05)]_101 chrX:618695-618815 6.88e-01 120 chrX:3845631-3845751 6.30e-01 120 chr2R:13429975-13430095 3.45e-01 120 chr3L:8925799-8925919 2.80e-01 75_[+3(5.20e-05)]_37 chr3L:20944363-20944483 9.51e-03 1_[+1(1.82e-05)]_5_[+1(1.82e-05)]_4_\ [+2(5.64e-05)]_48_[+1(1.82e-05)]_30 chr3L:16544374-16544494 5.56e-01 120 chr2R:7150705-7150825 3.15e-02 36_[+4(6.89e-06)]_76 chr3L:11429742-11429862 9.73e-01 120 chrX:3357751-3357871 1.27e-01 120 chr3R:23176845-23176965 2.16e-01 120 chr2L:12463270-12463390 6.37e-02 120 chr2L:6700792-6700912 8.54e-02 120 chr3R:26121898-26122018 9.73e-02 120 chrX:11548908-11549028 8.74e-01 120 chr3R:14361754-14361874 9.03e-02 120 chr2L:13205399-13205519 1.16e-01 120 chrX:5968192-5968312 9.40e-01 120 chr2R:14009181-14009301 6.54e-02 120 chrX:12660195-12660315 6.05e-02 41_[+1(1.82e-05)]_71 chr2L:6179145-6179265 3.71e-01 120 chr3R:20833108-20833228 3.83e-01 120 chr3R:21349506-21349626 3.88e-02 120 chrX:5285944-5286064 6.62e-01 120 chr3R:22147626-22147746 3.59e-01 70_[+1(7.03e-05)]_42 chr3R:15983749-15983869 9.50e-01 120 chr3R:21850309-21850429 6.33e-01 120 chr2L:7049010-7049130 7.89e-01 120 chr3R:28859139-28859259 2.01e-02 39_[+2(4.95e-05)]_73 chrX:3188563-3188683 4.00e-01 120 chr3R:29725736-29725856 4.10e-02 91_[+5(8.64e-06)]_21 chr3R:14818037-14818157 2.91e-03 3_[+2(4.07e-05)]_1_[+2(4.07e-05)]_\ 100 chr3R:9637556-9637676 3.86e-01 120 chr3R:20259670-20259790 7.43e-02 89_[+1(3.28e-05)]_23 chr2L:9613416-9613536 2.47e-01 120 chr3L:14672822-14672942 1.14e-02 40_[+1(7.03e-05)]_72 chr3R:22133833-22133953 5.69e-01 120 chr2L:11331831-11331951 6.73e-01 120 chr3R:23157809-23157929 8.36e-03 3_[+2(2.47e-05)]_109 chr3R:8180569-8180689 2.08e-01 42_[+3(2.93e-05)]_70 chr3L:21057178-21057298 4.41e-01 120 chr2L:6283431-6283551 5.27e-03 72_[+2(6.78e-05)]_40 chr2R:6707826-6707946 3.77e-01 120 chr2L:19867038-19867158 7.47e-01 120 chrX:16834333-16834453 7.41e-01 120 chr3R:24582560-24582680 3.57e-02 120 chr2L:8692539-8692659 5.88e-02 120 chrX:7935831-7935951 6.32e-01 120 chr3L:21821998-21822118 8.71e-01 120 chr3R:22596623-22596743 4.91e-03 120 chr3R:25885258-25885378 6.19e-02 65_[+1(1.82e-05)]_47 chrX:22837517-22837637 2.92e-01 120 chrX:487605-487725 7.82e-02 120 chr3L:4626042-4626162 2.54e-01 120 chr2R:12259399-12259519 5.53e-01 120 chr2L:8950356-8950476 8.26e-01 120 chrX:5901924-5902044 6.47e-01 120 chr3L:14956385-14956505 3.88e-01 120 chr3R:26130717-26130837 1.06e-01 18_[+1(7.03e-05)]_94 chr2L:5980803-5980923 4.97e-01 120 chr2L:484303-484423 2.29e-01 120 chr3L:10516011-10516131 4.02e-02 120 chr2L:901569-901689 8.93e-01 120 chr2L:19190352-19190472 3.28e-01 120 chr3R:18298281-18298401 3.32e-02 120 chr3R:5217382-5217502 1.70e-02 51_[+5(8.64e-06)]_61 chr2L:21309960-21310080 2.87e-01 120 chr2R:25032096-25032216 8.46e-02 111_[+2(4.07e-05)]_1 chr3R:6667341-6667461 3.01e-01 62_[+1(4.74e-05)]_50 chr2L:20911468-20911588 5.78e-02 106_[+3(5.20e-05)]_6 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c23n04.farnam.hpc.yale.internal ********************************************************************************