******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10979.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:14547033-14547153 1.0000 120 chrX:16846731-16846851 1.0000 120 chr3R:13077382-13077502 1.0000 120 chr3R:9695140-9695260 1.0000 120 chr3L:6689081-6689201 1.0000 120 chrX:16244844-16244964 1.0000 120 chr3L:16884239-16884359 1.0000 120 chr2L:4418156-4418276 1.0000 120 chr2L:4196387-4196507 1.0000 120 chrX:17695777-17695897 1.0000 120 chrX:10206217-10206337 1.0000 120 chr3R:25112704-25112824 1.0000 120 chr2R:19632938-19633058 1.0000 120 chr2R:11131609-11131729 1.0000 120 chrX:17697772-17697892 1.0000 120 chr2R:12521326-12521446 1.0000 120 chr2R:23960920-23961040 1.0000 120 chrX:20632186-20632306 1.0000 120 chr2L:5329221-5329341 1.0000 120 chrX:20239202-20239322 1.0000 120 chrX:12568723-12568843 1.0000 120 chr3R:15468147-15468267 1.0000 120 chr2R:15851497-15851617 1.0000 120 chr2R:19148098-19148218 1.0000 120 chrX:15385802-15385922 1.0000 120 chr2R:21700082-21700202 1.0000 120 chr3R:21252612-21252732 1.0000 120 chrX:3481057-3481177 1.0000 120 chr2R:21312931-21313051 1.0000 120 chrX:13587022-13587142 1.0000 120 chrX:3674982-3675102 1.0000 120 chr2R:23601862-23601982 1.0000 120 chrX:13204865-13204985 1.0000 120 chr3R:14577385-14577505 1.0000 120 chrX:1968255-1968375 1.0000 120 chrX:19325837-19325957 1.0000 120 chr3R:14098646-14098766 1.0000 120 chr3R:15146554-15146674 1.0000 120 chr2L:13763273-13763393 1.0000 120 chr3L:20498335-20498455 1.0000 120 chr2R:22161795-22161915 1.0000 120 chr3R:11208915-11209035 1.0000 120 chrX:1523409-1523529 1.0000 120 chr2L:10108893-10109013 1.0000 120 chrX:17870740-17870860 1.0000 120 chrX:6253806-6253926 1.0000 120 chrX:7801219-7801339 1.0000 120 chrX:16820791-16820911 1.0000 120 chr3L:15174993-15175113 1.0000 120 chr3L:13845394-13845514 1.0000 120 chr2R:15818591-15818711 1.0000 120 chr3L:12444172-12444292 1.0000 120 chr2R:11039138-11039258 1.0000 120 chrX:1300059-1300179 1.0000 120 chr2L:11494066-11494186 1.0000 120 chr2L:683229-683349 1.0000 120 chr2R:18937909-18938029 1.0000 120 chr2R:11553515-11553635 1.0000 120 chr2R:16673041-16673161 1.0000 120 chrX:23067670-23067790 1.0000 120 chr3R:18381388-18381508 1.0000 120 chrX:17716953-17717073 1.0000 120 chr2R:21134011-21134131 1.0000 120 chrX:5358931-5359051 1.0000 120 chr2R:23004983-23005103 1.0000 120 chr3L:20700733-20700853 1.0000 120 chrX:1772703-1772823 1.0000 120 chrX:14846503-14846623 1.0000 120 chr3L:12717660-12717780 1.0000 120 chr2R:19794358-19794478 1.0000 120 chr3R:29087610-29087730 1.0000 120 chr4:835956-836076 1.0000 120 chrX:17091178-17091298 1.0000 120 chr3L:6159980-6160100 1.0000 120 chr2R:12020649-12020769 1.0000 120 chr2L:9586095-9586215 1.0000 120 chr3R:29716108-29716228 1.0000 120 chrX:9020229-9020349 1.0000 120 chr2L:17963829-17963949 1.0000 120 chr3L:4400057-4400177 1.0000 120 chr3L:7522016-7522136 1.0000 120 chr3L:6834696-6834816 1.0000 120 chr3L:15775675-15775795 1.0000 120 chr3R:29799045-29799165 1.0000 120 chrX:20721813-20721933 1.0000 120 chr3L:5989506-5989626 1.0000 120 chrX:7162631-7162751 1.0000 120 chr3R:13548222-13548342 1.0000 120 chr3L:16743991-16744111 1.0000 120 chrX:9615564-9615684 1.0000 120 chr3R:6674697-6674817 1.0000 120 chr3R:19370810-19370930 1.0000 120 chr2L:8787720-8787840 1.0000 120 chr2L:14160971-14161091 1.0000 120 chr2L:3855655-3855775 1.0000 120 chr3L:6830192-6830312 1.0000 120 chrX:10330002-10330122 1.0000 120 chr2R:21883193-21883313 1.0000 120 chr3L:15320366-15320486 1.0000 120 chrX:1660409-1660529 1.0000 120 chr3L:13227010-13227130 1.0000 120 chr3L:11309906-11310026 1.0000 120 chr2R:20027190-20027310 1.0000 120 chr3R:27826322-27826442 1.0000 120 chr3R:10203690-10203810 1.0000 120 chr2L:20936586-20936706 1.0000 120 chr3L:4691903-4692023 1.0000 120 chr3R:23900215-23900335 1.0000 120 chr2L:7302871-7302991 1.0000 120 chr3R:14748496-14748616 1.0000 120 chr3R:8920251-8920371 1.0000 120 chr3L:16747146-16747266 1.0000 120 chr3L:13411166-13411286 1.0000 120 chr3L:18404477-18404597 1.0000 120 chr3L:11351430-11351550 1.0000 120 chr3L:21727194-21727314 1.0000 120 chrX:12090320-12090440 1.0000 120 chrX:7556384-7556504 1.0000 120 chr2L:19373964-19374084 1.0000 120 chr3R:10568678-10568798 1.0000 120 chrX:19765632-19765752 1.0000 120 chrX:17720453-17720573 1.0000 120 chr2L:21020144-21020264 1.0000 120 chr3L:18290496-18290616 1.0000 120 chr2R:19924023-19924143 1.0000 120 chrX:18910954-18911074 1.0000 120 chrX:5646396-5646516 1.0000 120 chr2L:18895138-18895258 1.0000 120 chr2L:18906766-18906886 1.0000 120 chr2R:9200879-9200999 1.0000 120 chrX:17501691-17501811 1.0000 120 chr3L:10391110-10391230 1.0000 120 chrX:18207614-18207734 1.0000 120 chr3R:16801183-16801303 1.0000 120 chr3R:16510298-16510418 1.0000 120 chrX:9689233-9689353 1.0000 120 chr3R:30733240-30733360 1.0000 120 chr3R:10498703-10498823 1.0000 120 chr3L:14145768-14145888 1.0000 120 chr3R:25459305-25459425 1.0000 120 chr3L:14146519-14146639 1.0000 120 chr3L:14961185-14961305 1.0000 120 chr3L:1083423-1083543 1.0000 120 chr3L:6797606-6797726 1.0000 120 chr3L:15353899-15354019 1.0000 120 chrX:17799240-17799360 1.0000 120 chr3R:26801550-26801670 1.0000 120 chr3R:10370616-10370736 1.0000 120 chr3L:716210-716330 1.0000 120 chrX:18239453-18239573 1.0000 120 chrX:9295688-9295808 1.0000 120 chr3L:18225047-18225167 1.0000 120 chr3L:18227481-18227601 1.0000 120 chr3R:13448515-13448635 1.0000 120 chr2L:13893623-13893743 1.0000 120 chr3R:30022665-30022785 1.0000 120 chrX:4574099-4574219 1.0000 120 chr3L:7953046-7953166 1.0000 120 chr2L:3439641-3439761 1.0000 120 chr3L:18102202-18102322 1.0000 120 chr3L:19674449-19674569 1.0000 120 chrX:15364597-15364717 1.0000 120 chr3L:21585500-21585620 1.0000 120 chr2R:22135058-22135178 1.0000 120 chr3R:22886885-22887005 1.0000 120 chr2L:14690938-14691058 1.0000 120 chr3R:10449108-10449228 1.0000 120 chr3L:380952-381072 1.0000 120 chr2L:20204754-20204874 1.0000 120 chrX:8671764-8671884 1.0000 120 chr3R:14386239-14386359 1.0000 120 chr3L:15670580-15670700 1.0000 120 chr2L:3570034-3570154 1.0000 120 chrX:7166438-7166558 1.0000 120 chr3L:12063563-12063683 1.0000 120 chrX:8259989-8260109 1.0000 120 chr3R:29541510-29541630 1.0000 120 chr2L:3851463-3851583 1.0000 120 chr3L:5017661-5017781 1.0000 120 chr2L:5303020-5303140 1.0000 120 chr3R:21535466-21535586 1.0000 120 chrX:17471742-17471862 1.0000 120 chr3R:22719687-22719807 1.0000 120 chr3L:3435103-3435223 1.0000 120 chr2R:16091915-16092035 1.0000 120 chr3L:15330228-15330348 1.0000 120 chr2L:1738188-1738308 1.0000 120 chr3R:6816662-6816782 1.0000 120 chr2L:8552578-8552698 1.0000 120 chr3R:15146761-15146881 1.0000 120 chr2L:7616968-7617088 1.0000 120 chr3R:29696516-29696636 1.0000 120 chr2L:14212827-14212947 1.0000 120 chr3R:30734720-30734840 1.0000 120 chr3L:17404820-17404940 1.0000 120 chrX:18208632-18208752 1.0000 120 chrX:4581883-4582003 1.0000 120 chrX:3073723-3073843 1.0000 120 chr2R:22379252-22379372 1.0000 120 chr2L:11341090-11341210 1.0000 120 chr3L:10514962-10515082 1.0000 120 chr3R:10354054-10354174 1.0000 120 chr3R:14598098-14598218 1.0000 120 chr3R:10651106-10651226 1.0000 120 chr3R:26990265-26990385 1.0000 120 chr3L:6807648-6807768 1.0000 120 chr2L:4286261-4286381 1.0000 120 chr2R:21313132-21313252 1.0000 120 chrX:12923415-12923535 1.0000 120 chr3R:19108253-19108373 1.0000 120 chr3L:3978105-3978225 1.0000 120 chr2R:23003235-23003355 1.0000 120 chr2R:20126708-20126828 1.0000 120 chrX:21362962-21363082 1.0000 120 chr4:406947-407067 1.0000 120 chrX:21045763-21045883 1.0000 120 chr2R:14803456-14803576 1.0000 120 chr2L:9907533-9907653 1.0000 120 chr3L:16015934-16016054 1.0000 120 chrX:12249011-12249131 1.0000 120 chr3L:7634884-7635004 1.0000 120 chr3L:6885777-6885897 1.0000 120 chr3R:21830332-21830452 1.0000 120 chr3L:15199354-15199474 1.0000 120 chr2L:11326522-11326642 1.0000 120 chr2L:15432386-15432506 1.0000 120 chr2R:23739450-23739570 1.0000 120 chr3L:18243268-18243388 1.0000 120 chr2L:5445952-5446072 1.0000 120 chr3L:10756211-10756331 1.0000 120 chrX:18946963-18947083 1.0000 120 chrX:3096462-3096582 1.0000 120 chr3R:10636173-10636293 1.0000 120 chr3L:19179562-19179682 1.0000 120 chr2R:14915196-14915316 1.0000 120 chr3R:30865583-30865703 1.0000 120 chr3R:9159905-9160025 1.0000 120 chr2R:15919844-15919964 1.0000 120 chr3R:10626152-10626272 1.0000 120 chr3L:18225246-18225366 1.0000 120 chr3R:24580491-24580611 1.0000 120 chr3R:13885144-13885264 1.0000 120 chr2L:7295116-7295236 1.0000 120 chr3R:30814743-30814863 1.0000 120 chr2R:20091296-20091416 1.0000 120 chrX:457949-458069 1.0000 120 chr3L:15672941-15673061 1.0000 120 chr2L:3841094-3841214 1.0000 120 chr3L:1167035-1167155 1.0000 120 chr3R:6229181-6229301 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG10979/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10979.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.342 C 0.158 G 0.157 T 0.343 Background letter frequencies (from file dataset with add-one prior applied): A 0.342 C 0.158 G 0.157 T 0.343 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CGCCACCT MEME-1 width = 8 sites = 58 llr = 582 E-value = 5.4e-058 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCACCT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 1:::9:1: pos.-specific C 8:aa168: probability G :a:::111 matrix T :::::319 bits 2.7 ** 2.4 *** 2.1 *** 1.9 *** Relative 1.6 **** * Entropy 1.3 **** * (14.5 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGCCACCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACCT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30022665-30022785 53 1.81e-06 TCATCCCTGG CGCCACCT GTAGGCCTTG chr3R:23900215-23900335 67 1.81e-06 ACCACCAAAG CGCCACCT TCTGGTGATA chrX:7162631-7162751 62 1.81e-06 GACCACCAAA CGCCACCT GTTGGCCGGG chrX:17091178-17091298 46 1.81e-06 TTTGTGGTAG CGCCACCT GTGGGGCGCT chr2R:18937909-18938029 68 1.81e-06 GTCGGATATG CGCCACCT GTTGCTCAAA chrX:1300059-1300179 62 1.81e-06 ACAACCACAG CGCCACCT GCTGGTGTTG chr2R:15818591-15818711 104 1.81e-06 ACAAATGCAG CGCCACCT ATGCGGGCA chrX:16820791-16820911 57 1.81e-06 ACCACCAACA CGCCACCT GTCGTTCGGT chrX:17870740-17870860 40 1.81e-06 TGATCATGTT CGCCACCT GGCGGCAAGT chr3L:20498335-20498455 64 1.81e-06 ATGCCAGATG CGCCACCT GGCGGCGAGC chr3R:14098646-14098766 61 1.81e-06 CTGCAGTCAA CGCCACCT GTTGGCAGCT chrX:19325837-19325957 87 1.81e-06 TTTAACCTAG CGCCACCT GTGTTAATCT chr3R:14577385-14577505 86 1.81e-06 AAGATTAGCG CGCCACCT AGCGGTCGGA chrX:3674982-3675102 63 1.81e-06 CGACAGATGG CGCCACCT GATGATATCA chrX:3481057-3481177 44 1.81e-06 CTTTCCTCGG CGCCACCT AGTGTTGCGT chr2R:12521326-12521446 79 1.81e-06 CGCTAGGTGT CGCCACCT GATCATATTA chr2R:19632938-19633058 63 1.81e-06 TCCACTAAGG CGCCACCT GTTGCTAATC chr3R:25112704-25112824 53 1.81e-06 CTCTTTCCAT CGCCACCT GTTGTCAGGA chrX:10206217-10206337 62 1.81e-06 ATCACCTGAA CGCCACCT GGCGGTGAAG chr2L:4418156-4418276 23 1.81e-06 TGCCAGCAGA CGCCACCT AGCGGACGGT chrX:16244844-16244964 106 1.81e-06 ATGAGCAGAT CGCCACCT ATGTTTT chr3R:13077382-13077502 72 1.81e-06 aataccaata CGCCACCT GGTGATCCTA chr2L:11494066-11494186 57 2.65e-06 GAATGGAATA CGCCCCCT AGGTGGCGCT chr2L:17963829-17963949 97 8.39e-06 TTAACCAATG CGCCATCT ACCGCGAATA chr3R:29716108-29716228 59 8.39e-06 GATGCACTGG CGCCATCT GTTGCTGAGC chrX:1523409-1523529 42 8.39e-06 AAGTGTGGAG CGCCATCT GTTAGACGAT chr2R:22161795-22161915 52 8.39e-06 AATACCAAAG CGCCATCT GTTGGAGGTC chrX:13587022-13587142 55 8.39e-06 CGCTTGGTGG CGCCATCT ATGTATGGTT chr2R:15851497-15851617 55 8.39e-06 ACCACAGCAG CGCCATCT ATGGGTCGCG chr2L:4196387-4196507 53 8.39e-06 CTATCAAGAG CGCCATCT GTTGGCGACA chr2R:14547033-14547153 16 8.39e-06 ATCATCAATG CGCCATCT GTGGGCCGAA chrX:1660409-1660529 54 1.31e-05 GTAGAATCTA AGCCACCT GTCGGGCGCT chr3R:18381388-18381508 62 1.31e-05 GTGTCTAGAA AGCCACCT GTCGGGGGCT chr3R:15468147-15468267 60 1.31e-05 CTACTGGCTG AGCCACCT AGCGGCAGCT chr3R:30814743-30814863 43 1.76e-05 ACGACCAGCA CGCCCTCT GGCGGCGACA chr3L:11351430-11351550 63 1.76e-05 TGATCATTGC CGCCCTCT GTGGGGGAAA chr3L:13845394-13845514 30 1.76e-05 GACACCAATG CGCCCTCT AGCGAGCTAC chrX:17697772-17697892 37 1.76e-05 GATACACAGG CGCCCTCT GTTGAAAAGG chr3R:27826322-27826442 22 1.94e-05 GTCTATTACT GGCCACCT AAGATAGTAA chrX:17720453-17720573 38 2.37e-05 CAACAGGTGG CGCCACTT AGTGATAATG chr2R:21313132-21313252 54 2.76e-05 CTCACGTAGG CGCCACAT GTCAATAGCA chr3R:26990265-26990385 65 3.21e-05 ATGTAGATGG CGCCAGCG GGCGACTATG chr2L:11326522-11326642 46 5.11e-05 TTAGAATTAT AGCCATCT GAAAAACACC chr2R:22379252-22379372 32 5.11e-05 TCTCCGATAT AGCCAGCT ACTCAACCCG chr3L:1083423-1083543 3 5.11e-05 CG AGCCAGCT GTTTAGAATC chrX:10330002-10330122 110 5.11e-05 AAAGCATTGA CTCCACCT AGC chr2L:13763273-13763393 69 5.11e-05 ACCACCAAAG CTCCACCT AGCGGCGGTA chr3R:29087610-29087730 30 5.76e-05 GAAAACTAAC CGCCAGGT GGCGCTGTTA chrX:23067670-23067790 52 5.76e-05 ATGTAACAGC CGCCAGGT GGCGCGCATC chr2L:10108893-10109013 55 5.76e-05 TAATTGTCAC CGCCAGGT GGCGGGTTGG chr2R:21700082-21700202 81 5.95e-05 GTGTTGCGGC CGCCCCTT GTGCATGTGG chr3R:21252612-21252732 47 6.13e-05 TTGCATATTA AGCCACCG GATGGCGTGT chr2R:21312931-21313051 74 6.88e-05 AACACTCATA GGCCATCT ACCGGCAGCC chr2R:15919844-15919964 29 9.65e-05 TTAGACCACA CGCCATAT AAAATATGAA chr3R:29799045-29799165 74 9.65e-05 ATGATGTGAA CGCCCCCA GCAGTGCGAA chrX:13204865-13204985 54 9.65e-05 CGCTACCCAC CGCCAGAT GGACGCCGCG chr3R:9695140-9695260 7 1.11e-04 TTGCGT CGCCACTG GGGTAGCCGA chr2L:3570034-3570154 112 1.43e-04 TAAATTCACA AGCCACTT A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACCT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30022665-30022785 1.8e-06 52_[+1]_60 chr3R:23900215-23900335 1.8e-06 66_[+1]_46 chrX:7162631-7162751 1.8e-06 61_[+1]_51 chrX:17091178-17091298 1.8e-06 45_[+1]_67 chr2R:18937909-18938029 1.8e-06 67_[+1]_45 chrX:1300059-1300179 1.8e-06 61_[+1]_51 chr2R:15818591-15818711 1.8e-06 103_[+1]_9 chrX:16820791-16820911 1.8e-06 56_[+1]_56 chrX:17870740-17870860 1.8e-06 39_[+1]_73 chr3L:20498335-20498455 1.8e-06 63_[+1]_49 chr3R:14098646-14098766 1.8e-06 60_[+1]_52 chrX:19325837-19325957 1.8e-06 86_[+1]_26 chr3R:14577385-14577505 1.8e-06 85_[+1]_27 chrX:3674982-3675102 1.8e-06 62_[+1]_50 chrX:3481057-3481177 1.8e-06 43_[+1]_69 chr2R:12521326-12521446 1.8e-06 78_[+1]_34 chr2R:19632938-19633058 1.8e-06 62_[+1]_50 chr3R:25112704-25112824 1.8e-06 52_[+1]_60 chrX:10206217-10206337 1.8e-06 61_[+1]_51 chr2L:4418156-4418276 1.8e-06 22_[+1]_90 chrX:16244844-16244964 1.8e-06 105_[+1]_7 chr3R:13077382-13077502 1.8e-06 71_[+1]_41 chr2L:11494066-11494186 2.7e-06 56_[+1]_56 chr2L:17963829-17963949 8.4e-06 96_[+1]_16 chr3R:29716108-29716228 8.4e-06 58_[+1]_54 chrX:1523409-1523529 8.4e-06 41_[+1]_71 chr2R:22161795-22161915 8.4e-06 51_[+1]_61 chrX:13587022-13587142 8.4e-06 54_[+1]_58 chr2R:15851497-15851617 8.4e-06 54_[+1]_58 chr2L:4196387-4196507 8.4e-06 52_[+1]_60 chr2R:14547033-14547153 8.4e-06 15_[+1]_97 chrX:1660409-1660529 1.3e-05 53_[+1]_59 chr3R:18381388-18381508 1.3e-05 61_[+1]_51 chr3R:15468147-15468267 1.3e-05 59_[+1]_53 chr3R:30814743-30814863 1.8e-05 42_[+1]_70 chr3L:11351430-11351550 1.8e-05 62_[+1]_50 chr3L:13845394-13845514 1.8e-05 29_[+1]_83 chrX:17697772-17697892 1.8e-05 36_[+1]_76 chr3R:27826322-27826442 1.9e-05 21_[+1]_91 chrX:17720453-17720573 2.4e-05 37_[+1]_75 chr2R:21313132-21313252 2.8e-05 53_[+1]_59 chr3R:26990265-26990385 3.2e-05 64_[+1]_48 chr2L:11326522-11326642 5.1e-05 45_[+1]_67 chr2R:22379252-22379372 5.1e-05 31_[+1]_81 chr3L:1083423-1083543 5.1e-05 2_[+1]_110 chrX:10330002-10330122 5.1e-05 109_[+1]_3 chr2L:13763273-13763393 5.1e-05 68_[+1]_44 chr3R:29087610-29087730 5.8e-05 29_[+1]_83 chrX:23067670-23067790 5.8e-05 51_[+1]_61 chr2L:10108893-10109013 5.8e-05 54_[+1]_58 chr2R:21700082-21700202 5.9e-05 80_[+1]_32 chr3R:21252612-21252732 6.1e-05 46_[+1]_66 chr2R:21312931-21313051 6.9e-05 73_[+1]_39 chr2R:15919844-15919964 9.7e-05 28_[+1]_84 chr3R:29799045-29799165 9.7e-05 73_[+1]_39 chrX:13204865-13204985 9.7e-05 53_[+1]_59 chr3R:9695140-9695260 0.00011 6_[+1]_106 chr2L:3570034-3570154 0.00014 111_[+1]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACCT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCACCT width=8 seqs=58 chr3R:30022665-30022785 ( 53) CGCCACCT 1 chr3R:23900215-23900335 ( 67) CGCCACCT 1 chrX:7162631-7162751 ( 62) CGCCACCT 1 chrX:17091178-17091298 ( 46) CGCCACCT 1 chr2R:18937909-18938029 ( 68) CGCCACCT 1 chrX:1300059-1300179 ( 62) CGCCACCT 1 chr2R:15818591-15818711 ( 104) CGCCACCT 1 chrX:16820791-16820911 ( 57) CGCCACCT 1 chrX:17870740-17870860 ( 40) CGCCACCT 1 chr3L:20498335-20498455 ( 64) CGCCACCT 1 chr3R:14098646-14098766 ( 61) CGCCACCT 1 chrX:19325837-19325957 ( 87) CGCCACCT 1 chr3R:14577385-14577505 ( 86) CGCCACCT 1 chrX:3674982-3675102 ( 63) CGCCACCT 1 chrX:3481057-3481177 ( 44) CGCCACCT 1 chr2R:12521326-12521446 ( 79) CGCCACCT 1 chr2R:19632938-19633058 ( 63) CGCCACCT 1 chr3R:25112704-25112824 ( 53) CGCCACCT 1 chrX:10206217-10206337 ( 62) CGCCACCT 1 chr2L:4418156-4418276 ( 23) CGCCACCT 1 chrX:16244844-16244964 ( 106) CGCCACCT 1 chr3R:13077382-13077502 ( 72) CGCCACCT 1 chr2L:11494066-11494186 ( 57) CGCCCCCT 1 chr2L:17963829-17963949 ( 97) CGCCATCT 1 chr3R:29716108-29716228 ( 59) CGCCATCT 1 chrX:1523409-1523529 ( 42) CGCCATCT 1 chr2R:22161795-22161915 ( 52) CGCCATCT 1 chrX:13587022-13587142 ( 55) CGCCATCT 1 chr2R:15851497-15851617 ( 55) CGCCATCT 1 chr2L:4196387-4196507 ( 53) CGCCATCT 1 chr2R:14547033-14547153 ( 16) CGCCATCT 1 chrX:1660409-1660529 ( 54) AGCCACCT 1 chr3R:18381388-18381508 ( 62) AGCCACCT 1 chr3R:15468147-15468267 ( 60) AGCCACCT 1 chr3R:30814743-30814863 ( 43) CGCCCTCT 1 chr3L:11351430-11351550 ( 63) CGCCCTCT 1 chr3L:13845394-13845514 ( 30) CGCCCTCT 1 chrX:17697772-17697892 ( 37) CGCCCTCT 1 chr3R:27826322-27826442 ( 22) GGCCACCT 1 chrX:17720453-17720573 ( 38) CGCCACTT 1 chr2R:21313132-21313252 ( 54) CGCCACAT 1 chr3R:26990265-26990385 ( 65) CGCCAGCG 1 chr2L:11326522-11326642 ( 46) AGCCATCT 1 chr2R:22379252-22379372 ( 32) AGCCAGCT 1 chr3L:1083423-1083543 ( 3) AGCCAGCT 1 chrX:10330002-10330122 ( 110) CTCCACCT 1 chr2L:13763273-13763393 ( 69) CTCCACCT 1 chr3R:29087610-29087730 ( 30) CGCCAGGT 1 chrX:23067670-23067790 ( 52) CGCCAGGT 1 chr2L:10108893-10109013 ( 55) CGCCAGGT 1 chr2R:21700082-21700202 ( 81) CGCCCCTT 1 chr3R:21252612-21252732 ( 47) AGCCACCG 1 chr2R:21312931-21313051 ( 74) GGCCATCT 1 chr2R:15919844-15919964 ( 29) CGCCATAT 1 chr3R:29799045-29799165 ( 74) CGCCCCCA 1 chrX:13204865-13204985 ( 54) CGCCAGAT 1 chr3R:9695140-9695260 ( 7) CGCCACTG 1 chr2L:3570034-3570154 ( 112) AGCCACTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACCT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1759 E= 5.4e-058 -131 239 -219 -1250 -1250 -1250 262 -331 -1250 267 -1250 -1250 -1250 267 -1250 -1250 136 -38 -1250 -1250 -1250 198 -38 -41 -273 239 -160 -231 -431 -1250 -160 144 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACCT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 58 E= 5.4e-058 0.137931 0.827586 0.034483 0.000000 0.000000 0.000000 0.965517 0.034483 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.879310 0.120690 0.000000 0.000000 0.000000 0.620690 0.120690 0.258621 0.051724 0.827586 0.051724 0.068966 0.017241 0.000000 0.051724 0.931034 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCACCT MEME-1 regular expression -------------------------------------------------------------------------------- CGCCA[CT]CT -------------------------------------------------------------------------------- Time 7.36 secs. ******************************************************************************** ******************************************************************************** MOTIF GATGGCGC MEME-2 width = 8 sites = 26 llr = 282 E-value = 3.1e-019 ******************************************************************************** -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :7:::::: pos.-specific C :::::a:8 probability G a3:aa:8: matrix T ::a:::12 bits 2.7 ** 2.4 * *** 2.1 * *** 1.9 * **** Relative 1.6 * **** Entropy 1.3 * ****** (15.7 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GATGGCGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:21362962-21363082 47 1.78e-06 ATTGCCAACA GATGGCGC TGTTTGTCAC chr3R:10203690-10203810 83 1.78e-06 CCTGACAACA GATGGCGC TTTGTATCAT chr2L:14160971-14161091 68 1.78e-06 CTCACACAGA GATGGCGC CAACACTTAA chrX:1772703-1772823 65 1.78e-06 ACAGTCACCA GATGGCGC TACATATGTA chrX:19325837-19325957 55 1.78e-06 TTAACATGTA GATGGCGC TGGCATAATG chr2R:23960920-23961040 56 1.78e-06 TGCTAATGTA GATGGCGC TGTATCTTAA chr3L:6689081-6689201 80 1.78e-06 GCCAAATGTA GATGGCGC TGCATCATAG chr3R:9695140-9695260 77 1.78e-06 ATGTCCGACA GATGGCGC TGTGGTGATA chrX:16846731-16846851 57 1.78e-06 GCAGCCCATA GATGGCGC TGTGGTGAAA chrX:18239453-18239573 87 2.60e-06 CAAGCCGCTA GGTGGCGC TATGCAGTCA chr2L:11494066-11494186 66 2.60e-06 ACGCCCCCTA GGTGGCGC TGTGGTGTTA chrX:6253806-6253926 64 2.60e-06 CCAAACGCTA GGTGGCGC CAGGGGAGTG chr2R:23601862-23601982 59 2.60e-06 CTGTCCCATA GGTGGCGC GTTGGTTACG chrX:13587022-13587142 73 6.46e-06 ATGTATGGTT GATGGCGT GCACATTGTG chr3R:21252612-21252732 55 6.46e-06 TAAGCCACCG GATGGCGT GTTGGTGTTG chr2R:11131609-11131729 45 6.46e-06 CATTCCGCTC GATGGCGT ATtggtggtg chr4:406947-407067 88 9.05e-06 ATTTCCCACA GAGGGCGC CTGTAGTGGT chr2R:19148098-19148218 45 9.05e-06 ATGGCCCACA GGTGGCGT TGCATTCGTC chr3R:23900215-23900335 101 1.33e-05 CATTATCTGC GATGGCTC GCGAAATTTT chrX:20239202-20239322 63 1.33e-05 ATGACCGCTA GATGGCTC TGCAGATCAA chr2L:9907533-9907653 52 1.51e-05 GATATGAGCG GGTGGCTC GTTAAGTATA chr3R:30814743-30814863 61 1.69e-05 GGCGGCGACA GATGGCGG CTGTGGCTGT chrX:16244844-16244964 48 2.03e-05 CATACCATCT CGTGGCGC CATCTATGGA chrX:7162631-7162751 103 2.41e-05 TTGGCCCATA GATGGCGA CAGTATGCTT chr4:835956-836076 90 2.80e-05 ATTACCAACA GATGGCAC TTTTGCTACT chr3R:13077382-13077502 42 3.54e-05 agcagcatct gatggagc agcagcatct -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:21362962-21363082 1.8e-06 46_[+2]_66 chr3R:10203690-10203810 1.8e-06 82_[+2]_30 chr2L:14160971-14161091 1.8e-06 67_[+2]_45 chrX:1772703-1772823 1.8e-06 64_[+2]_48 chrX:19325837-19325957 1.8e-06 54_[+2]_58 chr2R:23960920-23961040 1.8e-06 55_[+2]_57 chr3L:6689081-6689201 1.8e-06 79_[+2]_33 chr3R:9695140-9695260 1.8e-06 76_[+2]_36 chrX:16846731-16846851 1.8e-06 56_[+2]_56 chrX:18239453-18239573 2.6e-06 86_[+2]_26 chr2L:11494066-11494186 2.6e-06 65_[+2]_47 chrX:6253806-6253926 2.6e-06 63_[+2]_49 chr2R:23601862-23601982 2.6e-06 58_[+2]_54 chrX:13587022-13587142 6.5e-06 72_[+2]_40 chr3R:21252612-21252732 6.5e-06 54_[+2]_58 chr2R:11131609-11131729 6.5e-06 44_[+2]_68 chr4:406947-407067 9e-06 87_[+2]_25 chr2R:19148098-19148218 9e-06 44_[+2]_68 chr3R:23900215-23900335 1.3e-05 100_[+2]_12 chrX:20239202-20239322 1.3e-05 62_[+2]_50 chr2L:9907533-9907653 1.5e-05 51_[+2]_61 chr3R:30814743-30814863 1.7e-05 60_[+2]_52 chrX:16244844-16244964 2e-05 47_[+2]_65 chrX:7162631-7162751 2.4e-05 102_[+2]_10 chr4:835956-836076 2.8e-05 89_[+2]_23 chr3R:13077382-13077502 3.5e-05 41_[+2]_71 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GATGGCGC width=8 seqs=26 chrX:21362962-21363082 ( 47) GATGGCGC 1 chr3R:10203690-10203810 ( 83) GATGGCGC 1 chr2L:14160971-14161091 ( 68) GATGGCGC 1 chrX:1772703-1772823 ( 65) GATGGCGC 1 chrX:19325837-19325957 ( 55) GATGGCGC 1 chr2R:23960920-23961040 ( 56) GATGGCGC 1 chr3L:6689081-6689201 ( 80) GATGGCGC 1 chr3R:9695140-9695260 ( 77) GATGGCGC 1 chrX:16846731-16846851 ( 57) GATGGCGC 1 chrX:18239453-18239573 ( 87) GGTGGCGC 1 chr2L:11494066-11494186 ( 66) GGTGGCGC 1 chrX:6253806-6253926 ( 64) GGTGGCGC 1 chr2R:23601862-23601982 ( 59) GGTGGCGC 1 chrX:13587022-13587142 ( 73) GATGGCGT 1 chr3R:21252612-21252732 ( 55) GATGGCGT 1 chr2R:11131609-11131729 ( 45) GATGGCGT 1 chr4:406947-407067 ( 88) GAGGGCGC 1 chr2R:19148098-19148218 ( 45) GGTGGCGT 1 chr3R:23900215-23900335 ( 101) GATGGCTC 1 chrX:20239202-20239322 ( 63) GATGGCTC 1 chr2L:9907533-9907653 ( 52) GGTGGCTC 1 chr3R:30814743-30814863 ( 61) GATGGCGG 1 chrX:16244844-16244964 ( 48) CGTGGCGC 1 chrX:7162631-7162751 ( 103) GATGGCGA 1 chr4:835956-836076 ( 90) GATGGCAC 1 chr3R:13077382-13077502 ( 42) GATGGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 3.1e-019 -1134 -203 261 -1134 109 -1134 78 -1134 -1134 -1134 -203 149 -1134 -1134 267 -1134 -1134 -1134 267 -1134 -315 261 -1134 -1134 -315 -1134 243 -157 -315 229 -203 -116 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 26 E= 3.1e-019 0.000000 0.038462 0.961538 0.000000 0.730769 0.000000 0.269231 0.000000 0.000000 0.000000 0.038462 0.961538 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.038462 0.961538 0.000000 0.000000 0.038462 0.000000 0.846154 0.115385 0.038462 0.769231 0.038462 0.153846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GATGGCGC MEME-2 regular expression -------------------------------------------------------------------------------- G[AG]TGGCGC -------------------------------------------------------------------------------- Time 13.53 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGSSGC MEME-3 width = 8 sites = 19 llr = 192 E-value = 1.0e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGSSGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::7:11:: pos.-specific C :a11451a probability G a:28449: matrix T :::11::: bits 2.7 ** * 2.4 ** * 2.1 ** ** 1.9 ** * ** Relative 1.6 ** * ** Entropy 1.3 ** * ** (14.6 bits) 1.1 ** * *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGGCGC consensus G CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGSSGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15385802-15385922 44 8.20e-07 TTAACTTTGC GCAGGCGC CTATCTCTTT chr2R:11131609-11131729 112 8.20e-07 AACCTCGCCC GCAGGCGC C chrX:12568723-12568843 100 2.84e-06 ACCACCAATA GCGGGCGC TGTGGTATTT chr2R:15851497-15851617 77 3.65e-06 GTCGCGTGTT GCAGCGGC TCGCAAGTTT chr2L:4196387-4196507 94 3.65e-06 TTACCAGTGA GCAGCGGC TGGACAACGC chr2L:4418156-4418276 62 4.41e-06 GGCAACATAT GCGGGGGC CACCTGTTGT chrX:1660409-1660529 83 5.54e-06 CCGGTACTCA GCCGCCGC CCCCGCACTT chrX:7162631-7162751 74 5.92e-06 CCACCTGTTG GCCGGGGC AGTTTCAGCC chr2L:10108893-10109013 9 1.07e-05 CTTTAACT GCAGTCGC CAGACGGCAG chr3R:14098646-14098766 98 1.07e-05 AAAAAGTGCG GCAGGCCC CCTGCCGTCT chr3R:29799045-29799165 17 1.95e-05 TATGTGAGCG GCAGTGGC TGTCAAACCA chr3R:29716108-29716228 75 1.95e-05 CTGTTGCTGA GCAGAGGC GAGGGTGCAA chr3R:21252612-21252732 107 1.95e-05 AAAACATTTG GCAGGGCC AAAAGT chr3R:13077382-13077502 27 1.95e-05 agcatcagca gcagcagc agcatctgat chr3R:30022665-30022785 86 2.15e-05 CAACATAAGT GCGGACGC GAACCACAAG chr3L:11351430-11351550 35 2.61e-05 TTAATGATCA GCATGCGC CATCCCTATA chr3R:15146761-15146881 26 2.69e-05 TATCTCACTC GCACCCGC ACATACGCGC chr3R:10203690-10203810 66 3.16e-05 TGCTTACAGT GCATCCGC CTGACAACAG chr3R:15468147-15468267 69 3.16e-05 GAGCCACCTA GCGGCAGC TTGTGCGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGSSGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15385802-15385922 8.2e-07 43_[+3]_69 chr2R:11131609-11131729 8.2e-07 111_[+3]_1 chrX:12568723-12568843 2.8e-06 99_[+3]_13 chr2R:15851497-15851617 3.7e-06 76_[+3]_36 chr2L:4196387-4196507 3.7e-06 93_[+3]_19 chr2L:4418156-4418276 4.4e-06 61_[+3]_51 chrX:1660409-1660529 5.5e-06 82_[+3]_30 chrX:7162631-7162751 5.9e-06 73_[+3]_39 chr2L:10108893-10109013 1.1e-05 8_[+3]_104 chr3R:14098646-14098766 1.1e-05 97_[+3]_15 chr3R:29799045-29799165 1.9e-05 16_[+3]_96 chr3R:29716108-29716228 1.9e-05 74_[+3]_38 chr3R:21252612-21252732 1.9e-05 106_[+3]_6 chr3R:13077382-13077502 1.9e-05 26_[+3]_86 chr3R:30022665-30022785 2.1e-05 85_[+3]_27 chr3L:11351430-11351550 2.6e-05 34_[+3]_78 chr3R:15146761-15146881 2.7e-05 25_[+3]_87 chr3R:10203690-10203810 3.2e-05 65_[+3]_47 chr3R:15468147-15468267 3.2e-05 68_[+3]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGSSGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGSSGC width=8 seqs=19 chrX:15385802-15385922 ( 44) GCAGGCGC 1 chr2R:11131609-11131729 ( 112) GCAGGCGC 1 chrX:12568723-12568843 ( 100) GCGGGCGC 1 chr2R:15851497-15851617 ( 77) GCAGCGGC 1 chr2L:4196387-4196507 ( 94) GCAGCGGC 1 chr2L:4418156-4418276 ( 62) GCGGGGGC 1 chrX:1660409-1660529 ( 83) GCCGCCGC 1 chrX:7162631-7162751 ( 74) GCCGGGGC 1 chr2L:10108893-10109013 ( 9) GCAGTCGC 1 chr3R:14098646-14098766 ( 98) GCAGGCCC 1 chr3R:29799045-29799165 ( 17) GCAGTGGC 1 chr3R:29716108-29716228 ( 75) GCAGAGGC 1 chr3R:21252612-21252732 ( 107) GCAGGGCC 1 chr3R:13077382-13077502 ( 27) GCAGCAGC 1 chr3R:30022665-30022785 ( 86) GCGGACGC 1 chr3L:11351430-11351550 ( 35) GCATGCGC 1 chr3R:15146761-15146881 ( 26) GCACCCGC 1 chr3R:10203690-10203810 ( 66) GCATCCGC 1 chr3R:15468147-15468267 ( 69) GCGGCAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGSSGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 1.0e-001 -1089 -1089 267 -1089 -1089 267 -1089 -1089 100 -58 42 -1089 -1089 -158 242 -170 -170 123 142 -170 -170 174 123 -1089 -1089 -58 251 -1089 -1089 267 -1089 -1089 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGSSGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 19 E= 1.0e-001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.684211 0.105263 0.210526 0.000000 0.000000 0.052632 0.842105 0.105263 0.105263 0.368421 0.421053 0.105263 0.105263 0.526316 0.368421 0.000000 0.000000 0.105263 0.894737 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGSSGC MEME-3 regular expression -------------------------------------------------------------------------------- GC[AG]G[GC][CG]GC -------------------------------------------------------------------------------- Time 19.70 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGCRA MEME-4 width = 8 sites = 5 llr = 63 E-value = 1.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGCRA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::4a pos.-specific C ::a::a2: probability G aa:aa:4: matrix T :::::::: bits 2.7 ****** 2.4 ****** 2.1 ****** 1.9 ****** Relative 1.6 ****** * Entropy 1.3 ****** * (18.3 bits) 1.1 ****** * 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGGCAA consensus G sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:30814743-30814863 51 8.14e-07 CACGCCCTCT GGCGGCGA CAGATGGCGG chr3L:20498335-20498455 72 8.14e-07 TGCGCCACCT GGCGGCGA GCCGGTGATC chr3R:21252612-21252732 72 1.63e-06 TGTTGGTGTT GGCGGCCA AGGGTCGCTG chrX:18239453-18239573 20 3.41e-06 CATACTTTAG GGCGGCAA GTGCTGGCTG chrX:17870740-17870860 48 3.41e-06 TTCGCCACCT GGCGGCAA GTAGAGTGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:30814743-30814863 8.1e-07 50_[+4]_62 chr3L:20498335-20498455 8.1e-07 71_[+4]_41 chr3R:21252612-21252732 1.6e-06 71_[+4]_41 chrX:18239453-18239573 3.4e-06 19_[+4]_93 chrX:17870740-17870860 3.4e-06 47_[+4]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGCRA width=8 seqs=5 chr3R:30814743-30814863 ( 51) GGCGGCGA 1 chr3L:20498335-20498455 ( 72) GGCGGCGA 1 chr3R:21252612-21252732 ( 72) GGCGGCCA 1 chrX:18239453-18239573 ( 20) GGCGGCAA 1 chrX:17870740-17870860 ( 48) GGCGGCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.4073 E= 1.4e+003 -897 -897 267 -897 -897 -897 267 -897 -897 266 -897 -897 -897 -897 267 -897 -897 -897 267 -897 -897 266 -897 -897 22 34 135 -897 154 -897 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.4e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.400000 0.200000 0.400000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCRA MEME-4 regular expression -------------------------------------------------------------------------------- GGCGGC[AGC]A -------------------------------------------------------------------------------- Time 25.81 secs. ******************************************************************************** ******************************************************************************** MOTIF CMYCGCMC MEME-5 width = 8 sites = 7 llr = 82 E-value = 3.4e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CMYCGCMC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :4::::4: pos.-specific C a66a:a6a probability G ::::a::: matrix T ::4::::: bits 2.7 * *** * 2.4 * *** * 2.1 * *** * 1.9 * *** * Relative 1.6 * *** * Entropy 1.3 * *** * (16.9 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCCGCCC consensus AT A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMYCGCMC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20091296-20091416 81 3.86e-07 ATAAGTTAAT CCCCGCCC TTAGCGCGTC chrX:1660409-1660529 91 2.89e-06 CAGCCGCCGC CCCCGCAC TTCCAGCATA chr3L:20498335-20498455 20 2.89e-06 GCCACGCCCC CACCGCCC ACGGTCACGA chr2R:11131609-11131729 104 2.89e-06 GTAGAAGAAA CCTCGCCC GCAGGCGCC chr2R:23601862-23601982 97 8.33e-06 GTAAAATTAC CATCGCCC TTGCCAGTAC chrX:10206217-10206337 5 8.33e-06 TTTC CACCGCAC ACCGGTGCAT chr2L:4418156-4418276 107 8.33e-06 TCGCTGCTCC CCTCGCAC ACTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMYCGCMC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20091296-20091416 3.9e-07 80_[+5]_32 chrX:1660409-1660529 2.9e-06 90_[+5]_22 chr3L:20498335-20498455 2.9e-06 19_[+5]_93 chr2R:11131609-11131729 2.9e-06 103_[+5]_9 chr2R:23601862-23601982 8.3e-06 96_[+5]_16 chrX:10206217-10206337 8.3e-06 4_[+5]_108 chr2L:4418156-4418276 8.3e-06 106_[+5]_6 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMYCGCMC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CMYCGCMC width=8 seqs=7 chr2R:20091296-20091416 ( 81) CCCCGCCC 1 chrX:1660409-1660529 ( 91) CCCCGCAC 1 chr3L:20498335-20498455 ( 20) CACCGCCC 1 chr2R:11131609-11131729 ( 104) CCTCGCCC 1 chr2R:23601862-23601982 ( 97) CATCGCCC 1 chrX:10206217-10206337 ( 5) CACCGCAC 1 chr2L:4418156-4418276 ( 107) CCTCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMYCGCMC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.8221 E= 3.4e+003 -945 266 -945 -945 32 186 -945 -945 -945 186 -945 32 -945 266 -945 -945 -945 -945 267 -945 -945 266 -945 -945 32 186 -945 -945 -945 266 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMYCGCMC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.4e+003 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 0.571429 0.000000 0.428571 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.571429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CMYCGCMC MEME-5 regular expression -------------------------------------------------------------------------------- C[CA][CT]CGC[CA]C -------------------------------------------------------------------------------- Time 31.89 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14547033-14547153 2.86e-03 15_[+1(8.39e-06)]_97 chrX:16846731-16846851 4.66e-04 56_[+2(1.78e-06)]_56 chr3R:13077382-13077502 5.73e-06 23_[+3(1.95e-05)]_16_[+3(1.95e-05)]_\ 16_[+1(1.81e-06)]_41 chr3R:9695140-9695260 7.40e-06 76_[+2(1.78e-06)]_36 chr3L:6689081-6689201 1.73e-04 79_[+2(1.78e-06)]_33 chrX:16244844-16244964 1.92e-06 52_[+1(8.39e-06)]_45_[+1(1.81e-06)]_\ 7 chr3L:16884239-16884359 2.15e-02 120 chr2L:4418156-4418276 1.08e-09 22_[+1(1.81e-06)]_31_[+3(4.41e-06)]_\ 23_[+3(7.78e-05)]_6_[+5(8.33e-06)]_6 chr2L:4196387-4196507 3.79e-06 52_[+1(8.39e-06)]_33_[+3(3.65e-06)]_\ 19 chrX:17695777-17695897 4.08e-01 120 chrX:10206217-10206337 2.24e-07 4_[+5(8.33e-06)]_49_[+1(1.81e-06)]_\ [+4(3.79e-05)]_43 chr3R:25112704-25112824 1.16e-03 52_[+1(1.81e-06)]_60 chr2R:19632938-19633058 4.94e-05 62_[+1(1.81e-06)]_50 chr2R:11131609-11131729 4.28e-09 27_[+5(2.62e-05)]_9_[+2(6.46e-06)]_\ 51_[+5(2.89e-06)]_[+3(8.20e-07)]_1 chrX:17697772-17697892 1.84e-03 36_[+1(1.76e-05)]_76 chr2R:12521326-12521446 2.69e-04 78_[+1(1.81e-06)]_34 chr2R:23960920-23961040 1.05e-02 55_[+2(1.78e-06)]_57 chrX:20632186-20632306 1.00e+00 120 chr2L:5329221-5329341 7.51e-03 33_[+4(6.43e-05)]_79 chrX:20239202-20239322 1.71e-02 62_[+2(1.33e-05)]_50 chrX:12568723-12568843 5.41e-04 99_[+3(2.84e-06)]_13 chr3R:15468147-15468267 3.16e-05 59_[+1(1.31e-05)]_1_[+3(3.16e-05)]_\ 44 chr2R:15851497-15851617 2.42e-07 7_[+5(4.21e-05)]_39_[+1(8.39e-06)]_\ 14_[+3(3.65e-06)]_36 chr2R:19148098-19148218 5.92e-04 44_[+2(9.05e-06)]_68 chrX:15385802-15385922 3.36e-05 43_[+3(8.20e-07)]_34_[+2(6.80e-05)]_\ 27 chr2R:21700082-21700202 1.01e-06 27_[+3(9.18e-05)]_24_[+3(9.18e-05)]_\ 8_[+3(4.03e-06)]_37 chr3R:21252612-21252732 2.10e-08 46_[+1(6.13e-05)]_[+2(6.46e-06)]_9_\ [+4(1.63e-06)]_27_[+3(1.95e-05)]_6 chrX:3481057-3481177 1.72e-04 43_[+1(1.81e-06)]_69 chr2R:21312931-21313051 1.83e-04 73_[+1(6.88e-05)]_3_[+4(6.43e-05)]_\ 28 chrX:13587022-13587142 6.85e-06 49_[+2(2.60e-06)]_15_[+2(6.46e-06)]_\ 40 chrX:3674982-3675102 3.32e-07 57_[+2(1.78e-06)]_55 chr2R:23601862-23601982 6.63e-07 58_[+2(2.60e-06)]_30_[+5(8.33e-06)]_\ 16 chrX:13204865-13204985 8.90e-05 53_[+1(9.65e-05)]_59 chr3R:14577385-14577505 1.37e-03 85_[+1(1.81e-06)]_27 chrX:1968255-1968375 8.75e-01 120 chrX:19325837-19325957 4.19e-07 54_[+2(1.78e-06)]_24_[+1(1.81e-06)]_\ 26 chr3R:14098646-14098766 3.52e-06 60_[+1(1.81e-06)]_29_[+3(1.07e-05)]_\ 15 chr3R:15146554-15146674 7.53e-02 120 chr2L:13763273-13763393 7.40e-04 68_[+1(5.11e-05)]_44 chr3L:20498335-20498455 9.45e-10 10_[+5(1.59e-05)]_1_[+5(2.89e-06)]_\ 36_[+1(1.81e-06)]_[+4(8.14e-07)]_41 chr2R:22161795-22161915 4.49e-03 51_[+1(8.39e-06)]_61 chr3R:11208915-11209035 1.58e-02 120 chrX:1523409-1523529 1.56e-03 41_[+1(8.39e-06)]_71 chr2L:10108893-10109013 6.58e-08 8_[+3(1.07e-05)]_43_[+2(1.77e-05)]_\ 53 chrX:17870740-17870860 2.76e-05 39_[+1(1.81e-06)]_[+4(3.41e-06)]_65 chrX:6253806-6253926 1.19e-05 63_[+2(2.60e-06)]_49 chrX:7801219-7801339 9.10e-01 120 chrX:16820791-16820911 9.79e-03 56_[+1(1.81e-06)]_56 chr3L:15174993-15175113 9.99e-01 120 chr3L:13845394-13845514 2.03e-02 29_[+1(1.76e-05)]_83 chr2R:15818591-15818711 2.00e-05 103_[+1(1.81e-06)]_9 chr3L:12444172-12444292 9.49e-01 120 chr2R:11039138-11039258 7.81e-03 120 chrX:1300059-1300179 2.25e-04 61_[+1(1.81e-06)]_51 chr2L:11494066-11494186 2.98e-06 56_[+1(2.65e-06)]_1_[+2(2.60e-06)]_\ 47 chr2L:683229-683349 1.68e-01 120 chr2R:18937909-18938029 1.12e-04 67_[+1(1.81e-06)]_45 chr2R:11553515-11553635 9.91e-01 120 chr2R:16673041-16673161 1.18e-01 120 chrX:23067670-23067790 3.96e-06 56_[+2(2.60e-06)]_56 chr3R:18381388-18381508 2.49e-04 61_[+1(1.31e-05)]_51 chrX:17716953-17717073 9.51e-01 120 chr2R:21134011-21134131 9.92e-01 120 chrX:5358931-5359051 5.93e-02 120 chr2R:23004983-23005103 9.80e-01 120 chr3L:20700733-20700853 9.92e-01 120 chrX:1772703-1772823 4.27e-04 64_[+2(1.78e-06)]_48 chrX:14846503-14846623 1.00e+00 120 chr3L:12717660-12717780 9.74e-01 120 chr2R:19794358-19794478 9.74e-01 120 chr3R:29087610-29087730 2.96e-05 34_[+2(2.60e-06)]_78 chr4:835956-836076 3.00e-04 89_[+2(2.80e-05)]_23 chrX:17091178-17091298 2.14e-05 45_[+1(1.81e-06)]_67 chr3L:6159980-6160100 1.00e+00 120 chr2R:12020649-12020769 9.86e-01 120 chr2L:9586095-9586215 1.00e+00 120 chr3R:29716108-29716228 4.81e-05 58_[+1(8.39e-06)]_8_[+3(1.95e-05)]_\ 38 chrX:9020229-9020349 8.68e-03 120 chr2L:17963829-17963949 2.34e-03 96_[+1(8.39e-06)]_16 chr3L:4400057-4400177 9.04e-01 120 chr3L:7522016-7522136 7.44e-01 120 chr3L:6834696-6834816 9.44e-01 120 chr3L:15775675-15775795 5.34e-01 120 chr3R:29799045-29799165 2.10e-04 16_[+3(1.95e-05)]_49_[+1(9.65e-05)]_\ 39 chrX:20721813-20721933 9.07e-01 120 chr3L:5989506-5989626 9.65e-01 120 chrX:7162631-7162751 2.10e-07 61_[+1(1.81e-06)]_4_[+3(5.92e-06)]_\ 21_[+2(2.41e-05)]_10 chr3R:13548222-13548342 9.94e-01 120 chr3L:16743991-16744111 9.26e-01 120 chrX:9615564-9615684 5.03e-01 120 chr3R:6674697-6674817 6.43e-02 120 chr3R:19370810-19370930 5.00e-01 120 chr2L:8787720-8787840 9.87e-01 120 chr2L:14160971-14161091 1.58e-04 67_[+2(1.78e-06)]_45 chr2L:3855655-3855775 9.98e-01 120 chr3L:6830192-6830312 9.51e-01 120 chrX:10330002-10330122 6.23e-02 109_[+1(5.11e-05)]_3 chr2R:21883193-21883313 1.00e+00 120 chr3L:15320366-15320486 9.15e-01 120 chrX:1660409-1660529 6.60e-07 53_[+1(1.31e-05)]_21_[+3(5.54e-06)]_\ [+5(2.89e-06)]_22 chr3L:13227010-13227130 2.12e-01 120 chr3L:11309906-11310026 1.00e+00 120 chr2R:20027190-20027310 7.94e-01 120 chr3R:27826322-27826442 6.65e-02 21_[+1(1.94e-05)]_91 chr3R:10203690-10203810 1.52e-04 65_[+3(3.16e-05)]_9_[+2(1.78e-06)]_\ 30 chr2L:20936586-20936706 9.80e-01 120 chr3L:4691903-4692023 9.97e-01 120 chr3R:23900215-23900335 3.07e-06 66_[+1(1.81e-06)]_26_[+2(1.33e-05)]_\ 12 chr2L:7302871-7302991 9.87e-01 120 chr3R:14748496-14748616 3.99e-01 120 chr3R:8920251-8920371 3.19e-01 120 chr3L:16747146-16747266 1.00e+00 120 chr3L:13411166-13411286 7.00e-02 120 chr3L:18404477-18404597 9.84e-01 120 chr3L:11351430-11351550 5.79e-05 34_[+3(2.61e-05)]_20_[+1(1.76e-05)]_\ 50 chr3L:21727194-21727314 9.22e-01 120 chrX:12090320-12090440 9.44e-01 120 chrX:7556384-7556504 8.72e-01 120 chr2L:19373964-19374084 7.74e-01 120 chr3R:10568678-10568798 9.35e-01 120 chrX:19765632-19765752 7.80e-01 120 chrX:17720453-17720573 1.67e-06 19_[+3(9.18e-05)]_5_[+2(2.60e-06)]_\ 80 chr2L:21020144-21020264 6.37e-01 120 chr3L:18290496-18290616 9.99e-01 120 chr2R:19924023-19924143 9.51e-01 120 chrX:18910954-18911074 5.79e-01 120 chrX:5646396-5646516 8.68e-01 120 chr2L:18895138-18895258 9.99e-01 120 chr2L:18906766-18906886 7.91e-01 120 chr2R:9200879-9200999 4.85e-01 120 chrX:17501691-17501811 9.88e-01 120 chr3L:10391110-10391230 9.72e-01 120 chrX:18207614-18207734 9.24e-01 120 chr3R:16801183-16801303 2.69e-01 120 chr3R:16510298-16510418 9.79e-01 120 chrX:9689233-9689353 9.96e-01 120 chr3R:30733240-30733360 9.13e-01 120 chr3R:10498703-10498823 5.92e-01 120 chr3L:14145768-14145888 7.41e-01 120 chr3R:25459305-25459425 1.76e-01 120 chr3L:14146519-14146639 8.66e-01 120 chr3L:14961185-14961305 1.00e+00 120 chr3L:1083423-1083543 1.39e-01 2_[+1(5.11e-05)]_110 chr3L:6797606-6797726 9.99e-01 120 chr3L:15353899-15354019 9.87e-01 120 chrX:17799240-17799360 9.49e-01 120 chr3R:26801550-26801670 9.89e-01 120 chr3R:10370616-10370736 4.54e-01 120 chr3L:716210-716330 9.61e-01 120 chrX:18239453-18239573 3.84e-06 19_[+4(3.41e-06)]_59_[+2(2.60e-06)]_\ 26 chrX:9295688-9295808 9.19e-01 120 chr3L:18225047-18225167 1.00e+00 120 chr3L:18227481-18227601 9.87e-01 120 chr3R:13448515-13448635 7.65e-01 120 chr2L:13893623-13893743 9.98e-01 120 chr3R:30022665-30022785 3.55e-06 52_[+1(1.81e-06)]_25_[+3(2.15e-05)]_\ 27 chrX:4574099-4574219 1.84e-01 120 chr3L:7953046-7953166 7.13e-02 120 chr2L:3439641-3439761 2.37e-01 120 chr3L:18102202-18102322 9.20e-01 120 chr3L:19674449-19674569 9.74e-01 120 chrX:15364597-15364717 8.37e-01 120 chr3L:21585500-21585620 9.99e-01 120 chr2R:22135058-22135178 1.00e+00 120 chr3R:22886885-22887005 7.87e-01 120 chr2L:14690938-14691058 9.96e-01 120 chr3R:10449108-10449228 8.88e-01 120 chr3L:380952-381072 8.54e-01 120 chr2L:20204754-20204874 7.41e-01 120 chrX:8671764-8671884 4.93e-01 120 chr3R:14386239-14386359 4.26e-01 120 chr3L:15670580-15670700 2.43e-01 120 chr2L:3570034-3570154 3.91e-01 120 chrX:7166438-7166558 1.00e+00 120 chr3L:12063563-12063683 1.00e+00 120 chrX:8259989-8260109 9.43e-01 120 chr3R:29541510-29541630 8.68e-01 120 chr2L:3851463-3851583 1.00e+00 120 chr3L:5017661-5017781 9.52e-01 120 chr2L:5303020-5303140 7.70e-01 120 chr3R:21535466-21535586 9.14e-01 120 chrX:17471742-17471862 8.11e-01 120 chr3R:22719687-22719807 3.18e-01 120 chr3L:3435103-3435223 8.29e-01 120 chr2R:16091915-16092035 6.68e-01 120 chr3L:15330228-15330348 7.41e-01 120 chr2L:1738188-1738308 9.92e-01 120 chr3R:6816662-6816782 5.79e-02 120 chr2L:8552578-8552698 5.74e-01 120 chr3R:15146761-15146881 3.85e-04 25_[+3(2.69e-05)]_87 chr2L:7616968-7617088 9.57e-01 120 chr3R:29696516-29696636 8.15e-01 120 chr2L:14212827-14212947 4.42e-02 120 chr3R:30734720-30734840 9.47e-01 120 chr3L:17404820-17404940 9.62e-01 120 chrX:18208632-18208752 1.00e+00 120 chrX:4581883-4582003 9.86e-01 120 chrX:3073723-3073843 2.27e-01 120 chr2R:22379252-22379372 1.93e-02 31_[+1(5.11e-05)]_81 chr2L:11341090-11341210 1.00e+00 120 chr3L:10514962-10515082 1.00e+00 120 chr3R:10354054-10354174 9.61e-01 120 chr3R:14598098-14598218 9.97e-01 120 chr3R:10651106-10651226 8.32e-01 120 chr3R:26990265-26990385 1.42e-06 59_[+2(1.78e-06)]_53 chr3L:6807648-6807768 4.74e-01 120 chr2L:4286261-4286381 6.42e-01 120 chr2R:21313132-21313252 4.40e-03 53_[+1(2.76e-05)]_59 chrX:12923415-12923535 4.85e-02 120 chr3R:19108253-19108373 1.00e+00 120 chr3L:3978105-3978225 6.43e-01 120 chr2R:23003235-23003355 7.66e-01 120 chr2R:20126708-20126828 7.15e-01 120 chrX:21362962-21363082 2.51e-03 46_[+2(1.78e-06)]_66 chr4:406947-407067 3.28e-03 87_[+2(9.05e-06)]_25 chrX:21045763-21045883 9.72e-01 120 chr2R:14803456-14803576 9.71e-01 120 chr2L:9907533-9907653 6.23e-03 6_[+2(6.80e-05)]_12_[+2(8.60e-05)]_\ 17_[+2(1.51e-05)]_61 chr3L:16015934-16016054 1.00e+00 120 chrX:12249011-12249131 9.64e-01 120 chr3L:7634884-7635004 4.38e-01 120 chr3L:6885777-6885897 1.00e+00 120 chr3R:21830332-21830452 5.80e-01 120 chr3L:15199354-15199474 9.93e-01 120 chr2L:11326522-11326642 4.05e-01 45_[+1(5.11e-05)]_67 chr2L:15432386-15432506 9.71e-01 120 chr2R:23739450-23739570 9.71e-01 120 chr3L:18243268-18243388 1.97e-01 120 chr2L:5445952-5446072 1.00e+00 120 chr3L:10756211-10756331 8.47e-01 120 chrX:18946963-18947083 8.68e-01 120 chrX:3096462-3096582 7.91e-01 120 chr3R:10636173-10636293 9.45e-01 120 chr3L:19179562-19179682 9.93e-01 120 chr2R:14915196-14915316 9.93e-01 120 chr3R:30865583-30865703 9.94e-01 120 chr3R:9159905-9160025 9.89e-01 120 chr2R:15919844-15919964 1.05e-01 28_[+1(9.65e-05)]_84 chr3R:10626152-10626272 7.29e-01 120 chr3L:18225246-18225366 9.98e-01 120 chr3R:24580491-24580611 2.81e-01 120 chr3R:13885144-13885264 9.70e-01 120 chr2L:7295116-7295236 9.82e-01 120 chr3R:30814743-30814863 5.86e-09 42_[+1(1.76e-05)]_[+4(8.14e-07)]_2_\ [+2(1.69e-05)]_52 chr2R:20091296-20091416 1.36e-03 80_[+5(3.86e-07)]_32 chrX:457949-458069 5.84e-01 120 chr3L:15672941-15673061 3.00e-01 120 chr2L:3841094-3841214 9.72e-01 120 chr3L:1167035-1167155 9.99e-01 120 chr3R:6229181-6229301 3.48e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n09.farnam.hpc.yale.internal ********************************************************************************