******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10669.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:8491178-8491298 1.0000 120 chrX:8420855-8420975 1.0000 120 chrX:14142086-14142206 1.0000 120 chr2R:6242236-6242356 1.0000 120 chrX:14653694-14653814 1.0000 120 chr2R:24197679-24197799 1.0000 120 chr2L:8529783-8529903 1.0000 120 chr2L:16390910-16391030 1.0000 120 chr2R:13506994-13507114 1.0000 120 chr3L:3893430-3893550 1.0000 120 chr2R:16156998-16157118 1.0000 120 chr3L:22401640-22401760 1.0000 120 chr2R:18746912-18747032 1.0000 120 chr2R:23843152-23843272 1.0000 120 chr3R:29279710-29279830 1.0000 120 chr3R:22698639-22698759 1.0000 120 chr3R:30259708-30259828 1.0000 120 chr2L:3124489-3124609 1.0000 120 chr2R:15046999-15047119 1.0000 120 chr2R:23262877-23262997 1.0000 120 chr2R:19964384-19964504 1.0000 120 chr3L:6391496-6391616 1.0000 120 chr3R:29140211-29140331 1.0000 120 chr3R:11694486-11694606 1.0000 120 chr3L:12706581-12706701 1.0000 120 chr3R:15853689-15853809 1.0000 120 chr3L:22266693-22266813 1.0000 120 chr2R:11833232-11833352 1.0000 120 chr2R:8749909-8750029 1.0000 120 chr2R:19191835-19191955 1.0000 120 chrX:7222270-7222390 1.0000 120 chr3L:1693008-1693128 1.0000 120 chr3L:17603632-17603752 1.0000 120 chr3L:7595345-7595465 1.0000 120 chr3R:15631043-15631163 1.0000 120 chr3R:26004491-26004611 1.0000 120 chr2R:8995133-8995253 1.0000 120 chr2R:15000551-15000671 1.0000 120 chr3L:10545106-10545226 1.0000 120 chr3R:20773341-20773461 1.0000 120 chr3R:13215261-13215381 1.0000 120 chr2L:10404118-10404238 1.0000 120 chr2R:17499287-17499407 1.0000 120 chrX:14017515-14017635 1.0000 120 chr3L:8860101-8860221 1.0000 120 chr2L:5288394-5288514 1.0000 120 chr2L:10759758-10759878 1.0000 120 chr2R:15063829-15063949 1.0000 120 chr2R:15825529-15825649 1.0000 120 chrX:10580889-10581009 1.0000 120 chr2L:19574543-19574663 1.0000 120 chr3R:29638517-29638637 1.0000 120 chr3L:10757109-10757229 1.0000 120 chr3R:27199406-27199526 1.0000 120 chr2R:11048103-11048223 1.0000 120 chr3L:11382761-11382881 1.0000 120 chr3L:12030666-12030786 1.0000 120 chr3L:15641678-15641798 1.0000 120 chr3R:24024263-24024383 1.0000 120 chr2R:21225019-21225139 1.0000 120 chr2L:452216-452336 1.0000 120 chrX:7537932-7538052 1.0000 120 chrX:19173078-19173198 1.0000 120 chrX:22631803-22631923 1.0000 120 chr2R:21799435-21799555 1.0000 120 chrX:17493771-17493891 1.0000 120 chrX:5301021-5301141 1.0000 120 chr3L:4383225-4383345 1.0000 120 chr2R:11749588-11749708 1.0000 120 chrX:379686-379806 1.0000 120 chr3L:17590190-17590310 1.0000 120 chr3R:10829913-10830033 1.0000 120 chr3R:27222114-27222234 1.0000 120 chr3L:19869886-19870006 1.0000 120 chr2R:9956157-9956277 1.0000 120 chr2L:4417018-4417138 1.0000 120 chrX:9401210-9401330 1.0000 120 chr2R:21883182-21883302 1.0000 120 chr2L:3562522-3562642 1.0000 120 chr2L:16590879-16590999 1.0000 120 chrX:9399957-9400077 1.0000 120 chr2L:723913-724033 1.0000 120 chrX:6003962-6004082 1.0000 120 chr3L:6371543-6371663 1.0000 120 chr3L:15220475-15220595 1.0000 120 chr3L:2866984-2867104 1.0000 120 chr2R:11755358-11755478 1.0000 120 chrX:13948267-13948387 1.0000 120 chrX:21127393-21127513 1.0000 120 chrX:2336658-2336778 1.0000 120 chr3L:20582507-20582627 1.0000 120 chr3L:15013414-15013534 1.0000 120 chr2L:20989607-20989727 1.0000 120 chr3L:2533169-2533289 1.0000 120 chr2L:3351957-3352077 1.0000 120 chr3R:8922964-8923084 1.0000 120 chr2L:8919823-8919943 1.0000 120 chrX:14098404-14098524 1.0000 120 chr3L:12058591-12058711 1.0000 120 chr3R:29290961-29291081 1.0000 120 chr3L:21720977-21721097 1.0000 120 chr2L:5372680-5372800 1.0000 120 chr3L:3304224-3304344 1.0000 120 chr3R:15596044-15596164 1.0000 120 chr3L:20404183-20404303 1.0000 120 chr3L:21253109-21253229 1.0000 120 chr3L:18078728-18078848 1.0000 120 chr2L:3582854-3582974 1.0000 120 chr3R:7025381-7025501 1.0000 120 chr3R:29300185-29300305 1.0000 120 chr2R:14076253-14076373 1.0000 120 chr3L:20635727-20635847 1.0000 120 chr3L:7632940-7633060 1.0000 120 chr2R:22798577-22798697 1.0000 120 chr3L:10387676-10387796 1.0000 120 chr3R:21935295-21935415 1.0000 120 chr3L:8013453-8013573 1.0000 120 chr2R:8595940-8596060 1.0000 120 chr3L:10928853-10928973 1.0000 120 chrX:5020147-5020267 1.0000 120 chrX:14134093-14134213 1.0000 120 chrX:9656421-9656541 1.0000 120 chr3L:16259636-16259756 1.0000 120 chr2L:15390602-15390722 1.0000 120 chr2R:11544149-11544269 1.0000 120 chr3L:2117144-2117264 1.0000 120 chr3L:5637642-5637762 1.0000 120 chr3R:31963238-31963358 1.0000 120 chr3L:3442200-3442320 1.0000 120 chr2L:4071665-4071785 1.0000 120 chr3R:8958435-8958555 1.0000 120 chr3L:15005196-15005316 1.0000 120 chr3L:3106284-3106404 1.0000 120 chr3L:17577056-17577176 1.0000 120 chr3R:21829840-21829960 1.0000 120 chrX:3436337-3436457 1.0000 120 chr2R:9071840-9071960 1.0000 120 chr3R:10455029-10455149 1.0000 120 chr2R:17831983-17832103 1.0000 120 chr3R:5331897-5332017 1.0000 120 chr3L:13107402-13107522 1.0000 120 chr3R:4884012-4884132 1.0000 120 chr2L:15909432-15909552 1.0000 120 chr3L:3338999-3339119 1.0000 120 chr2L:2432965-2433085 1.0000 120 chrX:3867160-3867280 1.0000 120 chr2L:11386513-11386633 1.0000 120 chr2L:15386902-15387022 1.0000 120 chr3R:30843887-30844007 1.0000 120 chrX:7535024-7535144 1.0000 120 chr3R:13916697-13916817 1.0000 120 chr2L:15459091-15459211 1.0000 120 chr2R:18215435-18215555 1.0000 120 chrX:10601751-10601871 1.0000 120 chr2L:19156618-19156738 1.0000 120 chr3R:9346658-9346778 1.0000 120 chr2L:5290015-5290135 1.0000 120 chr2R:13461285-13461405 1.0000 120 chr2L:7899313-7899433 1.0000 120 chr3R:14389398-14389518 1.0000 120 chrX:4442655-4442775 1.0000 120 chr3R:9966243-9966363 1.0000 120 chr2R:20065644-20065764 1.0000 120 chrX:8215637-8215757 1.0000 120 chrX:6528627-6528747 1.0000 120 chr3R:30014038-30014158 1.0000 120 chr3R:22140191-22140311 1.0000 120 chr3L:20952200-20952320 1.0000 120 chr2L:18523145-18523265 1.0000 120 chr3L:20632493-20632613 1.0000 120 chr2R:10656080-10656200 1.0000 120 chr3L:7262692-7262812 1.0000 120 chr2L:13146362-13146482 1.0000 120 chr2R:8143511-8143631 1.0000 120 chr3R:29091712-29091832 1.0000 120 chr2R:11033712-11033832 1.0000 120 chr3L:20990371-20990491 1.0000 120 chr3L:20592699-20592819 1.0000 120 chrX:9468421-9468541 1.0000 120 chr2L:20916939-20917059 1.0000 120 chr3R:14421925-14422045 1.0000 120 chrX:6027973-6028093 1.0000 120 chr2R:9138250-9138370 1.0000 120 chr3R:7651136-7651256 1.0000 120 chr3L:6458839-6458959 1.0000 120 chr3L:16174894-16175014 1.0000 120 chr3L:6364379-6364499 1.0000 120 chr2R:21851708-21851828 1.0000 120 chrX:17726709-17726829 1.0000 120 chr2R:9498850-9498970 1.0000 120 chr2R:20580848-20580968 1.0000 120 chr3L:2800415-2800535 1.0000 120 chr2L:8855670-8855790 1.0000 120 chr2L:21006732-21006852 1.0000 120 chrX:8212225-8212345 1.0000 120 chr3R:24970833-24970953 1.0000 120 chr3L:9848870-9848990 1.0000 120 chr3R:10533294-10533414 1.0000 120 chr2R:19617334-19617454 1.0000 120 chr2L:646671-646791 1.0000 120 chr2L:16591491-16591611 1.0000 120 chr2R:15100682-15100802 1.0000 120 chr3R:14007674-14007794 1.0000 120 chr3R:30843201-30843321 1.0000 120 chr3R:19255421-19255541 1.0000 120 chr3L:18243264-18243384 1.0000 120 chrX:10581641-10581761 1.0000 120 chr3R:15556581-15556701 1.0000 120 chr3R:18787366-18787486 1.0000 120 chr2R:18926563-18926683 1.0000 120 chrX:4435083-4435203 1.0000 120 chrX:12507702-12507822 1.0000 120 chr2R:23637977-23638097 1.0000 120 chr2R:9714233-9714353 1.0000 120 chr3R:30461649-30461769 1.0000 120 chr2R:18907130-18907250 1.0000 120 chr3L:2879889-2880009 1.0000 120 chr3R:24549884-24550004 1.0000 120 chr3R:8038004-8038124 1.0000 120 chr2R:16836443-16836563 1.0000 120 chrX:17542879-17542999 1.0000 120 chr3L:332296-332416 1.0000 120 chr2L:20381476-20381596 1.0000 120 chr3R:7646289-7646409 1.0000 120 chrX:1826227-1826347 1.0000 120 chr2R:10058009-10058129 1.0000 120 chr3L:1859659-1859779 1.0000 120 chr3L:10352229-10352349 1.0000 120 chrX:342614-342734 1.0000 120 chr2R:17439586-17439706 1.0000 120 chr2L:19454454-19454574 1.0000 120 chr2L:11069656-11069776 1.0000 120 chrX:7177274-7177394 1.0000 120 chr2L:609605-609725 1.0000 120 chr2L:11052520-11052640 1.0000 120 chr3L:2549085-2549205 1.0000 120 chr3L:8360407-8360527 1.0000 120 chr3L:3444375-3444495 1.0000 120 chr3L:10928055-10928175 1.0000 120 chr2R:20065850-20065970 1.0000 120 chr2L:13665456-13665576 1.0000 120 chr2L:7323102-7323222 1.0000 120 chr3R:27069926-27070046 1.0000 120 chr3L:10365081-10365201 1.0000 120 chr3L:16286393-16286513 1.0000 120 chr3L:6458027-6458147 1.0000 120 chr3L:18038378-18038498 1.0000 120 chr2R:8240830-8240950 1.0000 120 chr3L:1810355-1810475 1.0000 120 chr2L:21847448-21847568 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG10669/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10669.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.336 C 0.16 G 0.166 T 0.338 Background letter frequencies (from file dataset with add-one prior applied): A 0.336 C 0.16 G 0.166 T 0.338 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCACTGNG MEME-1 width = 8 sites = 24 llr = 224 E-value = 3.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTGNG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::8:2:3: pos.-specific C 1a:a2:3: probability G 9:2::93a matrix T ::::612: bits 2.6 * * 2.4 * * * 2.1 ** * * 1.8 ** * * * Relative 1.6 ** * * * Entropy 1.3 ** * * * (13.5 bits) 1.1 **** * * 0.8 **** * * 0.5 ****** * 0.3 ******** 0.0 -------- Multilevel GCACTGGG consensus A A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGNG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:8038004-8038124 18 2.21e-06 CAACAAATGT GCACTGGG AGAAAAATAA chrX:10580889-10581009 9 2.21e-06 ATATGGCT GCACTGGG AAAACTGAGT chr2R:11833232-11833352 86 2.21e-06 GGCATTGAGT GCACTGGG AAAAAATAGT chr3R:21935295-21935415 1 4.34e-06 . GCACTGCG AGAAAATAAA chrX:19173078-19173198 12 4.34e-06 TTAGGTAGAT GCACTGCG ACAAAAGTCG chr2R:16836443-16836563 14 1.19e-05 CTTTAGCAAT GCACTGAG AGAAAAAAGG chr3L:10545106-10545226 12 1.19e-05 AGACAGCACA GCACTGAG AAAAAATGTT chrX:17542879-17542999 17 1.52e-05 ATCTCAAAAT GCACAGGG CAAAAAAAAA chr2L:7899313-7899433 105 1.52e-05 TGCTGTTGTT GCACAGGG GTGTGGCA chr2R:13506994-13507114 92 1.52e-05 ACATCCCATG GCGCTGCG TTGCCAGACA chr2R:21883182-21883302 9 2.18e-05 CTTCAAAT GCACTGTG AATAAATATA chr3R:30843201-30843321 14 2.44e-05 TGAGCATCCG GCACCGAG ACTTAGAATA chr3R:29290961-29291081 22 2.44e-05 AAGGGGAAAT GCACCGAG AACAAATTGC chr2R:23843152-23843272 86 2.71e-05 ATTCCGGAAT GCGCTGAG TTGGCGCTAT chr3R:30014038-30014158 91 4.57e-05 CTCATCTATA GCGCCGAG TATACTCGTA chrX:13948267-13948387 63 4.57e-05 TTACTAATAC GCACAGTG TGACCGTTGA chrX:5301021-5301141 45 4.57e-05 CAGAGGCTGC GCACAGTG TTGCGAAATG chr3R:27199406-27199526 42 4.57e-05 AAATAAATCA CCACTGGG TCATAATAGC chrX:8491178-8491298 78 4.57e-05 CTTTGAAATA GCACAGTG AGTTTCTGAA chrX:22631803-22631923 20 5.22e-05 TAGTCAATTT GCACTTGG CACTTGTCTA chr3L:3893430-3893550 111 5.22e-05 AGTTAATCTC CCACTGCG CC chr3L:7262692-7262812 24 5.76e-05 AAAAGTTTAA GCACTTCG TTTTAATTTG chr2R:11755358-11755478 87 7.80e-05 TCTTGCCTTG GCACCTCG AATTTTCTCT chr3L:22401640-22401760 108 1.26e-04 GCTCTTTGGA GCGGTGGG CGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGNG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:8038004-8038124 2.2e-06 17_[+1]_95 chrX:10580889-10581009 2.2e-06 8_[+1]_104 chr2R:11833232-11833352 2.2e-06 85_[+1]_27 chr3R:21935295-21935415 4.3e-06 [+1]_112 chrX:19173078-19173198 4.3e-06 11_[+1]_101 chr2R:16836443-16836563 1.2e-05 13_[+1]_99 chr3L:10545106-10545226 1.2e-05 11_[+1]_101 chrX:17542879-17542999 1.5e-05 16_[+1]_96 chr2L:7899313-7899433 1.5e-05 104_[+1]_8 chr2R:13506994-13507114 1.5e-05 91_[+1]_21 chr2R:21883182-21883302 2.2e-05 8_[+1]_104 chr3R:30843201-30843321 2.4e-05 13_[+1]_99 chr3R:29290961-29291081 2.4e-05 21_[+1]_91 chr2R:23843152-23843272 2.7e-05 85_[+1]_27 chr3R:30014038-30014158 4.6e-05 90_[+1]_22 chrX:13948267-13948387 4.6e-05 62_[+1]_50 chrX:5301021-5301141 4.6e-05 44_[+1]_68 chr3R:27199406-27199526 4.6e-05 41_[+1]_71 chrX:8491178-8491298 4.6e-05 77_[+1]_35 chrX:22631803-22631923 5.2e-05 19_[+1]_93 chr3L:3893430-3893550 5.2e-05 110_[+1]_2 chr3L:7262692-7262812 5.8e-05 23_[+1]_89 chr2R:11755358-11755478 7.8e-05 86_[+1]_26 chr3L:22401640-22401760 0.00013 107_[+1]_5 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGNG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTGNG width=8 seqs=24 chr3R:8038004-8038124 ( 18) GCACTGGG 1 chrX:10580889-10581009 ( 9) GCACTGGG 1 chr2R:11833232-11833352 ( 86) GCACTGGG 1 chr3R:21935295-21935415 ( 1) GCACTGCG 1 chrX:19173078-19173198 ( 12) GCACTGCG 1 chr2R:16836443-16836563 ( 14) GCACTGAG 1 chr3L:10545106-10545226 ( 12) GCACTGAG 1 chrX:17542879-17542999 ( 17) GCACAGGG 1 chr2L:7899313-7899433 ( 105) GCACAGGG 1 chr2R:13506994-13507114 ( 92) GCGCTGCG 1 chr2R:21883182-21883302 ( 9) GCACTGTG 1 chr3R:30843201-30843321 ( 14) GCACCGAG 1 chr3R:29290961-29291081 ( 22) GCACCGAG 1 chr2R:23843152-23843272 ( 86) GCGCTGAG 1 chr3R:30014038-30014158 ( 91) GCGCCGAG 1 chrX:13948267-13948387 ( 63) GCACAGTG 1 chrX:5301021-5301141 ( 45) GCACAGTG 1 chr3R:27199406-27199526 ( 42) CCACTGGG 1 chrX:8491178-8491298 ( 78) GCACAGTG 1 chrX:22631803-22631923 ( 20) GCACTTGG 1 chr3L:3893430-3893550 ( 111) CCACTGCG 1 chr3L:7262692-7262812 ( 24) GCACTTCG 1 chr2R:11755358-11755478 ( 87) GCACCTCG 1 chr3L:22401640-22401760 ( 108) GCGGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGNG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3 E= 3.9e-001 -1123 -94 247 -1123 -1123 264 -1123 -1123 131 -1123 1 -1123 -1123 258 -199 -1123 -69 6 -1123 89 -1123 -1123 240 -143 -43 64 101 -102 -1123 -1123 259 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGNG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 3.9e-001 0.000000 0.083333 0.916667 0.000000 0.000000 1.000000 0.000000 0.000000 0.833333 0.000000 0.166667 0.000000 0.000000 0.958333 0.041667 0.000000 0.208333 0.166667 0.000000 0.625000 0.000000 0.000000 0.875000 0.125000 0.250000 0.250000 0.333333 0.166667 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTGNG MEME-1 regular expression -------------------------------------------------------------------------------- GCAC[TA]G[GAC]G -------------------------------------------------------------------------------- Time 7.50 secs. ******************************************************************************** ******************************************************************************** MOTIF DGCGGMGH MEME-2 width = 8 sites = 14 llr = 141 E-value = 7.6e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif DGCGGMGH MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3::::4:4 pos.-specific C 1:9::6:3 probability G 4a1aa:a: matrix T 2::::::4 bits 2.6 * ** * 2.4 **** * 2.1 **** * 1.8 **** * Relative 1.6 **** * Entropy 1.3 ****** (14.5 bits) 1.1 ****** 0.8 ****** 0.5 ****** 0.3 ******** 0.0 -------- Multilevel GGCGGCGA consensus A A T sequence T C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGCGGMGH MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17439586-17439706 62 5.16e-07 CTACAAAGGG GGCGGCGC GGGGAGGAGC chr2R:22798577-22798697 86 2.69e-06 CCATATTTAT GGCGGCGT CCACATATAA chrX:2336658-2336778 113 2.69e-06 GACTGCAGAA GGCGGCGA chrX:14653694-14653814 83 2.69e-06 CCGTTCGTTC GGCGGCGT TCGGTTCGTA chr2L:13665456-13665576 106 3.74e-06 CCAACACGTA AGCGGCGC GTTGTGC chr3R:8038004-8038124 1 5.87e-06 . TGCGGCGC AACAAATGTG chr2L:3124489-3124609 30 1.03e-05 CTTGCGATTT AGCggcga ttttggtgat chr2R:23262877-23262997 13 1.53e-05 TGTTCCAACT GGCGGAGA CTGAGTTGGG chr3R:22698639-22698759 60 2.19e-05 TTTCCACGAT CGCGGCGT TTACGTTGAT chr3L:22266693-22266813 21 2.41e-05 TGACCGATGA AGCGGAGC AGGGCGTTCC chr2L:19454454-19454574 33 3.60e-05 ATTGTGAACT AGCGGAGT TAAGTGCAGT chr2R:16156998-16157118 60 3.93e-05 CGCGATATCA GGGGGCGA TTTGTTTATC chr3L:3106284-3106404 21 4.86e-05 TTCCTAGCTG TGCGGAGA ACGTGTTAGC chr2R:19191835-19191955 103 4.86e-05 CAATTCTGCC TGCGGAGT GTAGTAACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGCGGMGH MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17439586-17439706 5.2e-07 61_[+2]_51 chr2R:22798577-22798697 2.7e-06 85_[+2]_27 chrX:2336658-2336778 2.7e-06 112_[+2] chrX:14653694-14653814 2.7e-06 82_[+2]_30 chr2L:13665456-13665576 3.7e-06 105_[+2]_7 chr3R:8038004-8038124 5.9e-06 [+2]_112 chr2L:3124489-3124609 1e-05 29_[+2]_83 chr2R:23262877-23262997 1.5e-05 12_[+2]_100 chr3R:22698639-22698759 2.2e-05 59_[+2]_53 chr3L:22266693-22266813 2.4e-05 20_[+2]_92 chr2L:19454454-19454574 3.6e-05 32_[+2]_80 chr2R:16156998-16157118 3.9e-05 59_[+2]_53 chr3L:3106284-3106404 4.9e-05 20_[+2]_92 chr2R:19191835-19191955 4.9e-05 102_[+2]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGCGGMGH MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DGCGGMGH width=8 seqs=14 chr2R:17439586-17439706 ( 62) GGCGGCGC 1 chr2R:22798577-22798697 ( 86) GGCGGCGT 1 chrX:2336658-2336778 ( 113) GGCGGCGA 1 chrX:14653694-14653814 ( 83) GGCGGCGT 1 chr2L:13665456-13665576 ( 106) AGCGGCGC 1 chr3R:8038004-8038124 ( 1) TGCGGCGC 1 chr2L:3124489-3124609 ( 30) AGCGGCGA 1 chr2R:23262877-23262997 ( 13) GGCGGAGA 1 chr3R:22698639-22698759 ( 60) CGCGGCGT 1 chr3L:22266693-22266813 ( 21) AGCGGAGC 1 chr2L:19454454-19454574 ( 33) AGCGGAGT 1 chr2R:16156998-16157118 ( 60) GGGGGCGA 1 chr3L:3106284-3106404 ( 21) TGCGGAGA 1 chr2R:19191835-19191955 ( 103) TGCGGAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGCGGMGH MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.2007 E= 7.6e+002 -23 -116 137 -66 -1045 -1045 259 -1045 -1045 253 -121 -1045 -1045 -1045 259 -1045 -1045 -1045 259 -1045 9 200 -1045 -1045 -1045 -1045 259 -1045 9 83 -1045 8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGCGGMGH MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 7.6e+002 0.285714 0.071429 0.428571 0.214286 0.000000 0.000000 1.000000 0.000000 0.000000 0.928571 0.071429 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.357143 0.642857 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.357143 0.285714 0.000000 0.357143 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGCGGMGH MEME-2 regular expression -------------------------------------------------------------------------------- [GAT]GCGG[CA]G[ATC] -------------------------------------------------------------------------------- Time 13.80 secs. ******************************************************************************** ******************************************************************************** MOTIF CCCGSYCC MEME-3 width = 8 sites = 3 llr = 39 E-value = 3.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCCGSYCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aaa:77aa probability G :::a3::: matrix T :::::3:: bits 2.6 **** ** 2.4 **** ** 2.1 **** ** 1.8 **** ** Relative 1.6 ***** ** Entropy 1.3 ******** (18.9 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCCGCCCC consensus GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSYCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:332296-332416 90 4.46e-07 CACAACCCGT CCCGCCCC TCCTCCTAGA chr2R:19191835-19191955 72 9.08e-07 TGCTTCCCCA CCCGGCCC AGCCCAGACC chr3L:3304224-3304344 29 1.85e-06 CACCGCTCTC CCCGCTCC CACTTGCGTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSYCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:332296-332416 4.5e-07 89_[+3]_23 chr2R:19191835-19191955 9.1e-07 71_[+3]_41 chr3L:3304224-3304344 1.8e-06 28_[+3]_84 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSYCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCCGSYCC width=8 seqs=3 chr3L:332296-332416 ( 90) CCCGCCCC 1 chr2R:19191835-19191955 ( 72) CCCGGCCC 1 chr3L:3304224-3304344 ( 29) CCCGCTCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSYCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 3.9e+003 -823 264 -823 -823 -823 264 -823 -823 -823 264 -823 -823 -823 -823 259 -823 -823 205 100 -823 -823 205 -823 -2 -823 264 -823 -823 -823 264 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSYCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.9e+003 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCCGSYCC MEME-3 regular expression -------------------------------------------------------------------------------- CCCG[CG][CT]CC -------------------------------------------------------------------------------- Time 19.94 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGGC MEME-4 width = 8 sites = 4 llr = 51 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGGC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :a:::::: pos.-specific C a::a:::a probability G ::a:3aa: matrix T ::::8::: bits 2.6 * ** *** 2.4 * ** *** 2.1 * ** *** 1.8 * ** *** Relative 1.6 **** *** Entropy 1.3 **** *** (18.3 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCTGGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGGC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17439586-17439706 3 2.13e-06 AA CAGCTGGC CATCATCGAA chr3L:332296-332416 50 2.13e-06 CGACCACAAG CAGCTGGC AAAAAGAGCG chr2L:11386513-11386633 68 2.13e-06 TAAATATTTG CAGCTGGC AGTAAGAGTA chr3L:20404183-20404303 39 3.17e-06 CTTGATTCGC CAGCGGGC GGCAGCTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGGC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17439586-17439706 2.1e-06 2_[+4]_110 chr3L:332296-332416 2.1e-06 49_[+4]_63 chr2L:11386513-11386633 2.1e-06 67_[+4]_45 chr3L:20404183-20404303 3.2e-06 38_[+4]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGGC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGGC width=8 seqs=4 chr2R:17439586-17439706 ( 3) CAGCTGGC 1 chr3L:332296-332416 ( 50) CAGCTGGC 1 chr2L:11386513-11386633 ( 68) CAGCTGGC 1 chr3L:20404183-20404303 ( 39) CAGCGGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGGC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 1.4e+004 -865 264 -865 -865 157 -865 -865 -865 -865 -865 259 -865 -865 264 -865 -865 -865 -865 59 115 -865 -865 259 -865 -865 -865 259 -865 -865 264 -865 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGGC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.4e+004 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGGC MEME-4 regular expression -------------------------------------------------------------------------------- CAGC[TG]GGC -------------------------------------------------------------------------------- Time 26.12 secs. ******************************************************************************** ******************************************************************************** MOTIF GGAATBCC MEME-5 width = 8 sites = 16 llr = 160 E-value = 2.2e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGAATBCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::6a:1:: pos.-specific C ::2::3aa probability G aa2::3:: matrix T ::::a4:: bits 2.6 ** ** 2.4 ** ** 2.1 ** ** 1.8 ** ** Relative 1.6 ** ** ** Entropy 1.3 ** ** ** (14.4 bits) 1.1 ** ** ** 0.8 ** ** ** 0.5 ***** ** 0.3 ******** 0.0 -------- Multilevel GGAATTCC consensus C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATBCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10533294-10533414 43 8.78e-06 GGTGCTTAAA GGAATCCC ATTGTAATGA chr2L:8919823-8919943 53 8.78e-06 AATAGGATCA GGAATGCC GTTCATAATG chrX:2336658-2336778 76 8.78e-06 TTCATAGGTA GGAATGCC ATCTGTTGTT chrX:17493771-17493891 51 8.78e-06 ATCAGAGTCT GGAATCCC GGGTCTGTAT chr3L:7595345-7595465 83 8.78e-06 AGGAACCAAA GGAATCCC GAGCTCGTTA chr3L:22401640-22401760 82 8.78e-06 GCCGAGTGCC GGAATGCC ACGGAAGTGC chrX:9656421-9656541 112 1.79e-05 TATATTTCAA GGAATTCC C chr3L:18078728-18078848 30 1.79e-05 GGCCGGATAA GGAATTCC GTTGGCTAGT chr2R:20065644-20065764 87 2.64e-05 TATTGAGATA GGGATGCC GACTGTGAAT chr3R:22698639-22698759 85 2.64e-05 GATGAGGAAC GGGATCCC CTGTCGGCCA chr3L:19869886-19870006 57 3.07e-05 TATATAATAG GGCATTCC CGATTTGGCG chr3L:12030666-12030786 95 3.07e-05 AAAAGTATAG GGCATTCC CTAGTCGAAT chr2R:19191835-19191955 47 3.07e-05 GTGTGCCATT GGCATTCC CAGTTTATGC chr3L:2549085-2549205 84 3.52e-05 ATAGGGCTTA GGGATTCC TTACTTTAAA chrX:4435083-4435203 74 4.43e-05 AAAAAAAAAG GGAATACC AACAACAACC chr3R:10455029-10455149 18 4.43e-05 AACGAAGATC GGAATACC CTAACACAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATBCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10533294-10533414 8.8e-06 42_[+5]_70 chr2L:8919823-8919943 8.8e-06 52_[+5]_60 chrX:2336658-2336778 8.8e-06 75_[+5]_37 chrX:17493771-17493891 8.8e-06 50_[+5]_62 chr3L:7595345-7595465 8.8e-06 82_[+5]_30 chr3L:22401640-22401760 8.8e-06 81_[+5]_31 chrX:9656421-9656541 1.8e-05 111_[+5]_1 chr3L:18078728-18078848 1.8e-05 29_[+5]_83 chr2R:20065644-20065764 2.6e-05 86_[+5]_26 chr3R:22698639-22698759 2.6e-05 84_[+5]_28 chr3L:19869886-19870006 3.1e-05 56_[+5]_56 chr3L:12030666-12030786 3.1e-05 94_[+5]_18 chr2R:19191835-19191955 3.1e-05 46_[+5]_66 chr3L:2549085-2549205 3.5e-05 83_[+5]_29 chrX:4435083-4435203 4.4e-05 73_[+5]_39 chr3R:10455029-10455149 4.4e-05 17_[+5]_95 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATBCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGAATBCC width=8 seqs=16 chr3R:10533294-10533414 ( 43) GGAATCCC 1 chr2L:8919823-8919943 ( 53) GGAATGCC 1 chrX:2336658-2336778 ( 76) GGAATGCC 1 chrX:17493771-17493891 ( 51) GGAATCCC 1 chr3L:7595345-7595465 ( 83) GGAATCCC 1 chr3L:22401640-22401760 ( 82) GGAATGCC 1 chrX:9656421-9656541 ( 112) GGAATTCC 1 chr3L:18078728-18078848 ( 30) GGAATTCC 1 chr2R:20065644-20065764 ( 87) GGGATGCC 1 chr3R:22698639-22698759 ( 85) GGGATCCC 1 chr3L:19869886-19870006 ( 57) GGCATTCC 1 chr3L:12030666-12030786 ( 95) GGCATTCC 1 chr2R:19191835-19191955 ( 47) GGCATTCC 1 chr3L:2549085-2549205 ( 84) GGGATTCC 1 chrX:4435083-4435203 ( 74) GGAATACC 1 chr3R:10455029-10455149 ( 18) GGAATACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATBCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 2.2e+002 -1064 -1064 259 -1064 -1064 -1064 259 -1064 90 23 18 -1064 157 -1064 -1064 -1064 -1064 -1064 -1064 156 -142 64 59 15 -1064 264 -1064 -1064 -1064 264 -1064 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATBCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 2.2e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.625000 0.187500 0.187500 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.125000 0.250000 0.250000 0.375000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGAATBCC MEME-5 regular expression -------------------------------------------------------------------------------- GGAAT[TCG]CC -------------------------------------------------------------------------------- Time 32.15 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8491178-8491298 1.98e-01 77_[+1(4.57e-05)]_35 chrX:8420855-8420975 1.52e-01 120 chrX:14142086-14142206 8.22e-01 120 chr2R:6242236-6242356 1.69e-01 120 chrX:14653694-14653814 1.55e-03 82_[+2(2.69e-06)]_30 chr2R:24197679-24197799 5.52e-02 120 chr2L:8529783-8529903 2.00e-01 120 chr2L:16390910-16391030 9.57e-01 120 chr2R:13506994-13507114 1.96e-03 91_[+1(1.52e-05)]_21 chr3L:3893430-3893550 2.45e-02 110_[+1(5.22e-05)]_2 chr2R:16156998-16157118 6.91e-05 59_[+2(3.93e-05)]_53 chr3L:22401640-22401760 1.94e-04 81_[+5(8.78e-06)]_31 chr2R:18746912-18747032 9.77e-01 120 chr2R:23843152-23843272 3.28e-03 85_[+1(2.71e-05)]_27 chr3R:29279710-29279830 9.21e-02 4_[+4(7.82e-05)]_108 chr3R:22698639-22698759 7.23e-05 59_[+2(2.19e-05)]_17_[+5(2.64e-05)]_\ 28 chr3R:30259708-30259828 9.26e-01 120 chr2L:3124489-3124609 5.15e-03 29_[+2(1.03e-05)]_83 chr2R:15046999-15047119 4.81e-01 120 chr2R:23262877-23262997 2.88e-03 12_[+2(1.53e-05)]_100 chr2R:19964384-19964504 8.39e-02 120 chr3L:6391496-6391616 6.35e-01 120 chr3R:29140211-29140331 6.89e-01 120 chr3R:11694486-11694606 5.06e-01 120 chr3L:12706581-12706701 4.93e-01 120 chr3R:15853689-15853809 7.55e-02 120 chr3L:22266693-22266813 8.90e-04 20_[+2(2.41e-05)]_92 chr2R:11833232-11833352 2.52e-04 85_[+1(2.21e-06)]_27 chr2R:8749909-8750029 8.09e-01 120 chr2R:19191835-19191955 4.21e-08 46_[+5(3.07e-05)]_17_[+3(9.08e-07)]_\ 23_[+2(4.86e-05)]_10 chrX:7222270-7222390 8.28e-01 120 chr3L:1693008-1693128 7.86e-01 120 chr3L:17603632-17603752 9.99e-01 120 chr3L:7595345-7595465 6.76e-04 82_[+5(8.78e-06)]_30 chr3R:15631043-15631163 3.05e-01 120 chr3R:26004491-26004611 2.51e-02 1_[+3(9.99e-05)]_111 chr2R:8995133-8995253 9.99e-01 120 chr2R:15000551-15000671 9.45e-01 120 chr3L:10545106-10545226 5.05e-04 11_[+1(1.19e-05)]_101 chr3R:20773341-20773461 2.16e-01 120 chr3R:13215261-13215381 9.78e-01 120 chr2L:10404118-10404238 2.50e-01 120 chr2R:17499287-17499407 7.53e-01 120 chrX:14017515-14017635 3.55e-01 120 chr3L:8860101-8860221 7.05e-02 120 chr2L:5288394-5288514 1.43e-01 92_[+4(7.82e-05)]_20 chr2L:10759758-10759878 6.79e-01 120 chr2R:15063829-15063949 1.00e+00 120 chr2R:15825529-15825649 8.48e-01 120 chrX:10580889-10581009 1.56e-02 8_[+1(2.21e-06)]_104 chr2L:19574543-19574663 2.86e-02 120 chr3R:29638517-29638637 9.47e-01 120 chr3L:10757109-10757229 7.38e-01 120 chr3R:27199406-27199526 8.70e-03 16_[+1(8.34e-05)]_17_[+1(4.57e-05)]_\ 71 chr2R:11048103-11048223 6.48e-01 120 chr3L:11382761-11382881 9.43e-01 120 chr3L:12030666-12030786 2.17e-01 94_[+5(3.07e-05)]_18 chr3L:15641678-15641798 2.47e-01 65_[+3(6.94e-05)]_47 chr3R:24024263-24024383 8.31e-01 120 chr2R:21225019-21225139 9.93e-01 120 chr2L:452216-452336 4.13e-01 120 chrX:7537932-7538052 3.01e-01 120 chrX:19173078-19173198 3.58e-02 11_[+1(4.34e-06)]_101 chrX:22631803-22631923 7.44e-02 19_[+1(5.22e-05)]_93 chr2R:21799435-21799555 6.02e-01 120 chrX:17493771-17493891 9.20e-04 50_[+5(8.78e-06)]_62 chrX:5301021-5301141 1.63e-02 44_[+1(4.57e-05)]_68 chr3L:4383225-4383345 1.00e+00 120 chr2R:11749588-11749708 4.50e-01 120 chrX:379686-379806 1.00e+00 120 chr3L:17590190-17590310 3.31e-01 120 chr3R:10829913-10830033 9.98e-01 120 chr3R:27222114-27222234 9.97e-01 120 chr3L:19869886-19870006 1.12e-04 56_[+5(3.07e-05)]_48_[+2(7.08e-05)] chr2R:9956157-9956277 9.05e-01 120 chr2L:4417018-4417138 9.77e-01 120 chrX:9401210-9401330 6.34e-01 120 chr2R:21883182-21883302 2.57e-01 8_[+1(2.18e-05)]_104 chr2L:3562522-3562642 7.12e-02 120 chr2L:16590879-16590999 9.91e-01 120 chrX:9399957-9400077 7.08e-01 120 chr2L:723913-724033 1.56e-01 120 chrX:6003962-6004082 9.99e-01 120 chr3L:6371543-6371663 7.58e-01 120 chr3L:15220475-15220595 9.94e-01 120 chr3L:2866984-2867104 3.54e-01 120 chr2R:11755358-11755478 9.95e-02 86_[+1(7.80e-05)]_26 chrX:13948267-13948387 5.16e-02 62_[+1(4.57e-05)]_50 chrX:21127393-21127513 9.39e-01 120 chrX:2336658-2336778 1.83e-05 75_[+5(8.78e-06)]_29_[+2(2.69e-06)] chr3L:20582507-20582627 4.87e-01 120 chr3L:15013414-15013534 4.11e-01 120 chr2L:20989607-20989727 4.09e-01 120 chr3L:2533169-2533289 8.99e-01 120 chr2L:3351957-3352077 3.12e-01 120 chr3R:8922964-8923084 7.75e-02 120 chr2L:8919823-8919943 8.83e-02 52_[+5(8.78e-06)]_60 chrX:14098404-14098524 9.96e-01 120 chr3L:12058591-12058711 9.97e-01 120 chr3R:29290961-29291081 2.22e-02 21_[+1(2.44e-05)]_91 chr3L:21720977-21721097 7.54e-01 120 chr2L:5372680-5372800 5.55e-01 120 chr3L:3304224-3304344 1.27e-04 28_[+3(1.85e-06)]_84 chr3R:15596044-15596164 8.62e-01 120 chr3L:20404183-20404303 1.03e-03 38_[+4(3.17e-06)]_74 chr3L:21253109-21253229 9.83e-01 120 chr3L:18078728-18078848 1.16e-02 29_[+5(1.79e-05)]_83 chr2L:3582854-3582974 5.82e-01 120 chr3R:7025381-7025501 6.63e-01 120 chr3R:29300185-29300305 1.37e-01 120 chr2R:14076253-14076373 8.02e-01 120 chr3L:20635727-20635847 5.19e-02 120 chr3L:7632940-7633060 9.40e-01 120 chr2R:22798577-22798697 6.17e-03 85_[+2(2.69e-06)]_27 chr3L:10387676-10387796 1.51e-01 120 chr3R:21935295-21935415 3.01e-02 [+1(4.34e-06)]_112 chr3L:8013453-8013573 2.31e-01 120 chr2R:8595940-8596060 9.88e-01 120 chr3L:10928853-10928973 9.45e-01 120 chrX:5020147-5020267 1.00e+00 120 chrX:14134093-14134213 9.42e-01 120 chrX:9656421-9656541 5.15e-02 111_[+5(1.79e-05)]_1 chr3L:16259636-16259756 1.00e+00 120 chr2L:15390602-15390722 9.99e-01 120 chr2R:11544149-11544269 9.42e-01 120 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-------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n06.farnam.hpc.yale.internal ********************************************************************************