******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10654.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:8295188-8295308 1.0000 120 chr2R:18994195-18994315 1.0000 120 chr3R:24817170-24817290 1.0000 120 chr2R:17533749-17533869 1.0000 120 chrX:16103599-16103719 1.0000 120 chrX:20506052-20506172 1.0000 120 chr2L:14377010-14377130 1.0000 120 chr2L:8071693-8071813 1.0000 120 chr3L:12504147-12504267 1.0000 120 chr2L:8528509-8528629 1.0000 120 chr3L:10745731-10745851 1.0000 120 chr3L:9461738-9461858 1.0000 120 chr2R:21018388-21018508 1.0000 120 chr3R:16573888-16574008 1.0000 120 chr3L:20771241-20771361 1.0000 120 chr3L:20000369-20000489 1.0000 120 chrX:17473405-17473525 1.0000 120 chr3R:19627991-19628111 1.0000 120 chr2L:19517452-19517572 1.0000 120 chr4:1064389-1064509 1.0000 120 chr3R:25754965-25755085 1.0000 120 chr3R:26937574-26937694 1.0000 120 chr2R:18883659-18883779 1.0000 120 chr3L:6807641-6807761 1.0000 120 chr3L:3288544-3288664 1.0000 120 chr3L:8029471-8029591 1.0000 120 chrX:19352983-19353103 1.0000 120 chr3R:26105974-26106094 1.0000 120 chr2R:24293571-24293691 1.0000 120 chr3L:19674438-19674558 1.0000 120 chr2R:23180951-23181071 1.0000 120 chr3R:31744159-31744279 1.0000 120 chr3L:1534238-1534358 1.0000 120 chr3R:14077147-14077267 1.0000 120 chr3R:21420005-21420125 1.0000 120 chr2R:20641468-20641588 1.0000 120 chr3R:22494738-22494858 1.0000 120 chr2L:21619216-21619336 1.0000 120 chr3R:23181083-23181203 1.0000 120 chr2R:2567065-2567185 1.0000 120 chr3L:8024972-8025092 1.0000 120 chr3R:27937878-27937998 1.0000 120 chr3L:797034-797154 1.0000 120 chr2L:18505721-18505841 1.0000 120 chr3L:8445086-8445206 1.0000 120 chr2L:7266088-7266208 1.0000 120 chr3R:30734702-30734822 1.0000 120 chr3R:17231670-17231790 1.0000 120 chr2L:2494651-2494771 1.0000 120 chr3L:12501417-12501537 1.0000 120 chr3R:31169095-31169215 1.0000 120 chr3L:13197604-13197724 1.0000 120 chrX:7571334-7571454 1.0000 120 chr3L:1151812-1151932 1.0000 120 chr3R:18804682-18804802 1.0000 120 chr2L:9564696-9564816 1.0000 120 chrX:5966013-5966133 1.0000 120 chr3L:4603527-4603647 1.0000 120 chr2R:20257422-20257542 1.0000 120 chr2L:1428401-1428521 1.0000 120 chr2L:295024-295144 1.0000 120 chr3L:11993135-11993255 1.0000 120 chr3L:13411164-13411284 1.0000 120 chrX:2011764-2011884 1.0000 120 chr2L:4224261-4224381 1.0000 120 chr3L:1216585-1216705 1.0000 120 chrX:9352822-9352942 1.0000 120 chr2R:7878994-7879114 1.0000 120 chrX:15591930-15592050 1.0000 120 chr3L:22163854-22163974 1.0000 120 chr3L:16710319-16710439 1.0000 120 chr2R:23574924-23575044 1.0000 120 chr2R:20906684-20906804 1.0000 120 chr2L:15061508-15061628 1.0000 120 chr3L:12336385-12336505 1.0000 120 chr3R:16209226-16209346 1.0000 120 chr3R:8171671-8171791 1.0000 120 chr3L:9505482-9505602 1.0000 120 chr3L:772302-772422 1.0000 120 chr3L:12271337-12271457 1.0000 120 chr3L:13189404-13189524 1.0000 120 chr2R:21503271-21503391 1.0000 120 chr3R:8354565-8354685 1.0000 120 chr2L:5520093-5520213 1.0000 120 chr3L:16544403-16544523 1.0000 120 chrX:12242524-12242644 1.0000 120 chr3R:20588524-20588644 1.0000 120 chr3L:10206361-10206481 1.0000 120 chr3R:27138153-27138273 1.0000 120 chrX:8125240-8125360 1.0000 120 chr3R:13999692-13999812 1.0000 120 chrX:11660606-11660726 1.0000 120 chr2L:12351073-12351193 1.0000 120 chr2L:12002938-12003058 1.0000 120 chr3L:16571564-16571684 1.0000 120 chr2R:21060663-21060783 1.0000 120 chrX:3968800-3968920 1.0000 120 chr3L:18349391-18349511 1.0000 120 chr2R:11639760-11639880 1.0000 120 chr3L:14335913-14336033 1.0000 120 chr3R:21350114-21350234 1.0000 120 chr3R:5998379-5998499 1.0000 120 chr3R:19877625-19877745 1.0000 120 chr3L:13923485-13923605 1.0000 120 chr3L:14999734-14999854 1.0000 120 chr2R:9109748-9109868 1.0000 120 chr2L:13073886-13074006 1.0000 120 chr3L:4254406-4254526 1.0000 120 chr3L:8629093-8629213 1.0000 120 chr3R:21993049-21993169 1.0000 120 chr2R:14909956-14910076 1.0000 120 chr2R:15477991-15478111 1.0000 120 chr3R:20008798-20008918 1.0000 120 chr3R:18242155-18242275 1.0000 120 chr2L:6907812-6907932 1.0000 120 chrX:13644172-13644292 1.0000 120 chr2R:14645085-14645205 1.0000 120 chr3L:11334176-11334296 1.0000 120 chr3R:8954950-8955070 1.0000 120 chr3R:5636894-5637014 1.0000 120 chr3R:19031262-19031382 1.0000 120 chr3R:29522340-29522460 1.0000 120 chrX:5639241-5639361 1.0000 120 chr2R:8914053-8914173 1.0000 120 chr3L:4607845-4607965 1.0000 120 chrX:9137302-9137422 1.0000 120 chrX:7617105-7617225 1.0000 120 chr2L:11331818-11331938 1.0000 120 chr3L:5988781-5988901 1.0000 120 chrX:5285966-5286086 1.0000 120 chr3L:554703-554823 1.0000 120 chr2R:7525719-7525839 1.0000 120 chr3L:20471091-20471211 1.0000 120 chr3L:14190183-14190303 1.0000 120 chr3L:11074582-11074702 1.0000 120 chr2L:4440986-4441106 1.0000 120 chr2R:13999324-13999444 1.0000 120 chr3R:30413909-30414029 1.0000 120 chr3R:8960437-8960557 1.0000 120 chr3R:29039825-29039945 1.0000 120 chr2R:18528517-18528637 1.0000 120 chr2R:6133023-6133143 1.0000 120 chr3R:10564378-10564498 1.0000 120 chrX:10775792-10775912 1.0000 120 chr3L:20194855-20194975 1.0000 120 chr2L:1456378-1456498 1.0000 120 chrX:12925980-12926100 1.0000 120 chrX:9349324-9349444 1.0000 120 chr3L:13450273-13450393 1.0000 120 chr3L:1295778-1295898 1.0000 120 chr2L:16317913-16318033 1.0000 120 chr3L:15094902-15095022 1.0000 120 chr2L:18822956-18823076 1.0000 120 chr3R:16469752-16469872 1.0000 120 chr2R:9006942-9007062 1.0000 120 chr2L:19159294-19159414 1.0000 120 chr3R:10696509-10696629 1.0000 120 chr3L:6522928-6523048 1.0000 120 chr2R:11275903-11276023 1.0000 120 chrX:7333330-7333450 1.0000 120 chr3L:16131922-16132042 1.0000 120 chr3R:18906453-18906573 1.0000 120 chr3L:2371990-2372110 1.0000 120 chr2L:5326971-5327091 1.0000 120 chr3R:26923917-26924037 1.0000 120 chr2L:4847287-4847407 1.0000 120 chr3L:17242265-17242385 1.0000 120 chr3L:5288267-5288387 1.0000 120 chr2R:24657134-24657254 1.0000 120 chr3L:13479917-13480037 1.0000 120 chr3L:1035077-1035197 1.0000 120 chr3L:7249342-7249462 1.0000 120 chrX:1944311-1944431 1.0000 120 chr3R:21273779-21273899 1.0000 120 chr2L:16352682-16352802 1.0000 120 chr2L:17243497-17243617 1.0000 120 chr2R:8615292-8615412 1.0000 120 chr2L:10468563-10468683 1.0000 120 chrX:3431855-3431975 1.0000 120 chr3R:25123351-25123471 1.0000 120 chr3L:10344213-10344333 1.0000 120 chrX:19667068-19667188 1.0000 120 chr2L:20881538-20881658 1.0000 120 chr3L:14545430-14545550 1.0000 120 chr3R:25004898-25005018 1.0000 120 chr3R:25880427-25880547 1.0000 120 chr3R:17400847-17400967 1.0000 120 chr3R:5588322-5588442 1.0000 120 chrX:8777290-8777410 1.0000 120 chr2L:277328-277448 1.0000 120 chr2R:8144864-8144984 1.0000 120 chr2R:11738650-11738770 1.0000 120 chr3R:12718309-12718429 1.0000 120 chr3L:15563031-15563151 1.0000 120 chrX:7728382-7728502 1.0000 120 chr3L:18204068-18204188 1.0000 120 chr3R:13817997-13818117 1.0000 120 chr3L:13905604-13905724 1.0000 120 chr2R:22548218-22548338 1.0000 120 chrX:13368270-13368390 1.0000 120 chr3L:3935797-3935917 1.0000 120 chr2L:3472367-3472487 1.0000 120 chr2R:23940222-23940342 1.0000 120 chr2R:7052463-7052583 1.0000 120 chr2L:4856269-4856389 1.0000 120 chr3R:15837196-15837316 1.0000 120 chrX:13258805-13258925 1.0000 120 chr2R:12633415-12633535 1.0000 120 chrX:15615517-15615637 1.0000 120 chr3L:17653594-17653714 1.0000 120 chr3R:29997751-29997871 1.0000 120 chr3R:24917929-24918049 1.0000 120 chr2L:20649948-20650068 1.0000 120 chr3R:8789144-8789264 1.0000 120 chrX:3476136-3476256 1.0000 120 chr3R:29040758-29040878 1.0000 120 chr2L:19003103-19003223 1.0000 120 chrX:11657251-11657371 1.0000 120 chrX:2087657-2087777 1.0000 120 chr3L:5974722-5974842 1.0000 120 chr3R:12016987-12017107 1.0000 120 chr2L:11499037-11499157 1.0000 120 chr2L:6874660-6874780 1.0000 120 chr2L:21787095-21787215 1.0000 120 chr3L:7090928-7091048 1.0000 120 chr3R:22236875-22236995 1.0000 120 chr2L:20416953-20417073 1.0000 120 chr3R:30336240-30336360 1.0000 120 chr3L:14780326-14780446 1.0000 120 chr3L:1029737-1029857 1.0000 120 chr2R:20086153-20086273 1.0000 120 chr3L:14545632-14545752 1.0000 120 chr2R:24869829-24869949 1.0000 120 chr3R:30797387-30797507 1.0000 120 chr3R:10560717-10560837 1.0000 120 chr3R:6504553-6504673 1.0000 120 chr2R:15311176-15311296 1.0000 120 chr3L:5185257-5185377 1.0000 120 chr2L:14122865-14122985 1.0000 120 chrX:18869598-18869718 1.0000 120 chr3L:20183400-20183520 1.0000 120 chr2L:19577561-19577681 1.0000 120 chr2R:13929430-13929550 1.0000 120 chrX:11629111-11629231 1.0000 120 chr3R:5591489-5591609 1.0000 120 chr3L:3300460-3300580 1.0000 120 chr3R:28631959-28632079 1.0000 120 chrX:1273026-1273146 1.0000 120 chr3L:15715891-15716011 1.0000 120 chr2R:18676529-18676649 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG10654/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10654.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.339 C 0.163 G 0.162 T 0.335 Background letter frequencies (from file dataset with add-one prior applied): A 0.339 C 0.163 G 0.162 T 0.335 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTGCGGSS MEME-1 width = 8 sites = 11 llr = 116 E-value = 6.7e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTGCGGSS MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 71:7:165 probability G 3:a:a945 matrix T :9:3:::: bits 2.6 * * 2.4 * * 2.1 * ** 1.8 * * ** Relative 1.6 * ****** Entropy 1.3 ******** (15.2 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTGCGGCG consensus G T GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGSS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7525719-7525839 3 9.99e-07 AC CTGCGGCG TTTTCCAACA chr3L:14999734-14999854 31 3.00e-06 TGCATGTATA CTGCGGGG AATATTTCCA chr3L:20000369-20000489 85 3.00e-06 ATATTTTGCT CTGCGGGG CTCCATGGTC chr2L:19517452-19517572 97 4.99e-06 CAGTTCCACT GTGCGGCG AAGCTTTTGC chr3R:19031262-19031382 24 5.99e-06 TTACATACAA GTGCGGCC ACTAAAATAG chr3R:6504553-6504673 66 6.98e-06 ACGATGCTGT GTGCGGGG AAAAGCCAAT chr2R:14645085-14645205 60 1.05e-05 CACAGGCGCA CTGTGGCG TTTTAGCTTT chr2L:13073886-13074006 10 1.31e-05 CGGGTGCTT CTGTGGCC GATGCACTGC chr3L:9461738-9461858 36 1.31e-05 TCCTAAACAG CTGTGGCC TTGAATAGAT chr3L:12271337-12271457 7 1.71e-05 AACTGC CCGCGGGC ATATTTAGTG chr2L:14122865-14122985 83 2.01e-05 TCCCCATCTA CTGCGCCC TTTGAAGCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGSS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7525719-7525839 1e-06 2_[+1]_110 chr3L:14999734-14999854 3e-06 30_[+1]_82 chr3L:20000369-20000489 3e-06 84_[+1]_28 chr2L:19517452-19517572 5e-06 96_[+1]_16 chr3R:19031262-19031382 6e-06 23_[+1]_89 chr3R:6504553-6504673 7e-06 65_[+1]_47 chr2R:14645085-14645205 1.1e-05 59_[+1]_53 chr2L:13073886-13074006 1.3e-05 9_[+1]_103 chr3L:9461738-9461858 1.3e-05 35_[+1]_77 chr3L:12271337-12271457 1.7e-05 6_[+1]_106 chr2L:14122865-14122985 2e-05 82_[+1]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGSS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTGCGGSS width=8 seqs=11 chr2R:7525719-7525839 ( 3) CTGCGGCG 1 chr3L:14999734-14999854 ( 31) CTGCGGGG 1 chr3L:20000369-20000489 ( 85) CTGCGGGG 1 chr2L:19517452-19517572 ( 97) GTGCGGCG 1 chr3R:19031262-19031382 ( 24) GTGCGGCC 1 chr3R:6504553-6504673 ( 66) GTGCGGGG 1 chr2R:14645085-14645205 ( 60) CTGTGGCG 1 chr2L:13073886-13074006 ( 10) CTGTGGCC 1 chr3L:9461738-9461858 ( 36) CTGTGGCC 1 chr3L:12271337-12271457 ( 7) CCGCGGGC 1 chr2L:14122865-14122985 ( 83) CTGCGCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGSS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 6.7e+002 -1010 215 75 -1010 -1010 -84 -1010 144 -1010 -1010 262 -1010 -1010 215 -1010 -30 -1010 -1010 262 -1010 -1010 -84 248 -1010 -1010 196 116 -1010 -1010 148 175 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGSS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 6.7e+002 0.000000 0.727273 0.272727 0.000000 0.000000 0.090909 0.000000 0.909091 0.000000 0.000000 1.000000 0.000000 0.000000 0.727273 0.000000 0.272727 0.000000 0.000000 1.000000 0.000000 0.000000 0.090909 0.909091 0.000000 0.000000 0.636364 0.363636 0.000000 0.000000 0.454545 0.545455 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTGCGGSS MEME-1 regular expression -------------------------------------------------------------------------------- [CG]TG[CT]GG[CG][GC] -------------------------------------------------------------------------------- Time 7.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGGRGG MEME-2 width = 8 sites = 10 llr = 106 E-value = 3.2e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGGRGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::14:: pos.-specific C :7::2::: probability G a3:975aa matrix T ::a1:1:: bits 2.6 * ** 2.4 * ** 2.1 * * ** 1.8 ** * ** Relative 1.6 **** ** Entropy 1.3 ***** ** (15.3 bits) 1.0 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCTGGGGG consensus G CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGRGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:21787095-21787215 6 9.87e-07 ATTTC GCTGGGGG CAGACTGAAA chr2R:8144864-8144984 81 1.97e-06 GTGTATGATA GGTGGGGG ACTTAATCAA chr3L:5988781-5988901 14 1.97e-06 AGGCGGTGGT GGTGGGGG ACTTGCAGAG chr2R:20641468-20641588 63 4.03e-06 TTCCCAGCGA GCTGGAGG GCTGCTGAAC chr2R:23180951-23181071 110 7.08e-06 TCTGGAAGGT GGTGGAGG TGC chrX:12925980-12926100 103 1.01e-05 CGTGGTGCAG GCTGCAGG ACCACTTGGC chr2L:4440986-4441106 100 1.01e-05 AAATCACTTC GCTGCAGG AATTTCTCGC chr3R:31744159-31744279 43 1.22e-05 TCGCCTAGTT GCTGGTGG CGTTCGCCTC chr2R:17533749-17533869 50 1.43e-05 GAATTAGGTT GCTGAGGG AGTAATAATT chrX:2087657-2087777 20 1.63e-05 GCCTCGTTCT GCTTGGGG AAAGTTCAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGRGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:21787095-21787215 9.9e-07 5_[+2]_107 chr2R:8144864-8144984 2e-06 80_[+2]_32 chr3L:5988781-5988901 2e-06 13_[+2]_99 chr2R:20641468-20641588 4e-06 62_[+2]_50 chr2R:23180951-23181071 7.1e-06 109_[+2]_3 chrX:12925980-12926100 1e-05 102_[+2]_10 chr2L:4440986-4441106 1e-05 99_[+2]_13 chr3R:31744159-31744279 1.2e-05 42_[+2]_70 chr2R:17533749-17533869 1.4e-05 49_[+2]_63 chrX:2087657-2087777 1.6e-05 19_[+2]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGRGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGGRGG width=8 seqs=10 chr2L:21787095-21787215 ( 6) GCTGGGGG 1 chr2R:8144864-8144984 ( 81) GGTGGGGG 1 chr3L:5988781-5988901 ( 14) GGTGGGGG 1 chr2R:20641468-20641588 ( 63) GCTGGAGG 1 chr2R:23180951-23181071 ( 110) GGTGGAGG 1 chrX:12925980-12926100 ( 103) GCTGCAGG 1 chr2L:4440986-4441106 ( 100) GCTGCAGG 1 chr3R:31744159-31744279 ( 43) GCTGGTGG 1 chr2R:17533749-17533869 ( 50) GCTGAGGG 1 chrX:2087657-2087777 ( 20) GCTTGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGRGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 3.2e+003 -997 -997 262 -997 -997 210 89 -997 -997 -997 -997 157 -997 -997 247 -174 -176 29 211 -997 24 -997 162 -174 -997 -997 262 -997 -997 -997 262 -997 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGRGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 3.2e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.700000 0.300000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.900000 0.100000 0.100000 0.200000 0.700000 0.000000 0.400000 0.000000 0.500000 0.100000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGRGG MEME-2 regular expression -------------------------------------------------------------------------------- G[CG]TG[GC][GA]GG -------------------------------------------------------------------------------- Time 13.76 secs. ******************************************************************************** ******************************************************************************** MOTIF GWTKGCCC MEME-3 width = 8 sites = 18 llr = 172 E-value = 6.5e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GWTKGCCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :41::::: pos.-specific C :11:1a8a probability G a:179:2: matrix T :4731::: bits 2.6 * * * 2.4 * * * 2.1 * * * 1.8 * **** Relative 1.6 * **** Entropy 1.3 * ***** (13.8 bits) 1.0 * ***** 0.8 * ***** 0.5 * ***** 0.3 ******** 0.0 -------- Multilevel GATGGCCC consensus T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWTKGCCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7333330-7333450 57 2.07e-06 CGCCAAATTT GTTGGCCC CTCTATTTAC chr2R:23940222-23940342 94 4.16e-06 GAATCCCCCT GATGGCCC CTTATATCGA chr3R:8954950-8955070 2 7.17e-06 A GTCGGCCC ACACTAGCCA chrX:8125240-8125360 26 7.17e-06 CTGTCGCACA GTGGGCCC AATCGTCGCA chr3L:15715891-15716011 43 1.35e-05 TGCTCGCCTT GTTTGCCC TACGTTAATT chr2R:8615292-8615412 59 1.35e-05 GCTTGTTCGT GTTTGCCC AAGGAGTCAA chr2R:6133023-6133143 3 1.35e-05 TT GTTTGCCC ATCCCTTCCC chr2R:21018388-21018508 73 1.35e-05 TTCAAATTAA GTTTGCCC AATTTCCCAA chr2R:20641468-20641588 81 1.98e-05 GCTGCTGAAC GATTGCCC AGTCACATTC chr2L:3472367-3472487 97 2.19e-05 TGCCTGTGCA GATGGCGC CACCATGACG chr2R:20906684-20906804 70 2.19e-05 ACCAACGGTA GATGGCGC CAGTGCAACA chr3L:3288544-3288664 96 2.19e-05 AAGCTGTGTA GATGGCGC TGCTGAGTTC chr3R:6504553-6504673 14 2.71e-05 CCAGCAAACA GAAGGCCC ATAATGTGTA chr2L:20881538-20881658 61 2.71e-05 GGATTGAACG GCCGGCCC TACAATGCCG chr3R:21350114-21350234 106 3.12e-05 TAAGAAATTA GCAGGCCC GTCATTG chrX:12925980-12926100 63 3.53e-05 ctcaagctAA GTGTGCCC TTTTTCGCTA chrX:13368270-13368390 51 4.77e-05 AATTCTTTAA GATGCCCC AAGTAATTGA chr3L:1295778-1295898 103 8.18e-05 CTTTCTGAGC GATGTCCC ACCACTGGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWTKGCCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7333330-7333450 2.1e-06 56_[+3]_56 chr2R:23940222-23940342 4.2e-06 93_[+3]_19 chr3R:8954950-8955070 7.2e-06 1_[+3]_111 chrX:8125240-8125360 7.2e-06 25_[+3]_87 chr3L:15715891-15716011 1.3e-05 42_[+3]_70 chr2R:8615292-8615412 1.3e-05 58_[+3]_54 chr2R:6133023-6133143 1.3e-05 2_[+3]_110 chr2R:21018388-21018508 1.3e-05 72_[+3]_40 chr2R:20641468-20641588 2e-05 80_[+3]_32 chr2L:3472367-3472487 2.2e-05 96_[+3]_16 chr2R:20906684-20906804 2.2e-05 69_[+3]_43 chr3L:3288544-3288664 2.2e-05 95_[+3]_17 chr3R:6504553-6504673 2.7e-05 13_[+3]_99 chr2L:20881538-20881658 2.7e-05 60_[+3]_52 chr3R:21350114-21350234 3.1e-05 105_[+3]_7 chrX:12925980-12926100 3.5e-05 62_[+3]_50 chrX:13368270-13368390 4.8e-05 50_[+3]_62 chr3L:1295778-1295898 8.2e-05 102_[+3]_10 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWTKGCCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GWTKGCCC width=8 seqs=18 chrX:7333330-7333450 ( 57) GTTGGCCC 1 chr2R:23940222-23940342 ( 94) GATGGCCC 1 chr3R:8954950-8955070 ( 2) GTCGGCCC 1 chrX:8125240-8125360 ( 26) GTGGGCCC 1 chr3L:15715891-15716011 ( 43) GTTTGCCC 1 chr2R:8615292-8615412 ( 59) GTTTGCCC 1 chr2R:6133023-6133143 ( 3) GTTTGCCC 1 chr2R:21018388-21018508 ( 73) GTTTGCCC 1 chr2R:20641468-20641588 ( 81) GATTGCCC 1 chr2L:3472367-3472487 ( 97) GATGGCGC 1 chr2R:20906684-20906804 ( 70) GATGGCGC 1 chr3L:3288544-3288664 ( 96) GATGGCGC 1 chr3R:6504553-6504673 ( 14) GAAGGCCC 1 chr2L:20881538-20881658 ( 61) GCCGGCCC 1 chr3R:21350114-21350234 ( 106) GCAGGCCC 1 chrX:12925980-12926100 ( 63) GTGTGCCC 1 chrX:13368270-13368390 ( 51) GATGCCCC 1 chr3L:1295778-1295898 ( 103) GATGTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWTKGCCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 6.5e+003 -1081 -1081 262 -1081 39 -55 -1081 41 -161 -55 -55 99 -1081 -1081 204 -1 -1081 -155 245 -259 -1081 261 -1081 -1081 -1081 235 4 -1081 -1081 261 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWTKGCCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 6.5e+003 0.000000 0.000000 1.000000 0.000000 0.444444 0.111111 0.000000 0.444444 0.111111 0.111111 0.111111 0.666667 0.000000 0.000000 0.666667 0.333333 0.000000 0.055556 0.888889 0.055556 0.000000 1.000000 0.000000 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GWTKGCCC MEME-3 regular expression -------------------------------------------------------------------------------- G[AT]T[GT]GCCC -------------------------------------------------------------------------------- Time 20.03 secs. ******************************************************************************** ******************************************************************************** MOTIF CSGSMGCK MEME-4 width = 8 sites = 8 llr = 87 E-value = 1.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSGSMGCK MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::4::: pos.-specific C a6:65:a: probability G :4a4:a:6 matrix T ::::1::4 bits 2.6 * * ** 2.4 * * ** 2.1 * * ** 1.8 * * ** Relative 1.6 **** ** Entropy 1.3 **** *** (15.8 bits) 1.0 **** *** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGCCGCG consensus G GA T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGSMGCK MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:5185257-5185377 47 1.94e-06 CATCATTCGA CGGGCGCG TTTGGCTCTC chr3R:6504553-6504673 97 2.96e-06 GATTGAGTAG CCGCAGCG CTGACCCGCT chr2L:21619216-21619336 31 2.96e-06 gaaagcgatt ccgcagcg aaaatttgtt chr2R:8914053-8914173 13 3.97e-06 AACGACTTAA CCGCCGCT AACGGCATAA chrX:2087657-2087777 73 6.00e-06 TGTAGGTCCG CGGCAGCG GGTGCTATTA chr3R:12016987-12017107 37 8.01e-06 GCACAATACT CGGCCGCT CTGGTTACCT chr3L:22163854-22163974 99 8.01e-06 GGACTATACT CCGGCGCT CCATGGCGCT chr2L:20649948-20650068 26 1.51e-05 TTCCAAATTA CCGGTGCG ATGAAAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGSMGCK MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:5185257-5185377 1.9e-06 46_[+4]_66 chr3R:6504553-6504673 3e-06 96_[+4]_16 chr2L:21619216-21619336 3e-06 30_[+4]_82 chr2R:8914053-8914173 4e-06 12_[+4]_100 chrX:2087657-2087777 6e-06 72_[+4]_40 chr3R:12016987-12017107 8e-06 36_[+4]_76 chr3L:22163854-22163974 8e-06 98_[+4]_14 chr2L:20649948-20650068 1.5e-05 25_[+4]_87 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGSMGCK MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSGSMGCK width=8 seqs=8 chr3L:5185257-5185377 ( 47) CGGGCGCG 1 chr3R:6504553-6504673 ( 97) CCGCAGCG 1 chr2L:21619216-21619336 ( 31) CCGCAGCG 1 chr2R:8914053-8914173 ( 13) CCGCCGCT 1 chrX:2087657-2087777 ( 73) CGGCAGCG 1 chr3R:12016987-12017107 ( 37) CGGCCGCT 1 chr3L:22163854-22163974 ( 99) CCGGCGCT 1 chr2L:20649948-20650068 ( 26) CCGGTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGSMGCK MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 1.8e+004 -965 261 -965 -965 -965 194 121 -965 -965 -965 262 -965 -965 194 121 -965 15 161 -965 -142 -965 -965 262 -965 -965 261 -965 -965 -965 -965 194 16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGSMGCK MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.8e+004 0.000000 1.000000 0.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.625000 0.375000 0.000000 0.375000 0.500000 0.000000 0.125000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.375000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSGSMGCK MEME-4 regular expression -------------------------------------------------------------------------------- C[CG]G[CG][CA]GC[GT] -------------------------------------------------------------------------------- Time 26.26 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTCAGTG MEME-5 width = 8 sites = 21 llr = 197 E-value = 6.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTCAGTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :23a:3:: probability G :::::7:a matrix T a87:::a: bits 2.6 * * 2.4 * * 2.1 * * 1.8 * * * Relative 1.6 ***** Entropy 1.3 * ***** (13.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel TTTCAGTG consensus CC C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAGTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1273026-1273146 99 2.72e-05 ATTGATTTTT TTTCAGTG ATCACACATG chr3R:10560717-10560837 111 2.72e-05 TCTACATTTT TTTCAGTG TC chr3L:13450273-13450393 63 2.72e-05 GGGTTCTGGT TTTCAGTG AAAGTTAAAC chr2L:11331818-11331938 113 2.72e-05 GTTTTTTTTT TTTCAGTG chrX:5639241-5639361 94 2.72e-05 TCAATTAAAT TTTCAGTG TAACGCCACG chr3R:8171671-8171791 102 2.72e-05 CATTTTTTTT TTCCAGTG CACCTCCAAC chr3R:30734702-30734822 8 2.72e-05 ACATATC TTTCAGTG CACCTGAAGA chr3L:8024972-8025092 58 2.72e-05 AAAACTTAAA TTTCAGTG AGAACCTTTT chrX:19352983-19353103 59 2.72e-05 ACACGTTTTG TTTCAGTG CTTTGTTGCT chr2R:8144864-8144984 66 4.04e-05 AAACCTTTTC TCTCAGTG TATGATAGGT chr3R:29522340-29522460 111 4.04e-05 CGACCTTTTC TCCCAGTG CA chr3L:11334176-11334296 110 4.04e-05 CTATTTTGTA TCTCAGTG CAT chr2L:12351073-12351193 101 4.04e-05 TCTTAGTTGT TCTCAGTG TACTTGCATC chr2L:18505721-18505841 57 4.04e-05 ATCGAATTTT TCCCAGTG TGCCTTCTAT chr2R:20086153-20086273 106 6.77e-05 TGGGTATTTT TTCCACTG TAGGAAA chr3L:15563031-15563151 79 6.77e-05 TTAAATGTGT TTCCACTG CGTTTCAAGC chr2L:20881538-20881658 81 6.77e-05 CAATGCCGGT TTTCACTG TACCTTCAGA chr3L:7249342-7249462 69 6.77e-05 TATAAGCTGT TTCCACTG ATACATAACT chr3L:19674438-19674558 25 6.77e-05 ATAGTTTACA TTTCACTG ATTAACTTAT chr4:1064389-1064509 44 6.77e-05 tctggtcatt ttccactg gtatatcgag chr2R:18994195-18994315 111 9.42e-05 CTTAAATTTG CTTCAGTG TA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAGTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1273026-1273146 2.7e-05 98_[+5]_14 chr3R:10560717-10560837 2.7e-05 110_[+5]_2 chr3L:13450273-13450393 2.7e-05 62_[+5]_50 chr2L:11331818-11331938 2.7e-05 112_[+5] chrX:5639241-5639361 2.7e-05 93_[+5]_19 chr3R:8171671-8171791 2.7e-05 101_[+5]_11 chr3R:30734702-30734822 2.7e-05 7_[+5]_105 chr3L:8024972-8025092 2.7e-05 57_[+5]_55 chrX:19352983-19353103 2.7e-05 58_[+5]_54 chr2R:8144864-8144984 4e-05 65_[+5]_47 chr3R:29522340-29522460 4e-05 110_[+5]_2 chr3L:11334176-11334296 4e-05 109_[+5]_3 chr2L:12351073-12351193 4e-05 100_[+5]_12 chr2L:18505721-18505841 4e-05 56_[+5]_56 chr2R:20086153-20086273 6.8e-05 105_[+5]_7 chr3L:15563031-15563151 6.8e-05 78_[+5]_34 chr2L:20881538-20881658 6.8e-05 80_[+5]_32 chr3L:7249342-7249462 6.8e-05 68_[+5]_44 chr3L:19674438-19674558 6.8e-05 24_[+5]_88 chr4:1064389-1064509 6.8e-05 43_[+5]_69 chr2R:18994195-18994315 9.4e-05 110_[+5]_2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAGTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTCAGTG width=8 seqs=21 chrX:1273026-1273146 ( 99) TTTCAGTG 1 chr3R:10560717-10560837 ( 111) TTTCAGTG 1 chr3L:13450273-13450393 ( 63) TTTCAGTG 1 chr2L:11331818-11331938 ( 113) TTTCAGTG 1 chrX:5639241-5639361 ( 94) TTTCAGTG 1 chr3R:8171671-8171791 ( 102) TTCCAGTG 1 chr3R:30734702-30734822 ( 8) TTTCAGTG 1 chr3L:8024972-8025092 ( 58) TTTCAGTG 1 chrX:19352983-19353103 ( 59) TTTCAGTG 1 chr2R:8144864-8144984 ( 66) TCTCAGTG 1 chr3R:29522340-29522460 ( 111) TCCCAGTG 1 chr3L:11334176-11334296 ( 110) TCTCAGTG 1 chr2L:12351073-12351193 ( 101) TCTCAGTG 1 chr2L:18505721-18505841 ( 57) TCCCAGTG 1 chr2R:20086153-20086273 ( 106) TTCCACTG 1 chr3L:15563031-15563151 ( 79) TTCCACTG 1 chr2L:20881538-20881658 ( 81) TTTCACTG 1 chr3L:7249342-7249462 ( 69) TTCCACTG 1 chr3L:19674438-19674558 ( 25) TTTCACTG 1 chr4:1064389-1064509 ( 44) TTCCACTG 1 chr2R:18994195-18994315 ( 111) CTTCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAGTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6976 E= 6.7e+003 -1104 -178 -1104 150 -1104 54 -1104 118 -1104 103 -1104 99 -1104 261 -1104 -1104 156 -1104 -1104 -1104 -1104 81 214 -1104 -1104 -1104 -1104 158 -1104 -1104 262 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAGTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 6.7e+003 0.000000 0.047619 0.000000 0.952381 0.000000 0.238095 0.000000 0.761905 0.000000 0.333333 0.000000 0.666667 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.285714 0.714286 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTCAGTG MEME-5 regular expression -------------------------------------------------------------------------------- T[TC][TC]CA[GC]TG -------------------------------------------------------------------------------- Time 32.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:8295188-8295308 9.77e-01 120 chr2R:18994195-18994315 2.04e-01 110_[+5(9.42e-05)]_2 chr3R:24817170-24817290 9.19e-01 120 chr2R:17533749-17533869 3.23e-02 49_[+2(1.43e-05)]_63 chrX:16103599-16103719 1.54e-01 120 chrX:20506052-20506172 5.46e-01 120 chr2L:14377010-14377130 6.70e-01 120 chr2L:8071693-8071813 9.55e-01 120 chr3L:12504147-12504267 1.14e-01 120 chr2L:8528509-8528629 5.45e-01 120 chr3L:10745731-10745851 7.54e-01 120 chr3L:9461738-9461858 1.75e-03 35_[+1(1.31e-05)]_77 chr2R:21018388-21018508 4.75e-02 72_[+3(1.35e-05)]_40 chr3R:16573888-16574008 6.86e-01 120 chr3L:20771241-20771361 9.86e-01 120 chr3L:20000369-20000489 6.57e-04 84_[+1(3.00e-06)]_28 chrX:17473405-17473525 2.82e-01 120 chr3R:19627991-19628111 5.01e-01 120 chr2L:19517452-19517572 7.13e-04 96_[+1(4.99e-06)]_16 chr4:1064389-1064509 8.36e-02 43_[+5(6.77e-05)]_69 chr3R:25754965-25755085 9.75e-01 120 chr3R:26937574-26937694 9.82e-02 120 chr2R:18883659-18883779 9.79e-01 120 chr3L:6807641-6807761 9.76e-01 120 chr3L:3288544-3288664 2.48e-04 95_[+3(2.19e-05)]_17 chr3L:8029471-8029591 5.17e-02 120 chrX:19352983-19353103 8.52e-03 58_[+5(2.72e-05)]_54 chr3R:26105974-26106094 8.79e-01 120 chr2R:24293571-24293691 3.69e-03 120 chr3L:19674438-19674558 3.67e-01 24_[+5(6.77e-05)]_88 chr2R:23180951-23181071 1.28e-02 109_[+2(7.08e-06)]_3 chr3R:31744159-31744279 2.58e-03 42_[+2(1.22e-05)]_70 chr3L:1534238-1534358 8.59e-02 120 chr3R:14077147-14077267 5.01e-01 120 chr3R:21420005-21420125 4.79e-01 120 chr2R:20641468-20641588 8.29e-06 62_[+2(4.03e-06)]_10_[+3(1.98e-05)]_\ 32 chr3R:22494738-22494858 1.33e-01 120 chr2L:21619216-21619336 3.84e-04 30_[+4(2.96e-06)]_82 chr3R:23181083-23181203 9.99e-01 120 chr2R:2567065-2567185 3.12e-02 120 chr3L:8024972-8025092 7.96e-04 57_[+5(2.72e-05)]_55 chr3R:27937878-27937998 5.80e-02 120 chr3L:797034-797154 4.29e-01 120 chr2L:18505721-18505841 1.41e-04 56_[+5(4.04e-05)]_42_[+4(8.93e-05)]_\ 6 chr3L:8445086-8445206 5.94e-01 120 chr2L:7266088-7266208 9.03e-01 120 chr3R:30734702-30734822 1.86e-01 7_[+5(2.72e-05)]_105 chr3R:17231670-17231790 1.45e-02 120 chr2L:2494651-2494771 2.09e-01 120 chr3L:12501417-12501537 3.61e-01 120 chr3R:31169095-31169215 3.23e-01 120 chr3L:13197604-13197724 5.07e-02 120 chrX:7571334-7571454 9.92e-01 120 chr3L:1151812-1151932 3.68e-01 120 chr3R:18804682-18804802 8.85e-01 120 chr2L:9564696-9564816 4.03e-01 120 chrX:5966013-5966133 1.00e+00 120 chr3L:4603527-4603647 2.72e-01 120 chr2R:20257422-20257542 9.87e-01 120 chr2L:1428401-1428521 8.84e-01 120 chr2L:295024-295144 2.61e-01 120 chr3L:11993135-11993255 1.19e-01 120 chr3L:13411164-13411284 8.28e-02 120 chrX:2011764-2011884 6.31e-01 120 chr2L:4224261-4224381 6.73e-01 120 chr3L:1216585-1216705 2.70e-01 120 chrX:9352822-9352942 9.90e-01 120 chr2R:7878994-7879114 3.44e-01 120 chrX:15591930-15592050 9.91e-01 120 chr3L:22163854-22163974 7.97e-04 98_[+4(8.01e-06)]_14 chr3L:16710319-16710439 3.99e-01 120 chr2R:23574924-23575044 9.76e-02 120 chr2R:20906684-20906804 9.64e-04 42_[+4(7.68e-05)]_19_[+3(2.19e-05)]_\ 43 chr2L:15061508-15061628 9.33e-01 120 chr3L:12336385-12336505 1.41e-01 120 chr3R:16209226-16209346 3.36e-01 120 chr3R:8171671-8171791 3.02e-02 101_[+5(2.72e-05)]_11 chr3L:9505482-9505602 8.65e-01 120 chr3L:772302-772422 6.91e-01 120 chr3L:12271337-12271457 4.88e-03 6_[+1(1.71e-05)]_106 chr3L:13189404-13189524 9.32e-01 120 chr2R:21503271-21503391 3.12e-01 120 chr3R:8354565-8354685 9.93e-01 120 chr2L:5520093-5520213 4.62e-02 120 chr3L:16544403-16544523 9.08e-01 120 chrX:12242524-12242644 3.43e-01 120 chr3R:20588524-20588644 6.23e-01 120 chr3L:10206361-10206481 9.91e-01 120 chr3R:27138153-27138273 5.70e-01 120 chrX:8125240-8125360 1.05e-03 25_[+3(7.17e-06)]_87 chr3R:13999692-13999812 7.75e-01 120 chrX:11660606-11660726 1.45e-02 120 chr2L:12351073-12351193 9.55e-02 100_[+5(4.04e-05)]_12 chr2L:12002938-12003058 3.12e-01 120 chr3L:16571564-16571684 7.70e-02 120 chr2R:21060663-21060783 7.03e-01 120 chrX:3968800-3968920 4.21e-02 120 chr3L:18349391-18349511 9.88e-01 120 chr2R:11639760-11639880 4.03e-01 120 chr3L:14335913-14336033 4.61e-01 120 chr3R:21350114-21350234 5.64e-02 105_[+3(3.12e-05)]_7 chr3R:5998379-5998499 5.84e-01 120 chr3R:19877625-19877745 7.14e-01 120 chr3L:13923485-13923605 9.32e-01 120 chr3L:14999734-14999854 4.75e-03 30_[+1(3.00e-06)]_82 chr2R:9109748-9109868 9.76e-01 120 chr2L:13073886-13074006 3.20e-04 [+4(3.06e-05)]_1_[+1(1.31e-05)]_103 chr3L:4254406-4254526 9.94e-01 120 chr3L:8629093-8629213 9.67e-01 120 chr3R:21993049-21993169 9.02e-01 120 chr2R:14909956-14910076 8.89e-01 120 chr2R:15477991-15478111 9.20e-01 120 chr3R:20008798-20008918 5.77e-01 120 chr3R:18242155-18242275 9.53e-01 120 chr2L:6907812-6907932 6.29e-02 120 chrX:13644172-13644292 7.58e-01 120 chr2R:14645085-14645205 1.24e-02 59_[+1(1.05e-05)]_53 chr3L:11334176-11334296 3.82e-02 109_[+5(4.04e-05)]_3 chr3R:8954950-8955070 2.24e-02 1_[+3(7.17e-06)]_111 chr3R:5636894-5637014 6.55e-01 120 chr3R:19031262-19031382 2.41e-03 23_[+1(5.99e-06)]_89 chr3R:29522340-29522460 8.96e-02 110_[+5(4.04e-05)]_2 chrX:5639241-5639361 2.17e-02 93_[+5(2.72e-05)]_19 chr2R:8914053-8914173 4.75e-03 12_[+4(3.97e-06)]_100 chr3L:4607845-4607965 4.19e-01 120 chrX:9137302-9137422 2.08e-01 120 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