******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10631.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:7971504-7971624 1.0000 120 chr2R:14076213-14076333 1.0000 120 chr2L:14529436-14529556 1.0000 120 chr2R:21854579-21854699 1.0000 120 chr3L:18079622-18079742 1.0000 120 chr3L:9209174-9209294 1.0000 120 chr2L:5288358-5288478 1.0000 120 chr3L:5128352-5128472 1.0000 120 chr2L:11966197-11966317 1.0000 120 chrX:5924507-5924627 1.0000 120 chr3L:5941266-5941386 1.0000 120 chr3L:18079824-18079944 1.0000 120 chr3L:7611370-7611490 1.0000 120 chr3R:10533289-10533409 1.0000 120 chr2R:20166308-20166428 1.0000 120 chr3L:16174908-16175028 1.0000 120 chr3L:4731826-4731946 1.0000 120 chr2L:646659-646779 1.0000 120 chr3R:8958447-8958567 1.0000 120 chr2L:16590821-16590941 1.0000 120 chr2R:14082354-14082474 1.0000 120 chrX:7179411-7179531 1.0000 120 chr3R:18469599-18469719 1.0000 120 chr3L:21253071-21253191 1.0000 120 chr3L:18243388-18243508 1.0000 120 chr2L:13146443-13146563 1.0000 120 chr2R:21470557-21470677 1.0000 120 chr2R:21550568-21550688 1.0000 120 chr3R:18485404-18485524 1.0000 120 chr3R:30833226-30833346 1.0000 120 chr2L:1387911-1388031 1.0000 120 chr2L:4028139-4028259 1.0000 120 chr2L:20335066-20335186 1.0000 120 chrX:17493765-17493885 1.0000 120 chr3R:14275656-14275776 1.0000 120 chr3R:29280845-29280965 1.0000 120 chr3R:28852075-28852195 1.0000 120 chr2L:2432941-2433061 1.0000 120 chr2R:18907169-18907289 1.0000 120 chr3L:15180937-15181057 1.0000 120 chr3L:19055145-19055265 1.0000 120 chr2L:18468170-18468290 1.0000 120 chr3L:9745526-9745646 1.0000 120 chr3L:12915466-12915586 1.0000 120 chr3L:21721015-21721135 1.0000 120 chr2R:20110876-20110996 1.0000 120 chr3L:2386554-2386674 1.0000 120 chr3L:10923118-10923238 1.0000 120 chr3R:19255436-19255556 1.0000 120 chr3L:3513132-3513252 1.0000 120 chr3R:22137168-22137288 1.0000 120 chr2L:1459492-1459612 1.0000 120 chr3R:26831984-26832104 1.0000 120 chr3R:22184204-22184324 1.0000 120 chr3L:16218107-16218227 1.0000 120 chr3R:31944348-31944468 1.0000 120 chr3L:4346517-4346637 1.0000 120 chr2R:15740770-15740890 1.0000 120 chr3R:8847390-8847510 1.0000 120 chr3R:26019378-26019498 1.0000 120 chr3L:3073619-3073739 1.0000 120 chr3R:4687351-4687471 1.0000 120 chr3L:3444333-3444453 1.0000 120 chr3L:5633711-5633831 1.0000 120 chrX:18800292-18800412 1.0000 120 chr3R:29091723-29091843 1.0000 120 chr3L:21224411-21224531 1.0000 120 chr3R:10531880-10532000 1.0000 120 chr3L:18078842-18078962 1.0000 120 chr3L:15005843-15005963 1.0000 120 chr3L:17577086-17577206 1.0000 120 chr3L:10757057-10757177 1.0000 120 chrX:8839473-8839593 1.0000 120 chr3L:12058602-12058722 1.0000 120 chrX:5020145-5020265 1.0000 120 chr2R:5496204-5496324 1.0000 120 chrX:8215643-8215763 1.0000 120 chrX:8196317-8196437 1.0000 120 chr3R:24261735-24261855 1.0000 120 chr2R:23761527-23761647 1.0000 120 chr3R:13846079-13846199 1.0000 120 chr2L:11399653-11399773 1.0000 120 chrX:342603-342723 1.0000 120 chr3L:13178323-13178443 1.0000 120 chr2L:11074118-11074238 1.0000 120 chr3L:20914505-20914625 1.0000 120 chr3R:16210904-16211024 1.0000 120 chr3R:31700366-31700486 1.0000 120 chr3R:13808009-13808129 1.0000 120 chr3R:30259743-30259863 1.0000 120 chr3R:14421902-14422022 1.0000 120 chr3L:8881874-8881994 1.0000 120 chr3R:18481156-18481276 1.0000 120 chrX:16873197-16873317 1.0000 120 chr3L:12915666-12915786 1.0000 120 chr3R:21649561-21649681 1.0000 120 chr2L:21005617-21005737 1.0000 120 chrX:2455441-2455561 1.0000 120 chr2L:18348740-18348860 1.0000 120 chr3R:21935341-21935461 1.0000 120 chr3L:10697083-10697203 1.0000 120 chr2R:21569741-21569861 1.0000 120 chr2L:11052512-11052632 1.0000 120 chr3R:31706248-31706368 1.0000 120 chr2L:2168678-2168798 1.0000 120 chr3R:19070619-19070739 1.0000 120 chr3R:27179101-27179221 1.0000 120 chr3L:20635721-20635841 1.0000 120 chr3L:20989033-20989153 1.0000 120 chr3R:19074346-19074466 1.0000 120 chr2R:18926590-18926710 1.0000 120 chrX:13245908-13246028 1.0000 120 chr2L:1409799-1409919 1.0000 120 chr2L:4071707-4071827 1.0000 120 chr2R:14969723-14969843 1.0000 120 chr2L:14236274-14236394 1.0000 120 chr3L:15174257-15174377 1.0000 120 chrX:18540394-18540514 1.0000 120 chr2L:16687980-16688100 1.0000 120 chr3L:15264794-15264914 1.0000 120 chr3R:10455032-10455152 1.0000 120 chr2L:7424377-7424497 1.0000 120 chrX:11658570-11658690 1.0000 120 chr2L:16591504-16591624 1.0000 120 chr3R:29300214-29300334 1.0000 120 chr3L:15240842-15240962 1.0000 120 chr3L:6458804-6458924 1.0000 120 chr2R:23306130-23306250 1.0000 120 chr3R:31723351-31723471 1.0000 120 chr2R:8322807-8322927 1.0000 120 chr3R:16119595-16119715 1.0000 120 chr2L:20371563-20371683 1.0000 120 chr2L:16594021-16594141 1.0000 120 chr3L:13107469-13107589 1.0000 120 chr2L:15392477-15392597 1.0000 120 chr2R:11183242-11183362 1.0000 120 chr2L:18482235-18482355 1.0000 120 chr3R:6954714-6954834 1.0000 120 chr2L:3582828-3582948 1.0000 120 chr3L:10913331-10913451 1.0000 120 chr2R:21846120-21846240 1.0000 120 chr3L:9567009-9567129 1.0000 120 chr3R:20284669-20284789 1.0000 120 chr2L:21263928-21264048 1.0000 120 chr2L:9447921-9448041 1.0000 120 chr2R:16812920-16813040 1.0000 120 chr2L:8271095-8271215 1.0000 120 chr3R:14007683-14007803 1.0000 120 chr3L:4619977-4620097 1.0000 120 chr3L:10562357-10562477 1.0000 120 chr3R:6102584-6102704 1.0000 120 chr2R:18343060-18343180 1.0000 120 chr3L:17010610-17010730 1.0000 120 chr2L:7071948-7072068 1.0000 120 chr3R:8922967-8923087 1.0000 120 chr2L:7897361-7897481 1.0000 120 chr3R:31689841-31689961 1.0000 120 chr2L:21006695-21006815 1.0000 120 chr2L:7899320-7899440 1.0000 120 chr3R:30843207-30843327 1.0000 120 chr3L:16752503-16752623 1.0000 120 chr2R:17811097-17811217 1.0000 120 chr3L:13213154-13213274 1.0000 120 chr3L:787740-787860 1.0000 120 chr3L:4722043-4722163 1.0000 120 chr3R:31505290-31505410 1.0000 120 chr3R:9966263-9966383 1.0000 120 chr2L:2162801-2162921 1.0000 120 chr3R:7651120-7651240 1.0000 120 chr3L:6085347-6085467 1.0000 120 chr2R:16836429-16836549 1.0000 120 chr3R:22324856-22324976 1.0000 120 chr3R:17202449-17202569 1.0000 120 chr3L:11447176-11447296 1.0000 120 chr2L:11069627-11069747 1.0000 120 chr3L:4708025-4708145 1.0000 120 chr3L:14463969-14464089 1.0000 120 chr2L:13572214-13572334 1.0000 120 chrX:18272445-18272565 1.0000 120 chr3R:14449441-14449561 1.0000 120 chr3R:9594060-9594180 1.0000 120 chrX:10105807-10105927 1.0000 120 chrX:12507702-12507822 1.0000 120 chr3R:5042581-5042701 1.0000 120 chr2R:11033707-11033827 1.0000 120 chrX:7544018-7544138 1.0000 120 chr3R:31768377-31768497 1.0000 120 chr2L:2750716-2750836 1.0000 120 chrX:17113360-17113480 1.0000 120 chr2R:18894917-18895037 1.0000 120 chr3L:736087-736207 1.0000 120 chrX:17542868-17542988 1.0000 120 chr3L:16762375-16762495 1.0000 120 chr2L:7146054-7146174 1.0000 120 chr2L:16503022-16503142 1.0000 120 chr2R:14313685-14313805 1.0000 120 chr3L:1084460-1084580 1.0000 120 chr2L:7949901-7950021 1.0000 120 chr3R:21830515-21830635 1.0000 120 chr3R:21894079-21894199 1.0000 120 chr3L:15762912-15763032 1.0000 120 chr3R:14390593-14390713 1.0000 120 chr2L:608267-608387 1.0000 120 chrX:8212224-8212344 1.0000 120 chr2R:12012815-12012935 1.0000 120 chr2L:18003693-18003813 1.0000 120 chr3L:11414580-11414700 1.0000 120 chr2L:19905311-19905431 1.0000 120 chr3R:31329990-31330110 1.0000 120 chr2L:5290043-5290163 1.0000 120 chrX:7177265-7177385 1.0000 120 chr2L:18352974-18353094 1.0000 120 chrX:9460761-9460881 1.0000 120 chr2L:19142611-19142731 1.0000 120 chr3R:7646285-7646405 1.0000 120 chrX:12663120-12663240 1.0000 120 chr2L:609618-609738 1.0000 120 chr3R:22185824-22185944 1.0000 120 chr3L:14610618-14610738 1.0000 120 chr3L:4383288-4383408 1.0000 120 chr3L:21685871-21685991 1.0000 120 chr2R:18257003-18257123 1.0000 120 chr3L:6266489-6266609 1.0000 120 chr2L:18003147-18003267 1.0000 120 chr3R:14847349-14847469 1.0000 120 chr2R:22570646-22570766 1.0000 120 chr3L:19315014-19315134 1.0000 120 chr2R:12733009-12733129 1.0000 120 chrX:4970004-4970124 1.0000 120 chr3L:7592252-7592372 1.0000 120 chr3R:31336428-31336548 1.0000 120 chr3L:10740746-10740866 1.0000 120 chr3R:5120923-5121043 1.0000 120 chr2R:19420582-19420702 1.0000 120 chr3L:2471156-2471276 1.0000 120 chr3R:7171859-7171979 1.0000 120 chr2R:7147417-7147537 1.0000 120 chr2L:7611663-7611783 1.0000 120 chr3R:9963285-9963405 1.0000 120 chrX:14074273-14074393 1.0000 120 chrX:5926835-5926955 1.0000 120 chr3L:10931589-10931709 1.0000 120 chr2R:14126324-14126444 1.0000 120 chr3R:30076227-30076347 1.0000 120 chr3R:13861965-13862085 1.0000 120 chr2L:19325553-19325673 1.0000 120 chr2L:7323104-7323224 1.0000 120 chrX:16318961-16319081 1.0000 120 chrX:7491068-7491188 1.0000 120 chr2R:11176235-11176355 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG10631/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10631.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.351 C 0.147 G 0.147 T 0.355 Background letter frequencies (from file dataset with add-one prior applied): A 0.351 C 0.147 G 0.147 T 0.355 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GYACSGGG MEME-1 width = 8 sites = 8 llr = 90 E-value = 3.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYACSGGG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:1:3: pos.-specific C :5:a4::: probability G a1::5a8a matrix T :4:::::: bits 2.8 * * * * 2.5 * * * * 2.2 * * * * 1.9 * * * * Relative 1.7 * * *** Entropy 1.4 * ** *** (16.3 bits) 1.1 * ****** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCACGGGG consensus T C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYACSGGG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7899320-7899440 111 5.21e-07 CAGGGGTGTG GCACGGGG GT chr3R:22184204-22184324 44 2.30e-06 GCAATGTTAA GTACGGGG TTTTTATTTA chr3R:20284669-20284789 50 2.82e-06 TTCTGCACAT GGACGGGG TTTGGGCCTA chr3R:30076227-30076347 64 4.08e-06 Tattatctga gtaccggg tatctgatag chrX:17493765-17493885 104 4.08e-06 caatagccga gtaccggg tatcggtta chr3L:6458804-6458924 13 5.84e-06 TTCTGTATGT GCACGGAG AAAAAAATGC chrX:17542868-17542988 28 8.33e-06 ATCTCAAAAT GCACAGGG CAAAAAAAAA chr3R:30843207-30843327 8 8.33e-06 GCATCCG GCACCGAG ACTTAGAATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYACSGGG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7899320-7899440 5.2e-07 110_[+1]_2 chr3R:22184204-22184324 2.3e-06 43_[+1]_69 chr3R:20284669-20284789 2.8e-06 49_[+1]_63 chr3R:30076227-30076347 4.1e-06 63_[+1]_49 chrX:17493765-17493885 4.1e-06 103_[+1]_9 chr3L:6458804-6458924 5.8e-06 12_[+1]_100 chrX:17542868-17542988 8.3e-06 27_[+1]_85 chr3R:30843207-30843327 8.3e-06 7_[+1]_105 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYACSGGG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYACSGGG width=8 seqs=8 chr2L:7899320-7899440 ( 111) GCACGGGG 1 chr3R:22184204-22184324 ( 44) GTACGGGG 1 chr3R:20284669-20284789 ( 50) GGACGGGG 1 chr3R:30076227-30076347 ( 64) GTACCGGG 1 chrX:17493765-17493885 ( 104) GTACCGGG 1 chr3L:6458804-6458924 ( 13) GCACGGAG 1 chrX:17542868-17542988 ( 28) GCACAGGG 1 chr3R:30843207-30843327 ( 8) GCACCGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYACSGGG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 3.8e+003 -965 -965 277 -965 -965 176 -23 8 151 -965 -965 -965 -965 276 -965 -965 -149 135 177 -965 -965 -965 277 -965 -49 -965 235 -965 -965 -965 277 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYACSGGG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.8e+003 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.125000 0.375000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.375000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYACSGGG MEME-1 regular expression -------------------------------------------------------------------------------- G[CT]AC[GC]G[GA]G -------------------------------------------------------------------------------- Time 7.51 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCCCSGC MEME-2 width = 8 sites = 2 llr = 29 E-value = 1.4e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCCCSGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :aaaa5:a probability G a::::5a: matrix T :::::::: bits 2.8 ***** ** 2.5 ***** ** 2.2 ***** ** 1.9 ***** ** Relative 1.7 ******** Entropy 1.4 ******** (21.1 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GCCCCCGC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCSGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:1084460-1084580 12 4.36e-07 ATAGTTTACT GCCCCGGC TCAGCGGTAC chr3R:29280845-29280965 80 4.36e-07 GAGATAACAA GCCCCCGC CTTAAAAATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCSGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:1084460-1084580 4.4e-07 11_[+2]_101 chr3R:29280845-29280965 4.4e-07 79_[+2]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCSGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCCCSGC width=8 seqs=2 chr3L:1084460-1084580 ( 12) GCCCCGGC 1 chr3R:29280845-29280965 ( 80) GCCCCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCSGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.4e+004 -765 -765 276 -765 -765 276 -765 -765 -765 276 -765 -765 -765 276 -765 -765 -765 276 -765 -765 -765 176 176 -765 -765 -765 276 -765 -765 276 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCSGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.4e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCCCSGC MEME-2 regular expression -------------------------------------------------------------------------------- GCCCC[CG]GC -------------------------------------------------------------------------------- Time 13.81 secs. ******************************************************************************** ******************************************************************************** MOTIF TCTCAGTG MEME-3 width = 8 sites = 8 llr = 90 E-value = 3.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCTCAGTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C :a:a:::: probability G 3:1::a:a matrix T 8:9:::a: bits 2.8 * * * * 2.5 * * * * 2.2 * * * * 1.9 * * * * Relative 1.7 * * * * Entropy 1.4 * ***** (16.2 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel TCTCAGTG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14126324-14126444 77 7.33e-06 TTACATTTTT TCTCAGTG TAAATATAGA chr3L:4619977-4620097 111 7.33e-06 CACAAATTTC TCTCAGTG CT chr3L:10913331-10913451 80 7.33e-06 gtataagtat TCTCAGTG ACGTTTGCCA chr2L:18468170-18468290 99 7.33e-06 AATATTGTTC TCTCAGTG TAAATGTTTA chr3R:8958447-8958567 109 7.33e-06 ACATTCATTC TCTCAGTG TAGG chr3L:18079824-18079944 50 7.33e-06 TAGCATATTT TCTCAGTG CACCCACTAG chr2L:8271095-8271215 89 1.04e-05 AAAGTATTTC GCTCAGTG CAAGATTCGA chr3L:11447176-11447296 97 1.47e-05 CACGTTTTCG GCGCAGTG CGTTTCGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14126324-14126444 7.3e-06 76_[+3]_36 chr3L:4619977-4620097 7.3e-06 110_[+3]_2 chr3L:10913331-10913451 7.3e-06 79_[+3]_33 chr2L:18468170-18468290 7.3e-06 98_[+3]_14 chr3R:8958447-8958567 7.3e-06 108_[+3]_4 chr3L:18079824-18079944 7.3e-06 49_[+3]_63 chr2L:8271095-8271215 1e-05 88_[+3]_24 chr3L:11447176-11447296 1.5e-05 96_[+3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCTCAGTG width=8 seqs=8 chr2R:14126324-14126444 ( 77) TCTCAGTG 1 chr3L:4619977-4620097 ( 111) TCTCAGTG 1 chr3L:10913331-10913451 ( 80) TCTCAGTG 1 chr2L:18468170-18468290 ( 99) TCTCAGTG 1 chr3R:8958447-8958567 ( 109) TCTCAGTG 1 chr3L:18079824-18079944 ( 50) TCTCAGTG 1 chr2L:8271095-8271215 ( 89) GCTCAGTG 1 chr3L:11447176-11447296 ( 97) GCGCAGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 3.2e+004 -965 -965 77 108 -965 276 -965 -965 -965 -965 -23 130 -965 276 -965 -965 151 -965 -965 -965 -965 -965 277 -965 -965 -965 -965 149 -965 -965 277 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.2e+004 0.000000 0.000000 0.250000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.125000 0.875000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCTCAGTG MEME-3 regular expression -------------------------------------------------------------------------------- [TG]CTCAGTG -------------------------------------------------------------------------------- Time 20.12 secs. ******************************************************************************** ******************************************************************************** MOTIF AKCTGGCA MEME-4 width = 8 sites = 8 llr = 89 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AKCTGGCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A a::::::a pos.-specific C ::a::3a: probability G :6::a8:: matrix T :4:a:::: bits 2.8 * * * 2.5 * * * 2.2 * * * 1.9 * *** Relative 1.7 * *** Entropy 1.4 ******** (16.1 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel AGCTGGCA consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:4619977-4620097 74 3.00e-06 TCAGCATAAA AGCTGGCA ATTGAATTGA chr3L:3444333-3444453 1 3.00e-06 . AGCTGGCA GTGTGCACTC chr3R:29280845-29280965 53 3.00e-06 TAGCTTGTAT AGCTGGCA GTGTATGCTG chrX:7491068-7491188 65 6.00e-06 ACAGCTAAAA AGCTGCCA AAAGTGGGGT chr2L:16687980-16688100 87 6.00e-06 TAGTCTCAAA AGCTGCCA CTTACAGAAT chr2R:11183242-11183362 111 1.33e-05 ATACTTAAGT ATCTGGCA TT chr3L:18078842-18078962 61 1.33e-05 GATTTTCAAC ATCTGGCA ACTTCCTTAC chr3R:26831984-26832104 72 1.33e-05 CTAACTCGTC ATCTGGCA ATGTGAAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:4619977-4620097 3e-06 73_[+4]_39 chr3L:3444333-3444453 3e-06 [+4]_112 chr3R:29280845-29280965 3e-06 52_[+4]_60 chrX:7491068-7491188 6e-06 64_[+4]_48 chr2L:16687980-16688100 6e-06 86_[+4]_26 chr2R:11183242-11183362 1.3e-05 110_[+4]_2 chr3L:18078842-18078962 1.3e-05 60_[+4]_52 chr3R:26831984-26832104 1.3e-05 71_[+4]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AKCTGGCA width=8 seqs=8 chr3L:4619977-4620097 ( 74) AGCTGGCA 1 chr3L:3444333-3444453 ( 1) AGCTGGCA 1 chr3R:29280845-29280965 ( 53) AGCTGGCA 1 chrX:7491068-7491188 ( 65) AGCTGCCA 1 chr2L:16687980-16688100 ( 87) AGCTGCCA 1 chr2R:11183242-11183362 ( 111) ATCTGGCA 1 chr3L:18078842-18078962 ( 61) ATCTGGCA 1 chr3R:26831984-26832104 ( 72) ATCTGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 2.1e+004 151 -965 -965 -965 -965 -965 209 8 -965 276 -965 -965 -965 -965 -965 149 -965 -965 277 -965 -965 76 235 -965 -965 276 -965 -965 151 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.1e+004 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.625000 0.375000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.250000 0.750000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AKCTGGCA MEME-4 regular expression -------------------------------------------------------------------------------- A[GT]CTG[GC]CA -------------------------------------------------------------------------------- Time 26.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGCTGCG MEME-5 width = 8 sites = 2 llr = 27 E-value = 1.3e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGCTGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::a::a: probability G a:a::a:a matrix T :a::a::: bits 2.8 * ** *** 2.5 * ** *** 2.2 * ** *** 1.9 * ** *** Relative 1.7 * ** *** Entropy 1.4 ******** (19.6 bits) 1.1 ******** 0.8 ******** 0.6 ******** 0.3 ******** 0.0 -------- Multilevel GTGCTGCG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14847349-14847469 12 1.27e-06 CTCTTTTTGG GTGCTGCG AGCTCAACTA chrX:13245908-13246028 21 1.27e-06 AAAACTGGGA GTGCTGCG TATGTTTGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14847349-14847469 1.3e-06 11_[+5]_101 chrX:13245908-13246028 1.3e-06 20_[+5]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGCTGCG width=8 seqs=2 chr3R:14847349-14847469 ( 12) GTGCTGCG 1 chrX:13245908-13246028 ( 21) GTGCTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.3e+005 -765 -765 276 -765 -765 -765 -765 149 -765 -765 276 -765 -765 276 -765 -765 -765 -765 -765 149 -765 -765 276 -765 -765 276 -765 -765 -765 -765 276 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+005 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGCTGCG MEME-5 regular expression -------------------------------------------------------------------------------- GTGCTGCG -------------------------------------------------------------------------------- Time 32.65 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7971504-7971624 9.96e-01 120 chr2R:14076213-14076333 5.45e-01 120 chr2L:14529436-14529556 6.16e-01 120 chr2R:21854579-21854699 7.79e-01 120 chr3L:18079622-18079742 9.77e-01 120 chr3L:9209174-9209294 7.52e-01 120 chr2L:5288358-5288478 1.72e-01 120 chr3L:5128352-5128472 9.98e-01 120 chr2L:11966197-11966317 8.09e-01 120 chrX:5924507-5924627 9.21e-01 120 chr3L:5941266-5941386 4.70e-01 120 chr3L:18079824-18079944 2.23e-04 49_[+3(7.33e-06)]_63 chr3L:7611370-7611490 4.65e-01 120 chr3R:10533289-10533409 5.16e-01 120 chr2R:20166308-20166428 6.23e-01 120 chr3L:16174908-16175028 9.23e-01 120 chr3L:4731826-4731946 5.74e-01 120 chr2L:646659-646779 9.91e-01 120 chr3R:8958447-8958567 2.31e-02 108_[+3(7.33e-06)]_4 chr2L:16590821-16590941 9.59e-01 120 chr2R:14082354-14082474 9.89e-01 120 chrX:7179411-7179531 6.99e-01 120 chr3R:18469599-18469719 2.33e-01 112_[+3(7.75e-05)] chr3L:21253071-21253191 5.47e-01 120 chr3L:18243388-18243508 1.97e-02 108_[+5(5.44e-05)]_4 chr2L:13146443-13146563 9.90e-01 120 chr2R:21470557-21470677 5.48e-01 120 chr2R:21550568-21550688 4.60e-01 120 chr3R:18485404-18485524 4.72e-02 120 chr3R:30833226-30833346 9.71e-01 120 chr2L:1387911-1388031 5.33e-01 120 chr2L:4028139-4028259 2.08e-01 120 chr2L:20335066-20335186 8.52e-01 120 chrX:17493765-17493885 4.52e-03 103_[+1(4.08e-06)]_9 chr3R:14275656-14275776 5.32e-02 120 chr3R:29280845-29280965 8.26e-07 52_[+4(3.00e-06)]_19_[+2(4.36e-07)]_\ 33 chr3R:28852075-28852195 8.13e-01 120 chr2L:2432941-2433061 4.31e-02 120 chr2R:18907169-18907289 6.23e-01 120 chr3L:15180937-15181057 5.93e-01 120 chr3L:19055145-19055265 3.73e-01 120 chr2L:18468170-18468290 2.51e-02 98_[+3(7.33e-06)]_14 chr3L:9745526-9745646 8.42e-01 120 chr3L:12915466-12915586 5.07e-02 120 chr3L:21721015-21721135 3.83e-01 120 chr2R:20110876-20110996 2.55e-01 120 chr3L:2386554-2386674 9.21e-01 120 chr3L:10923118-10923238 7.30e-01 120 chr3R:19255436-19255556 1.07e-01 76_[+3(3.52e-05)]_36 chr3L:3513132-3513252 7.63e-01 120 chr3R:22137168-22137288 9.96e-01 120 chr2L:1459492-1459612 6.57e-01 120 chr3R:26831984-26832104 1.01e-01 71_[+4(1.33e-05)]_41 chr3R:22184204-22184324 1.38e-03 43_[+1(2.30e-06)]_69 chr3L:16218107-16218227 9.98e-01 120 chr3R:31944348-31944468 7.40e-01 120 chr3L:4346517-4346637 4.86e-01 120 chr2R:15740770-15740890 5.73e-02 120 chr3R:8847390-8847510 1.19e-01 120 chr3R:26019378-26019498 6.77e-01 120 chr3L:3073619-3073739 1.74e-01 59_[+3(2.49e-05)]_53 chr3R:4687351-4687471 7.16e-01 120 chr3L:3444333-3444453 3.99e-03 [+4(3.00e-06)]_112 chr3L:5633711-5633831 3.48e-01 120 chrX:18800292-18800412 1.12e-01 120 chr3R:29091723-29091843 1.16e-01 120 chr3L:21224411-21224531 9.64e-01 120 chr3R:10531880-10532000 2.19e-01 120 chr3L:18078842-18078962 1.33e-02 60_[+4(1.33e-05)]_52 chr3L:15005843-15005963 6.90e-01 120 chr3L:17577086-17577206 5.88e-01 120 chr3L:10757057-10757177 5.92e-01 120 chrX:8839473-8839593 9.72e-01 120 chr3L:12058602-12058722 9.13e-01 120 chrX:5020145-5020265 9.95e-01 120 chr2R:5496204-5496324 8.56e-01 120 chrX:8215643-8215763 8.98e-01 120 chrX:8196317-8196437 9.26e-02 120 chr3R:24261735-24261855 2.53e-01 120 chr2R:23761527-23761647 1.43e-01 120 chr3R:13846079-13846199 9.78e-01 120 chr2L:11399653-11399773 6.83e-01 120 chrX:342603-342723 2.98e-01 120 chr3L:13178323-13178443 9.93e-01 120 chr2L:11074118-11074238 8.73e-01 120 chr3L:20914505-20914625 8.38e-01 120 chr3R:16210904-16211024 5.52e-01 120 chr3R:31700366-31700486 7.41e-01 120 chr3R:13808009-13808129 6.52e-01 120 chr3R:30259743-30259863 2.80e-01 120 chr3R:14421902-14422022 4.45e-01 120 chr3L:8881874-8881994 5.35e-01 120 chr3R:18481156-18481276 5.10e-01 120 chrX:16873197-16873317 5.69e-01 120 chr3L:12915666-12915786 2.00e-01 120 chr3R:21649561-21649681 1.90e-01 120 chr2L:21005617-21005737 9.99e-01 120 chrX:2455441-2455561 8.98e-01 120 chr2L:18348740-18348860 9.03e-01 120 chr3R:21935341-21935461 4.53e-01 120 chr3L:10697083-10697203 9.79e-01 120 chr2R:21569741-21569861 5.94e-01 120 chr2L:11052512-11052632 7.43e-01 120 chr3R:31706248-31706368 1.16e-01 120 chr2L:2168678-2168798 2.12e-01 120 chr3R:19070619-19070739 4.28e-01 120 chr3R:27179101-27179221 2.28e-01 120 chr3L:20635721-20635841 3.23e-01 120 chr3L:20989033-20989153 9.74e-01 120 chr3R:19074346-19074466 6.81e-01 120 chr2R:18926590-18926710 8.73e-01 120 chrX:13245908-13246028 3.81e-03 20_[+5(1.27e-06)]_92 chr2L:1409799-1409919 2.89e-01 120 chr2L:4071707-4071827 1.98e-01 120 chr2R:14969723-14969843 7.94e-01 120 chr2L:14236274-14236394 9.80e-01 120 chr3L:15174257-15174377 9.67e-01 120 chrX:18540394-18540514 1.00e+00 120 chr2L:16687980-16688100 2.34e-02 86_[+4(6.00e-06)]_26 chr3L:15264794-15264914 6.39e-01 120 chr3R:10455032-10455152 3.86e-01 120 chr2L:7424377-7424497 3.60e-01 120 chrX:11658570-11658690 1.28e-01 120 chr2L:16591504-16591624 9.97e-02 16_[+2(6.17e-05)]_96 chr3R:29300214-29300334 5.39e-03 71_[+5(5.02e-05)]_41 chr3L:15240842-15240962 9.85e-01 120 chr3L:6458804-6458924 1.58e-02 12_[+1(5.84e-06)]_100 chr2R:23306130-23306250 5.21e-01 120 chr3R:31723351-31723471 4.28e-02 47_[+4(6.16e-05)]_65 chr2R:8322807-8322927 6.28e-01 120 chr3R:16119595-16119715 9.45e-01 120 chr2L:20371563-20371683 6.74e-01 120 chr2L:16594021-16594141 2.48e-01 120 chr3L:13107469-13107589 5.65e-01 120 chr2L:15392477-15392597 7.73e-01 120 chr2R:11183242-11183362 8.86e-02 110_[+4(1.33e-05)]_2 chr2L:18482235-18482355 3.18e-01 120 chr3R:6954714-6954834 9.36e-02 120 chr2L:3582828-3582948 7.09e-01 120 chr3L:10913331-10913451 8.35e-02 79_[+3(7.33e-06)]_33 chr2R:21846120-21846240 8.70e-01 120 chr3L:9567009-9567129 8.61e-01 120 chr3R:20284669-20284789 2.78e-02 49_[+1(2.82e-06)]_63 chr2L:21263928-21264048 5.70e-01 120 chr2L:9447921-9448041 5.54e-01 120 chr2R:16812920-16813040 7.64e-01 120 chr2L:8271095-8271215 3.50e-03 88_[+3(1.04e-05)]_24 chr3R:14007683-14007803 7.14e-01 120 chr3L:4619977-4620097 3.29e-04 73_[+4(3.00e-06)]_29_[+3(7.33e-06)]_\ 2 chr3L:10562357-10562477 7.98e-01 120 chr3R:6102584-6102704 3.78e-01 120 chr2R:18343060-18343180 2.74e-01 120 chr3L:17010610-17010730 9.99e-01 120 chr2L:7071948-7072068 5.27e-01 120 chr3R:8922967-8923087 9.31e-02 120 chr2L:7897361-7897481 7.58e-01 120 chr3R:31689841-31689961 2.40e-01 120 chr2L:21006695-21006815 9.44e-01 120 chr2L:7899320-7899440 4.40e-04 97_[+1(8.33e-06)]_5_[+1(5.21e-07)]_\ 2 chr3R:30843207-30843327 1.83e-03 7_[+1(8.33e-06)]_105 chr3L:16752503-16752623 3.59e-01 120 chr2R:17811097-17811217 9.65e-01 120 chr3L:13213154-13213274 9.89e-01 120 chr3L:787740-787860 7.12e-01 120 chr3L:4722043-4722163 5.38e-01 120 chr3R:31505290-31505410 1.93e-02 120 chr3R:9966263-9966383 9.98e-01 120 chr2L:2162801-2162921 6.79e-01 120 chr3R:7651120-7651240 6.41e-01 120 chr3L:6085347-6085467 2.23e-01 120 chr2R:16836429-16836549 4.36e-02 120 chr3R:22324856-22324976 5.05e-01 120 chr3R:17202449-17202569 9.24e-01 120 chr3L:11447176-11447296 5.36e-03 96_[+3(1.47e-05)]_16 chr2L:11069627-11069747 9.97e-01 120 chr3L:4708025-4708145 1.03e-01 120 chr3L:14463969-14464089 9.98e-01 120 chr2L:13572214-13572334 1.00e+00 120 chrX:18272445-18272565 4.36e-01 120 chr3R:14449441-14449561 5.07e-01 120 chr3R:9594060-9594180 9.31e-01 120 chrX:10105807-10105927 4.95e-01 120 chrX:12507702-12507822 6.34e-01 120 chr3R:5042581-5042701 7.04e-01 120 chr2R:11033707-11033827 9.63e-01 120 chrX:7544018-7544138 7.00e-01 120 chr3R:31768377-31768497 4.69e-04 102_[+1(4.16e-05)]_10 chr2L:2750716-2750836 5.01e-02 34_[+1(7.39e-05)]_66_[+1(7.62e-05)]_\ 4 chrX:17113360-17113480 8.08e-01 120 chr2R:18894917-18895037 3.78e-01 120 chr3L:736087-736207 3.80e-01 120 chrX:17542868-17542988 4.17e-03 27_[+1(8.33e-06)]_85 chr3L:16762375-16762495 2.77e-01 120 chr2L:7146054-7146174 2.74e-01 120 chr2L:16503022-16503142 1.36e-01 120 chr2R:14313685-14313805 7.90e-01 120 chr3L:1084460-1084580 2.69e-05 11_[+2(4.36e-07)]_101 chr2L:7949901-7950021 3.34e-01 120 chr3R:21830515-21830635 5.49e-01 120 chr3R:21894079-21894199 9.86e-01 120 chr3L:15762912-15763032 5.42e-02 97_[+5(5.02e-05)]_15 chr3R:14390593-14390713 8.26e-01 120 chr2L:608267-608387 4.79e-01 120 chrX:8212224-8212344 3.19e-02 69_[+1(6.76e-05)]_43 chr2R:12012815-12012935 9.39e-01 120 chr2L:18003693-18003813 1.09e-02 70_[+4(4.72e-05)]_42 chr3L:11414580-11414700 2.29e-01 120 chr2L:19905311-19905431 3.25e-01 120 chr3R:31329990-31330110 8.42e-01 120 chr2L:5290043-5290163 9.91e-01 120 chrX:7177265-7177385 3.42e-01 120 chr2L:18352974-18353094 4.35e-01 120 chrX:9460761-9460881 1.35e-02 45_[+2(6.17e-05)]_67 chr2L:19142611-19142731 6.96e-01 120 chr3R:7646285-7646405 9.38e-01 120 chrX:12663120-12663240 1.32e-01 120 chr2L:609618-609738 2.02e-01 120 chr3R:22185824-22185944 4.98e-02 79_[+2(6.17e-05)]_33 chr3L:14610618-14610738 9.55e-01 120 chr3L:4383288-4383408 6.71e-01 120 chr3L:21685871-21685991 9.91e-01 120 chr2R:18257003-18257123 9.53e-01 120 chr3L:6266489-6266609 2.29e-02 120 chr2L:18003147-18003267 8.76e-01 120 chr3R:14847349-14847469 3.96e-03 11_[+5(1.27e-06)]_101 chr2R:22570646-22570766 7.98e-01 120 chr3L:19315014-19315134 7.05e-01 120 chr2R:12733009-12733129 5.09e-01 120 chrX:4970004-4970124 6.58e-01 120 chr3L:7592252-7592372 7.79e-01 120 chr3R:31336428-31336548 8.73e-01 120 chr3L:10740746-10740866 9.81e-01 120 chr3R:5120923-5121043 8.98e-02 120 chr2R:19420582-19420702 9.29e-01 120 chr3L:2471156-2471276 1.75e-01 120 chr3R:7171859-7171979 5.54e-01 120 chr2R:7147417-7147537 7.72e-01 120 chr2L:7611663-7611783 6.89e-01 120 chr3R:9963285-9963405 3.63e-01 120 chrX:14074273-14074393 5.67e-02 120 chrX:5926835-5926955 1.24e-01 120 chr3L:10931589-10931709 9.26e-01 120 chr2R:14126324-14126444 9.51e-04 76_[+3(7.33e-06)]_25_[+5(5.02e-05)]_\ 3 chr3R:30076227-30076347 4.58e-03 63_[+1(4.08e-06)]_49 chr3R:13861965-13862085 9.21e-01 120 chr2L:19325553-19325673 5.58e-01 120 chr2L:7323104-7323224 8.58e-01 120 chrX:16318961-16319081 3.04e-01 120 chrX:7491068-7491188 1.57e-02 64_[+4(6.00e-06)]_48 chr2R:11176235-11176355 8.45e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************