******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10565.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:22433026-22433146 1.0000 120 chr2R:17892972-17893092 1.0000 120 chr3R:17551222-17551342 1.0000 120 chr3R:20588582-20588702 1.0000 120 chr3L:20711553-20711673 1.0000 120 chr3L:9034413-9034533 1.0000 120 chr3R:19096349-19096469 1.0000 120 chr3L:8954780-8954900 1.0000 120 chr3R:13779274-13779394 1.0000 120 chr3L:3862584-3862704 1.0000 120 chr3L:11261054-11261174 1.0000 120 chr2L:10261144-10261264 1.0000 120 chr2L:3533236-3533356 1.0000 120 chr2R:8082781-8082901 1.0000 120 chr2R:22510864-22510984 1.0000 120 chr2R:20838019-20838139 1.0000 120 chr2L:8835017-8835137 1.0000 120 chr3L:19255203-19255323 1.0000 120 chr3L:20823523-20823643 1.0000 120 chrX:12583290-12583410 1.0000 120 chr3R:31395350-31395470 1.0000 120 chrX:18923631-18923751 1.0000 120 chr3R:21828367-21828487 1.0000 120 chr3R:31252717-31252837 1.0000 120 chr3R:31061481-31061601 1.0000 120 chr3L:11285201-11285321 1.0000 120 chr3L:9011883-9012003 1.0000 120 chrX:10362981-10363101 1.0000 120 chr2R:22411581-22411701 1.0000 120 chr2R:6984558-6984678 1.0000 120 chr3R:28329288-28329408 1.0000 120 chr3R:4886236-4886356 1.0000 120 chr3L:17242223-17242343 1.0000 120 chr2L:21846482-21846602 1.0000 120 chr3R:13999708-13999828 1.0000 120 chr3R:16448836-16448956 1.0000 120 chr2R:15848067-15848187 1.0000 120 chr2L:16656751-16656871 1.0000 120 chrX:8774192-8774312 1.0000 120 chr3L:17653585-17653705 1.0000 120 chr3R:5299129-5299249 1.0000 120 chr3R:14326901-14327021 1.0000 120 chr3L:11375400-11375520 1.0000 120 chrX:4446196-4446316 1.0000 120 chr2L:14047285-14047405 1.0000 120 chr3R:26963911-26964031 1.0000 120 chrX:7301587-7301707 1.0000 120 chr3R:5212357-5212477 1.0000 120 chr2R:22395926-22396046 1.0000 120 chr2L:18899392-18899512 1.0000 120 chr3L:18348752-18348872 1.0000 120 chr2L:2182821-2182941 1.0000 120 chrX:6599403-6599523 1.0000 120 chr3R:14714656-14714776 1.0000 120 chr2L:18653463-18653583 1.0000 120 chr2L:14556971-14557091 1.0000 120 chr2R:7773270-7773390 1.0000 120 chrX:18645796-18645916 1.0000 120 chr2R:14526448-14526568 1.0000 120 chr3R:11392925-11393045 1.0000 120 chr2L:2885618-2885738 1.0000 120 chr2L:6557459-6557579 1.0000 120 chr3L:6124764-6124884 1.0000 120 chrX:12202334-12202454 1.0000 120 chrX:11338414-11338534 1.0000 120 chr3L:7988951-7989071 1.0000 120 chr2L:3574092-3574212 1.0000 120 chr3R:12982613-12982733 1.0000 120 chr2L:8164359-8164479 1.0000 120 chr2L:7565075-7565195 1.0000 120 chr2R:17422082-17422202 1.0000 120 chr2R:11371181-11371301 1.0000 120 chr3L:16782465-16782585 1.0000 120 chr2R:19255994-19256114 1.0000 120 chr3L:13957236-13957356 1.0000 120 chr3R:25446280-25446400 1.0000 120 chr2L:20326445-20326565 1.0000 120 chr3R:4663201-4663321 1.0000 120 chr3R:4806535-4806655 1.0000 120 chr3L:11416878-11416998 1.0000 120 chr3L:11415496-11415616 1.0000 120 chrX:15043156-15043276 1.0000 120 chr2L:13515087-13515207 1.0000 120 chrX:14627579-14627699 1.0000 120 chr3L:10838542-10838662 1.0000 120 chrX:8656691-8656811 1.0000 120 chr3L:16026237-16026357 1.0000 120 chr3R:23658116-23658236 1.0000 120 chr2R:10230825-10230945 1.0000 120 chrX:9486940-9487060 1.0000 120 chr2R:10557713-10557833 1.0000 120 chr3R:29675462-29675582 1.0000 120 chr2L:10386493-10386613 1.0000 120 chr2R:20062803-20062923 1.0000 120 chr3R:15973039-15973159 1.0000 120 chr3R:16261025-16261145 1.0000 120 chr2L:14706336-14706456 1.0000 120 chr3R:27135909-27136029 1.0000 120 chr3R:22139233-22139353 1.0000 120 chrX:17509065-17509185 1.0000 120 chr3L:21652922-21653042 1.0000 120 chr2L:3588387-3588507 1.0000 120 chr3L:6182060-6182180 1.0000 120 chr3R:29567099-29567219 1.0000 120 chr3L:11422540-11422660 1.0000 120 chr2R:8251683-8251803 1.0000 120 chr2L:3803134-3803254 1.0000 120 chrX:18951594-18951714 1.0000 120 chr3L:11648512-11648632 1.0000 120 chr2L:481907-482027 1.0000 120 chr2L:856761-856881 1.0000 120 chr2R:7061801-7061921 1.0000 120 chr3L:12457396-12457516 1.0000 120 chr3L:7855954-7856074 1.0000 120 chr3R:25997234-25997354 1.0000 120 chr2L:5546620-5546740 1.0000 120 chr2L:7123810-7123930 1.0000 120 chr2L:19358308-19358428 1.0000 120 chr2R:23884913-23885033 1.0000 120 chr3L:10769710-10769830 1.0000 120 chr3L:4611458-4611578 1.0000 120 chrX:20480510-20480630 1.0000 120 chr3R:21184848-21184968 1.0000 120 chr3R:16094314-16094434 1.0000 120 chrX:3744175-3744295 1.0000 120 chr3R:9618508-9618628 1.0000 120 chr2R:23589226-23589346 1.0000 120 chr3L:377540-377660 1.0000 120 chr3R:29204789-29204909 1.0000 120 chr3L:18996278-18996398 1.0000 120 chr2R:14307826-14307946 1.0000 120 chrX:6263671-6263791 1.0000 120 chr2R:19714911-19715031 1.0000 120 chr3R:13914820-13914940 1.0000 120 chr2L:19425884-19426004 1.0000 120 chr3L:7008429-7008549 1.0000 120 chr2R:18302936-18303056 1.0000 120 chrX:3482810-3482930 1.0000 120 chr2L:3478454-3478574 1.0000 120 chr3L:18029724-18029844 1.0000 120 chr3L:10519077-10519197 1.0000 120 chr3R:5053718-5053838 1.0000 120 chr2L:14512964-14513084 1.0000 120 chr2L:13004142-13004262 1.0000 120 chr2L:5907558-5907678 1.0000 120 chr3L:11554509-11554629 1.0000 120 chr3R:22145976-22146096 1.0000 120 chr2R:16249920-16250040 1.0000 120 chr3R:23940615-23940735 1.0000 120 chr3L:12002982-12003102 1.0000 120 chr2R:22395295-22395415 1.0000 120 chr2L:5476758-5476878 1.0000 120 chr2L:10616894-10617014 1.0000 120 chr3R:5263630-5263750 1.0000 120 chr3R:14018144-14018264 1.0000 120 chrX:7291954-7292074 1.0000 120 chr2R:17005229-17005349 1.0000 120 chr3R:11778496-11778616 1.0000 120 chr3R:4665099-4665219 1.0000 120 chr2R:25167322-25167442 1.0000 120 chr2L:7596975-7597095 1.0000 120 chr3L:377739-377859 1.0000 120 chr2R:21576356-21576476 1.0000 120 chr2L:16620528-16620648 1.0000 120 chrX:15139413-15139533 1.0000 120 chr3L:12056872-12056992 1.0000 120 chr3R:14278013-14278133 1.0000 120 chr2L:1632784-1632904 1.0000 120 chr2R:9408778-9408898 1.0000 120 chr2R:19254663-19254783 1.0000 120 chrX:1943810-1943930 1.0000 120 chr3L:14802311-14802431 1.0000 120 chr3L:5824206-5824326 1.0000 120 chr3R:15219037-15219157 1.0000 120 chr3R:14108816-14108936 1.0000 120 chr3L:16534109-16534229 1.0000 120 chrX:3425131-3425251 1.0000 120 chr3R:30450472-30450592 1.0000 120 chrX:3329019-3329139 1.0000 120 chr2L:20918155-20918275 1.0000 120 chrX:18507268-18507388 1.0000 120 chr3R:15087689-15087809 1.0000 120 chr3L:17988279-17988399 1.0000 120 chrX:20655122-20655242 1.0000 120 chr3L:8137641-8137761 1.0000 120 chr2R:17422664-17422784 1.0000 120 chr2L:14461225-14461345 1.0000 120 chr2R:18875279-18875399 1.0000 120 chr3R:14391386-14391506 1.0000 120 chr3R:26017960-26018080 1.0000 120 chr2R:8241517-8241637 1.0000 120 chr3L:19516664-19516784 1.0000 120 chrX:7004229-7004349 1.0000 120 chr3L:5583452-5583572 1.0000 120 chr2L:19226463-19226583 1.0000 120 chr2L:3338915-3339035 1.0000 120 chr3L:11417523-11417643 1.0000 120 chr2L:2897069-2897189 1.0000 120 chrX:13130572-13130692 1.0000 120 chr3L:16105684-16105804 1.0000 120 chr3L:1876400-1876520 1.0000 120 chr3R:16247764-16247884 1.0000 120 chr3L:9025736-9025856 1.0000 120 chr2L:18477540-18477660 1.0000 120 chr2L:8514849-8514969 1.0000 120 chr2L:18890214-18890334 1.0000 120 chr3R:11779523-11779643 1.0000 120 chr3R:26228188-26228308 1.0000 120 chrX:7293712-7293832 1.0000 120 chr3L:15098869-15098989 1.0000 120 chr3L:725994-726114 1.0000 120 chr3R:9513176-9513296 1.0000 120 chrX:6771117-6771237 1.0000 120 chrX:6074993-6075113 1.0000 120 chr2R:14770380-14770500 1.0000 120 chr2R:16294196-16294316 1.0000 120 chr3R:22358988-22359108 1.0000 120 chrX:6097755-6097875 1.0000 120 chr2L:470645-470765 1.0000 120 chr3L:1008011-1008131 1.0000 120 chr3R:19584989-19585109 1.0000 120 chrX:7293135-7293255 1.0000 120 chr3L:18281399-18281519 1.0000 120 chrX:13337635-13337755 1.0000 120 chr3L:14272465-14272585 1.0000 120 chr3L:1368255-1368375 1.0000 120 chr2R:10302531-10302651 1.0000 120 chr2L:5299419-5299539 1.0000 120 chr3L:4109281-4109401 1.0000 120 chr3R:29717071-29717191 1.0000 120 chrX:17178704-17178824 1.0000 120 chr3L:1536917-1537037 1.0000 120 chr3L:1319230-1319350 1.0000 120 chr2L:1075896-1076016 1.0000 120 chr3R:30092750-30092870 1.0000 120 chr2L:2976911-2977031 1.0000 120 chr3R:14370650-14370770 1.0000 120 chr3L:1639442-1639562 1.0000 120 chr2L:17514222-17514342 1.0000 120 chr3R:22049231-22049351 1.0000 120 chr3R:22469197-22469317 1.0000 120 chrX:12719294-12719414 1.0000 120 chr3R:11962925-11963045 1.0000 120 chr2L:520817-520937 1.0000 120 chr2L:1422874-1422994 1.0000 120 chr3R:18995839-18995959 1.0000 120 chr2L:10752040-10752160 1.0000 120 chrX:6571713-6571833 1.0000 120 chr3R:10761033-10761153 1.0000 120 chrX:6854673-6854793 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG10565/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10565.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.331 C 0.167 G 0.165 T 0.337 Background letter frequencies (from file dataset with add-one prior applied): A 0.331 C 0.167 G 0.165 T 0.337 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GCGCCACC MEME-1 width = 8 sites = 17 llr = 175 E-value = 7.6e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :1:1:8:: pos.-specific C :929a268 probability G a:8::12: matrix T ::::::22 bits 2.6 * * 2.3 * * 2.1 ** * 1.8 ***** * Relative 1.6 ***** * Entropy 1.3 ***** * (14.8 bits) 1.0 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGCCACC consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14391386-14391506 28 1.17e-06 TCACCGGCAA GCGCCACC TACACGGGCA chr3L:21652922-21653042 6 1.17e-06 CTTAA GCGCCACC TACATTTTGT chr2L:14706336-14706456 2 1.17e-06 C GCGCCACC TATAGGCAAA chr3R:31061481-31061601 28 1.17e-06 TTTTTGAGCT GCGCCACC TAGCGGATGA chr3R:4665099-4665219 39 2.95e-06 GCGGCACATC GCCCCACC AGCCCACCTC chr3R:23658116-23658236 61 4.10e-06 Aacagcagaa gcgccagc aaaatcacca chr3R:29717071-29717191 94 7.05e-06 TCATGCAGTG GCGCCATC CGTCGTCTAG chr2L:3588387-3588507 9 7.05e-06 TGTCTgca gcgccgcc agcaacatgg chr3R:5299129-5299249 48 1.41e-05 GTGAGCATGA GCGACACC TGGCGGCAGA chr3L:20711553-20711673 24 1.41e-05 AGGAGTTGGT GCGACACC TAGCGCTTGG chr2L:6557459-6557579 45 1.53e-05 CAACGCAGTG GCGCCCTC TTGTGGTTTC chr3R:21184848-21184968 40 1.65e-05 GCACAGTAAA GCGCCCCT GGCGTTGAGT chr3R:21828367-21828487 89 1.94e-05 CTACGAGTGT GCCCCATC TGACTTTCAA chr2R:14526448-14526568 81 2.06e-05 CAACCCTGTC GCCCCCGC TCTATTCGCG chr3L:11417523-11417643 45 2.53e-05 AATGTTGCTT GCCCCACT GTCCGAGCAC chr3L:377739-377859 72 2.53e-05 CAATTATATT GAGCCACC TTAATGCTCC chr3L:17988279-17988399 71 2.88e-05 ACACTAGATG GCGCCAGT ATGTTATGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14391386-14391506 1.2e-06 27_[+1]_85 chr3L:21652922-21653042 1.2e-06 5_[+1]_107 chr2L:14706336-14706456 1.2e-06 1_[+1]_111 chr3R:31061481-31061601 1.2e-06 27_[+1]_85 chr3R:4665099-4665219 2.9e-06 38_[+1]_74 chr3R:23658116-23658236 4.1e-06 60_[+1]_52 chr3R:29717071-29717191 7e-06 93_[+1]_19 chr2L:3588387-3588507 7e-06 8_[+1]_104 chr3R:5299129-5299249 1.4e-05 47_[+1]_65 chr3L:20711553-20711673 1.4e-05 23_[+1]_89 chr2L:6557459-6557579 1.5e-05 44_[+1]_68 chr3R:21184848-21184968 1.6e-05 39_[+1]_73 chr3R:21828367-21828487 1.9e-05 88_[+1]_24 chr2R:14526448-14526568 2.1e-05 80_[+1]_32 chr3L:11417523-11417643 2.5e-05 44_[+1]_68 chr3L:377739-377859 2.5e-05 71_[+1]_41 chr3L:17988279-17988399 2.9e-05 70_[+1]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCACC width=8 seqs=17 chr3R:14391386-14391506 ( 28) GCGCCACC 1 chr3L:21652922-21653042 ( 6) GCGCCACC 1 chr2L:14706336-14706456 ( 2) GCGCCACC 1 chr3R:31061481-31061601 ( 28) GCGCCACC 1 chr3R:4665099-4665219 ( 39) GCCCCACC 1 chr3R:23658116-23658236 ( 61) GCGCCAGC 1 chr3R:29717071-29717191 ( 94) GCGCCATC 1 chr2L:3588387-3588507 ( 9) GCGCCGCC 1 chr3R:5299129-5299249 ( 48) GCGACACC 1 chr3L:20711553-20711673 ( 24) GCGACACC 1 chr2L:6557459-6557579 ( 45) GCGCCCTC 1 chr3R:21184848-21184968 ( 40) GCGCCCCT 1 chr3R:21828367-21828487 ( 89) GCCCCATC 1 chr2R:14526448-14526568 ( 81) GCCCCCGC 1 chr3L:11417523-11417643 ( 45) GCCCCACT 1 chr3L:377739-377859 ( 72) GAGCCACC 1 chr3L:17988279-17988399 ( 71) GCGCCAGT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0632 E= 7.6e-002 -1073 -1073 260 -1073 -249 249 -1073 -1073 -1073 49 221 -1073 -149 240 -1073 -1073 -1073 258 -1073 -1073 121 8 -148 -1073 -1073 195 10 -93 -1073 230 -1073 -93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 7.6e-002 0.000000 0.000000 1.000000 0.000000 0.058824 0.941176 0.000000 0.000000 0.000000 0.235294 0.764706 0.000000 0.117647 0.882353 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.764706 0.176471 0.058824 0.000000 0.000000 0.647059 0.176471 0.176471 0.000000 0.823529 0.000000 0.176471 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCACC MEME-1 regular expression -------------------------------------------------------------------------------- GC[GC]CCACC -------------------------------------------------------------------------------- Time 7.34 secs. ******************************************************************************** ******************************************************************************** MOTIF GCACTKGG MEME-2 width = 8 sites = 36 llr = 308 E-value = 1.0e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCACTKGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A 1:8:::2: pos.-specific C :a:a:132 probability G 9:3::456 matrix T ::::a4:3 bits 2.6 * 2.3 ** * 2.1 ** * 1.8 ** * Relative 1.6 ** ** Entropy 1.3 ** ** (12.4 bits) 1.0 ***** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCACTGGG consensus G TCT sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTKGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18029724-18029844 1 2.31e-06 . GCACTGGG ACAGCACTTG chr3L:6182060-6182180 86 2.31e-06 CCGCTTACCA GCACTGGG GCGAATTTAA chr3L:11416878-11416998 36 2.31e-06 ACACACAGGT GCACTGGG AGAAACTACT chr3L:20823523-20823643 67 2.31e-06 aacttttcca gcactggg taagcgtagt chrX:7291954-7292074 25 1.05e-05 TCATGTTTGT GCACTGCG AGAAATGCTG chr2L:5476758-5476878 7 1.05e-05 GCGGCT GCACTGCG AGAAATCGGT chr2L:10261144-10261264 6 1.05e-05 TTTTA GCACTGCG GTTTTAAACA chr3R:5053718-5053838 110 1.87e-05 ATTGCTCTCG GCGCTTGG CTC chr2L:3588387-3588507 70 1.87e-05 agcagcagAT GCACTCGG AAAAAATATG chr2L:3533236-3533356 50 1.87e-05 TTTAATGGTT GCGCTTGG CTAATCAGCC chr3L:20711553-20711673 34 1.87e-05 GCGACACCTA GCGCTTGG CAGTTGAACC chr3L:9025736-9025856 68 3.51e-05 CGCACAATTT GCACTGAG GAAAATATAT chr3R:29567099-29567219 6 3.51e-05 AAAAT GCACTGAG AGAAACCAGT chr2L:10752040-10752160 41 4.22e-05 ACAAATATGT GCACTTGC ATATTTACGT chr3R:16247764-16247884 34 4.22e-05 TCAATCAATT GCACTTGC ACAGTTTTAA chrX:14627579-14627699 111 4.22e-05 TTCTCCCAGT GCACTGCC CG chrX:20655122-20655242 59 5.75e-05 GCTACAGTGA GCACTCGC ATTGGGCGCC chr2L:1075896-1076016 17 7.19e-05 AGGGTAGTAT GCACTTGT GTAAGGAAGT chr2L:8164359-8164479 29 7.19e-05 TGAGCACATG GCACTGCT GTTTGTTCTT chr3R:11392925-11393045 56 7.19e-05 GGTTTTTATC GCACTGCT TGGCCGACCG chr3R:22145976-22146096 109 8.26e-05 CCACTTTGTC GCACTTAG CGGG chr3R:16261025-16261145 30 9.32e-05 GCTTCATTAG GCACTGAC AAATATAGTT chr3R:19096349-19096469 90 9.32e-05 GGAATGAAAA GCACTTCC TGATTTCTAA chr2R:14770380-14770500 70 1.05e-04 CACCGTGCTA GCGCTTGT TTACCAACAC chr3R:11778496-11778616 64 1.05e-04 AGGGCTAATG GCACTCGT TTTCATCCAA chr2R:17422082-17422202 61 1.05e-04 TTTTGGTGCT GCGCTTGT TTGTCCAGTC chr3R:26963911-26964031 113 1.05e-04 CTATATTCTT GCGCTGCT chr3L:17653585-17653705 24 1.05e-04 CAAGCAAACG GCGCTTGT TGTTATTGTA chr3L:12002982-12003102 71 1.15e-04 TAAATATTAG GCACTCAG CCACTTAAGT chr3R:4806535-4806655 70 1.15e-04 TATAGGTAGG GCGCTTAG GAATGGTTTG chr2L:7565075-7565195 78 1.43e-04 TGTTTTCGGT GCACTTCT CCCTCAGGTT chr2R:19714911-19715031 10 1.46e-04 TTGGGAATT GCGCTCAG TGTACTACTG chr2L:2897069-2897189 92 1.56e-04 TAATAGCCAG GCACTTAC AATTTCTCGC chrX:18507268-18507388 3 1.78e-04 CT ACACTGGG AAAAAATGTG chr2R:20062803-20062923 17 1.78e-04 TAAGCCTCTT ACACTGGG AAAAAGTGGG chr2R:21576356-21576476 14 2.55e-04 ATCTTGGACA GCAGTTGG TCTCAACTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTKGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18029724-18029844 2.3e-06 [+2]_112 chr3L:6182060-6182180 2.3e-06 85_[+2]_27 chr3L:11416878-11416998 2.3e-06 35_[+2]_77 chr3L:20823523-20823643 2.3e-06 66_[+2]_46 chrX:7291954-7292074 1e-05 24_[+2]_88 chr2L:5476758-5476878 1e-05 6_[+2]_106 chr2L:10261144-10261264 1e-05 5_[+2]_107 chr3R:5053718-5053838 1.9e-05 109_[+2]_3 chr2L:3588387-3588507 1.9e-05 69_[+2]_43 chr2L:3533236-3533356 1.9e-05 49_[+2]_63 chr3L:20711553-20711673 1.9e-05 33_[+2]_79 chr3L:9025736-9025856 3.5e-05 67_[+2]_45 chr3R:29567099-29567219 3.5e-05 5_[+2]_107 chr2L:10752040-10752160 4.2e-05 40_[+2]_72 chr3R:16247764-16247884 4.2e-05 33_[+2]_79 chrX:14627579-14627699 4.2e-05 110_[+2]_2 chrX:20655122-20655242 5.8e-05 58_[+2]_54 chr2L:1075896-1076016 7.2e-05 16_[+2]_96 chr2L:8164359-8164479 7.2e-05 28_[+2]_84 chr3R:11392925-11393045 7.2e-05 55_[+2]_57 chr3R:22145976-22146096 8.3e-05 108_[+2]_4 chr3R:16261025-16261145 9.3e-05 29_[+2]_83 chr3R:19096349-19096469 9.3e-05 89_[+2]_23 chr2R:14770380-14770500 0.00011 69_[+2]_43 chr3R:11778496-11778616 0.00011 63_[+2]_49 chr2R:17422082-17422202 0.00011 60_[+2]_52 chr3R:26963911-26964031 0.00011 112_[+2] chr3L:17653585-17653705 0.00011 23_[+2]_89 chr3L:12002982-12003102 0.00011 70_[+2]_42 chr3R:4806535-4806655 0.00011 69_[+2]_43 chr2L:7565075-7565195 0.00014 77_[+2]_35 chr2R:19714911-19715031 0.00015 9_[+2]_103 chr2L:2897069-2897189 0.00016 91_[+2]_21 chrX:18507268-18507388 0.00018 2_[+2]_110 chr2R:20062803-20062923 0.00018 16_[+2]_96 chr2R:21576356-21576476 0.00025 13_[+2]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTKGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCACTKGG width=8 seqs=36 chr3L:18029724-18029844 ( 1) GCACTGGG 1 chr3L:6182060-6182180 ( 86) GCACTGGG 1 chr3L:11416878-11416998 ( 36) GCACTGGG 1 chr3L:20823523-20823643 ( 67) GCACTGGG 1 chrX:7291954-7292074 ( 25) GCACTGCG 1 chr2L:5476758-5476878 ( 7) GCACTGCG 1 chr2L:10261144-10261264 ( 6) GCACTGCG 1 chr3R:5053718-5053838 ( 110) GCGCTTGG 1 chr2L:3588387-3588507 ( 70) GCACTCGG 1 chr2L:3533236-3533356 ( 50) GCGCTTGG 1 chr3L:20711553-20711673 ( 34) GCGCTTGG 1 chr3L:9025736-9025856 ( 68) GCACTGAG 1 chr3R:29567099-29567219 ( 6) GCACTGAG 1 chr2L:10752040-10752160 ( 41) GCACTTGC 1 chr3R:16247764-16247884 ( 34) GCACTTGC 1 chrX:14627579-14627699 ( 111) GCACTGCC 1 chrX:20655122-20655242 ( 59) GCACTCGC 1 chr2L:1075896-1076016 ( 17) GCACTTGT 1 chr2L:8164359-8164479 ( 29) GCACTGCT 1 chr3R:11392925-11393045 ( 56) GCACTGCT 1 chr3R:22145976-22146096 ( 109) GCACTTAG 1 chr3R:16261025-16261145 ( 30) GCACTGAC 1 chr3R:19096349-19096469 ( 90) GCACTTCC 1 chr2R:14770380-14770500 ( 70) GCGCTTGT 1 chr3R:11778496-11778616 ( 64) GCACTCGT 1 chr2R:17422082-17422202 ( 61) GCGCTTGT 1 chr3R:26963911-26964031 ( 113) GCGCTGCT 1 chr3L:17653585-17653705 ( 24) GCGCTTGT 1 chr3L:12002982-12003102 ( 71) GCACTCAG 1 chr3R:4806535-4806655 ( 70) GCGCTTAG 1 chr2L:7565075-7565195 ( 78) GCACTTCT 1 chr2R:19714911-19715031 ( 10) GCGCTCAG 1 chr2L:2897069-2897189 ( 92) GCACTTAC 1 chrX:18507268-18507388 ( 3) ACACTGGG 1 chr2R:20062803-20062923 ( 17) ACACTGGG 1 chr2R:21576356-21576476 ( 14) GCAGTTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTKGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.0197 E= 1.0e+001 -257 -1181 252 -1181 -1181 258 -1181 -1181 118 -1181 60 -1181 -1181 254 -257 -1181 -1181 -1181 -1181 157 -1181 -27 143 31 -58 58 168 -1181 -1181 22 175 -43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTKGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 36 E= 1.0e+001 0.055556 0.000000 0.944444 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.000000 0.972222 0.027778 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.138889 0.444444 0.416667 0.222222 0.250000 0.527778 0.000000 0.000000 0.194444 0.555556 0.250000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCACTKGG MEME-2 regular expression -------------------------------------------------------------------------------- GC[AG]CT[GT][GCA][GT] -------------------------------------------------------------------------------- Time 13.57 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGGTGGC MEME-3 width = 8 sites = 14 llr = 146 E-value = 6.1e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGGTGGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :33::::: pos.-specific C 77:2:::a probability G 3:78:9a: matrix T ::::a1:: bits 2.6 ** 2.3 ** 2.1 ** 1.8 * * *** Relative 1.6 ******** Entropy 1.3 ******** (15.1 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CCGGTGGC consensus GAAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTGGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:6771117-6771237 93 1.16e-06 TGGTGCGATA CCGGTGGC AGGCACGTGA chr3L:6124764-6124884 93 2.31e-06 AATTCCCGGG GCGGTGGC TGAACCTAAT chr3R:19096349-19096469 43 2.31e-06 CCTCTTGTGG GCGGTGGC AAATAAATTC chr3R:25446280-25446400 91 3.49e-06 TAGTCTCATC CCGCTGGC TAATTTAAGT chr2R:22395295-22395415 21 8.13e-06 CAACAATTAA CCAGTGGC GTAGAAAGGG chr2R:19714911-19715031 53 8.13e-06 CTCTGGGCGC CCAGTGGC GGCAATTCAA chr3R:29567099-29567219 19 8.13e-06 CTGAGAGAAA CCAGTGGC ACCAGTTGGT chr3R:23658116-23658236 76 8.13e-06 agcaaaatca ccagtggc aacgacaacg chr3R:31061481-31061601 64 8.13e-06 AAGTGGTATC CAGGTGGC GCCCGAAACA chr3R:11392925-11393045 100 1.17e-05 TTTCCACCGC CCGGTTGC ACACTGCTTT chr3R:29717071-29717191 48 1.63e-05 CATCTGTCGC GAGGTGGC GAAATCGGGA chr3R:22049231-22049351 85 2.09e-05 GTATCCCATT CAGCTGGC TTTACAGATT chr2R:14526448-14526568 64 2.09e-05 CTCTGTGGCA CAGCTGGC AACCCTGTCG chrX:13337635-13337755 97 2.79e-05 GACGCAGGCC GCGGTTGC TGGCTTGACT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTGGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6771117-6771237 1.2e-06 92_[+3]_20 chr3L:6124764-6124884 2.3e-06 92_[+3]_20 chr3R:19096349-19096469 2.3e-06 42_[+3]_70 chr3R:25446280-25446400 3.5e-06 90_[+3]_22 chr2R:22395295-22395415 8.1e-06 20_[+3]_92 chr2R:19714911-19715031 8.1e-06 52_[+3]_60 chr3R:29567099-29567219 8.1e-06 18_[+3]_94 chr3R:23658116-23658236 8.1e-06 75_[+3]_37 chr3R:31061481-31061601 8.1e-06 63_[+3]_49 chr3R:11392925-11393045 1.2e-05 99_[+3]_13 chr3R:29717071-29717191 1.6e-05 47_[+3]_65 chr3R:22049231-22049351 2.1e-05 84_[+3]_28 chr2R:14526448-14526568 2.1e-05 63_[+3]_49 chrX:13337635-13337755 2.8e-05 96_[+3]_16 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTGGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGGTGGC width=8 seqs=14 chrX:6771117-6771237 ( 93) CCGGTGGC 1 chr3L:6124764-6124884 ( 93) GCGGTGGC 1 chr3R:19096349-19096469 ( 43) GCGGTGGC 1 chr3R:25446280-25446400 ( 91) CCGCTGGC 1 chr2R:22395295-22395415 ( 21) CCAGTGGC 1 chr2R:19714911-19715031 ( 53) CCAGTGGC 1 chr3R:29567099-29567219 ( 19) CCAGTGGC 1 chr3R:23658116-23658236 ( 76) CCAGTGGC 1 chr3R:31061481-31061601 ( 64) CAGGTGGC 1 chr3R:11392925-11393045 ( 100) CCGGTTGC 1 chr3R:29717071-29717191 ( 48) GAGGTGGC 1 chr3R:22049231-22049351 ( 85) CAGCTGGC 1 chr2R:14526448-14526568 ( 64) CAGCTGGC 1 chrX:13337635-13337755 ( 97) GCGGTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTGGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5839 E= 6.1e+000 -1045 209 79 -1045 -21 209 -1045 -1045 -21 -1045 212 -1045 -1045 36 225 -1045 -1045 -1045 -1045 157 -1045 -1045 238 -124 -1045 -1045 260 -1045 -1045 258 -1045 -1045 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTGGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 6.1e+000 0.000000 0.714286 0.285714 0.000000 0.285714 0.714286 0.000000 0.000000 0.285714 0.000000 0.714286 0.000000 0.000000 0.214286 0.785714 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.857143 0.142857 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGGTGGC MEME-3 regular expression -------------------------------------------------------------------------------- [CG][CA][GA][GC]TGGC -------------------------------------------------------------------------------- Time 19.73 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGCGTG MEME-4 width = 8 sites = 3 llr = 41 E-value = 9.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a::: probability G aaaa:a:a matrix T ::::::a: bits 2.6 ****** * 2.3 ****** * 2.1 ****** * 1.8 ****** * Relative 1.6 ******** Entropy 1.3 ******** (19.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGGCGTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:7293135-7293255 56 1.14e-06 TGGCCGAACA GGGGCGTG GCACAAAAAA chr3R:19584989-19585109 59 1.14e-06 GGGCGAGCGA GGGGCGTG AGCTGGGAAA chr3L:5824206-5824326 113 1.14e-06 CTTTTTGTTG GGGGCGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:7293135-7293255 1.1e-06 55_[+4]_57 chr3R:19584989-19585109 1.1e-06 58_[+4]_54 chr3L:5824206-5824326 1.1e-06 112_[+4] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGCGTG width=8 seqs=3 chrX:7293135-7293255 ( 56) GGGGCGTG 1 chr3R:19584989-19585109 ( 59) GGGGCGTG 1 chr3L:5824206-5824326 ( 113) GGGGCGTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 9.3e+002 -823 -823 260 -823 -823 -823 260 -823 -823 -823 260 -823 -823 -823 260 -823 -823 257 -823 -823 -823 -823 260 -823 -823 -823 -823 157 -823 -823 260 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 9.3e+002 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGCGTG MEME-4 regular expression -------------------------------------------------------------------------------- GGGGCGTG -------------------------------------------------------------------------------- Time 25.79 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKGGGCG MEME-5 width = 8 sites = 2 llr = 27 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKGGGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::::a: probability G aa5aaa:a matrix T ::5::::: bits 2.6 ** ***** 2.3 ** ***** 2.1 ** ***** 1.8 ** ***** Relative 1.6 ** ***** Entropy 1.3 ** ***** (19.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGGGGGCG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:19584989-19585109 46 5.56e-07 GGTCGGCTTT GGGGGGCG AGCGAGGGGC chr3L:11422540-11422660 113 1.69e-06 AGCGGGCGTC GGTGGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:19584989-19585109 5.6e-07 45_[+5]_67 chr3L:11422540-11422660 1.7e-06 112_[+5] -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKGGGCG width=8 seqs=2 chr3R:19584989-19585109 ( 46) GGGGGGCG 1 chr3L:11422540-11422660 ( 113) GGTGGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.0e+004 -765 -765 260 -765 -765 -765 260 -765 -765 -765 160 57 -765 -765 260 -765 -765 -765 260 -765 -765 -765 260 -765 -765 257 -765 -765 -765 -765 260 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGCG MEME-5 regular expression -------------------------------------------------------------------------------- GG[GT]GGGCG -------------------------------------------------------------------------------- Time 31.91 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:22433026-22433146 1.00e+00 120 chr2R:17892972-17893092 9.93e-01 120 chr3R:17551222-17551342 5.40e-01 120 chr3R:20588582-20588702 1.45e-01 120 chr3L:20711553-20711673 1.75e-04 23_[+1(1.41e-05)]_2_[+2(1.87e-05)]_\ 79 chr3L:9034413-9034533 1.00e+00 120 chr3R:19096349-19096469 1.76e-06 42_[+3(2.31e-06)]_39_[+2(9.32e-05)]_\ 23 chr3L:8954780-8954900 5.19e-01 120 chr3R:13779274-13779394 9.99e-01 120 chr3L:3862584-3862704 9.88e-01 120 chr3L:11261054-11261174 1.22e-01 120 chr2L:10261144-10261264 1.06e-01 5_[+2(1.05e-05)]_107 chr2L:3533236-3533356 1.25e-03 49_[+2(1.87e-05)]_22_[+1(6.58e-05)]_\ 33 chr2R:8082781-8082901 8.32e-01 120 chr2R:22510864-22510984 1.73e-01 120 chr2R:20838019-20838139 9.76e-01 120 chr2L:8835017-8835137 6.33e-02 120 chr3L:19255203-19255323 2.35e-02 120 chr3L:20823523-20823643 2.41e-03 66_[+2(2.31e-06)]_46 chrX:12583290-12583410 4.03e-01 120 chr3R:31395350-31395470 2.44e-02 120 chrX:18923631-18923751 6.44e-01 120 chr3R:21828367-21828487 7.05e-02 88_[+1(1.94e-05)]_24 chr3R:31252717-31252837 9.70e-01 120 chr3R:31061481-31061601 2.58e-06 27_[+1(1.17e-06)]_28_[+3(8.13e-06)]_\ 49 chr3L:11285201-11285321 3.72e-01 120 chr3L:9011883-9012003 1.22e-02 99_[+4(4.35e-05)]_13 chrX:10362981-10363101 9.95e-01 120 chr2R:22411581-22411701 9.85e-01 120 chr2R:6984558-6984678 6.60e-01 120 chr3R:28329288-28329408 6.37e-01 120 chr3R:4886236-4886356 2.71e-02 120 chr3L:17242223-17242343 9.27e-02 120 chr2L:21846482-21846602 4.73e-01 120 chr3R:13999708-13999828 6.90e-01 120 chr3R:16448836-16448956 5.26e-01 120 chr2R:15848067-15848187 9.52e-03 120 chr2L:16656751-16656871 8.57e-01 120 chrX:8774192-8774312 2.15e-01 120 chr3L:17653585-17653705 2.03e-02 120 chr3R:5299129-5299249 5.41e-03 47_[+1(1.41e-05)]_65 chr3R:14326901-14327021 5.42e-01 120 chr3L:11375400-11375520 5.48e-01 120 chrX:4446196-4446316 9.68e-01 120 chr2L:14047285-14047405 9.86e-01 120 chr3R:26963911-26964031 1.01e-01 120 chrX:7301587-7301707 9.68e-01 120 chr3R:5212357-5212477 8.19e-01 120 chr2R:22395926-22396046 9.88e-01 120 chr2L:18899392-18899512 9.33e-01 120 chr3L:18348752-18348872 9.34e-01 120 chr2L:2182821-2182941 4.94e-01 120 chrX:6599403-6599523 5.48e-01 120 chr3R:14714656-14714776 9.09e-01 120 chr2L:18653463-18653583 6.24e-01 120 chr2L:14556971-14557091 5.17e-01 120 chr2R:7773270-7773390 2.32e-01 120 chrX:18645796-18645916 9.13e-01 120 chr2R:14526448-14526568 1.92e-03 63_[+3(2.09e-05)]_9_[+1(2.06e-05)]_\ 32 chr3R:11392925-11393045 2.19e-03 55_[+2(7.19e-05)]_36_[+3(1.17e-05)]_\ 13 chr2L:2885618-2885738 5.11e-01 120 chr2L:6557459-6557579 4.61e-05 44_[+1(1.53e-05)]_68 chr3L:6124764-6124884 2.91e-05 92_[+3(2.31e-06)]_20 chrX:12202334-12202454 9.99e-01 120 chrX:11338414-11338534 9.93e-01 120 chr3L:7988951-7989071 9.20e-01 120 chr2L:3574092-3574212 3.33e-01 120 chr3R:12982613-12982733 8.81e-01 120 chr2L:8164359-8164479 3.99e-02 28_[+2(7.19e-05)]_84 chr2L:7565075-7565195 1.13e-02 108_[+1(8.36e-05)]_4 chr2R:17422082-17422202 7.49e-03 120 chr2R:11371181-11371301 2.69e-02 120 chr3L:16782465-16782585 2.85e-03 40_[+3(3.03e-05)]_72 chr2R:19255994-19256114 6.44e-01 120 chr3L:13957236-13957356 7.92e-02 120 chr3R:25446280-25446400 9.33e-03 90_[+3(3.49e-06)]_22 chr2L:20326445-20326565 9.41e-01 120 chr3R:4663201-4663321 8.33e-01 120 chr3R:4806535-4806655 8.34e-03 120 chr3L:11416878-11416998 9.00e-03 35_[+2(2.31e-06)]_77 chr3L:11415496-11415616 8.37e-01 120 chrX:15043156-15043276 4.23e-02 66_[+3(6.54e-05)]_46 chr2L:13515087-13515207 9.02e-01 120 chrX:14627579-14627699 5.56e-02 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chr3R:29717071-29717191 1.57e-06 33_[+1(7.05e-06)]_6_[+3(1.63e-05)]_\ 38_[+1(7.05e-06)]_19 chrX:17178704-17178824 2.41e-01 120 chr3L:1536917-1537037 6.06e-01 120 chr3L:1319230-1319350 6.34e-01 120 chr2L:1075896-1076016 6.75e-02 16_[+2(7.19e-05)]_96 chr3R:30092750-30092870 8.91e-01 120 chr2L:2976911-2977031 2.21e-01 120 chr3R:14370650-14370770 9.86e-01 120 chr3L:1639442-1639562 5.57e-01 120 chr2L:17514222-17514342 9.72e-01 120 chr3R:22049231-22049351 4.71e-02 84_[+3(2.09e-05)]_28 chr3R:22469197-22469317 2.52e-01 120 chrX:12719294-12719414 2.71e-01 120 chr3R:11962925-11963045 9.68e-01 120 chr2L:520817-520937 7.77e-01 120 chr2L:1422874-1422994 4.75e-01 120 chr3R:18995839-18995959 9.84e-01 120 chr2L:10752040-10752160 1.19e-03 40_[+2(4.22e-05)]_72 chrX:6571713-6571833 1.35e-01 120 chr3R:10761033-10761153 1.27e-01 120 chrX:6854673-6854793 4.61e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n05.farnam.hpc.yale.internal ********************************************************************************