******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10543.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:23730282-23730402 1.0000 120 chr3L:2090010-2090130 1.0000 120 chr3L:632136-632256 1.0000 120 chr2R:24945417-24945537 1.0000 120 chrX:2219381-2219501 1.0000 120 chr2R:23724134-23724254 1.0000 120 chr2L:6751114-6751234 1.0000 120 chr2R:6938222-6938342 1.0000 120 chr3L:17045815-17045935 1.0000 120 chr3L:17002572-17002692 1.0000 120 chr3L:1614530-1614650 1.0000 120 chrX:1285393-1285513 1.0000 120 chr3L:13519909-13520029 1.0000 120 chrX:6356871-6356991 1.0000 120 chrX:15441435-15441555 1.0000 120 chr3L:9433347-9433467 1.0000 120 chr2R:10314832-10314952 1.0000 120 chr3R:30174949-30175069 1.0000 120 chr2L:8086956-8087076 1.0000 120 chr2R:23935921-23936041 1.0000 120 chr2L:19012868-19012988 1.0000 120 chrX:11556915-11557035 1.0000 120 chr3R:31420725-31420845 1.0000 120 chrX:15465502-15465622 1.0000 120 chr3L:8553275-8553395 1.0000 120 chr2R:19269728-19269848 1.0000 120 chr3R:21624684-21624804 1.0000 120 chr2R:7729861-7729981 1.0000 120 chr3R:20604207-20604327 1.0000 120 chr3R:20168037-20168157 1.0000 120 chr2L:19406569-19406689 1.0000 120 chr2R:24399703-24399823 1.0000 120 chr2R:7033396-7033516 1.0000 120 chr2R:23730483-23730603 1.0000 120 chr2R:7451646-7451766 1.0000 120 chr2R:10287610-10287730 1.0000 120 chr2L:19023985-19024105 1.0000 120 chr2R:21642047-21642167 1.0000 120 chrX:9108554-9108674 1.0000 120 chr2R:6812482-6812602 1.0000 120 chr2R:17728731-17728851 1.0000 120 chr3L:20387557-20387677 1.0000 120 chr3L:9814698-9814818 1.0000 120 chr2L:19404967-19405087 1.0000 120 chrX:2208826-2208946 1.0000 120 chr2R:7063563-7063683 1.0000 120 chrX:2036613-2036733 1.0000 120 chr3R:15177363-15177483 1.0000 120 chr3R:12259133-12259253 1.0000 120 chr3R:17704035-17704155 1.0000 120 chrX:18626081-18626201 1.0000 120 chrX:2032998-2033118 1.0000 120 chr2R:17784330-17784450 1.0000 120 chr2L:20869918-20870038 1.0000 120 chrX:20519869-20519989 1.0000 120 chrX:19606008-19606128 1.0000 120 chr3R:20317819-20317939 1.0000 120 chr2R:21662175-21662295 1.0000 120 chr2R:24694382-24694502 1.0000 120 chr2L:18503890-18504010 1.0000 120 chr3L:1964845-1964965 1.0000 120 chr3R:20976757-20976877 1.0000 120 chrX:12668797-12668917 1.0000 120 chr2R:15862829-15862949 1.0000 120 chr3R:9891569-9891689 1.0000 120 chr3R:16256206-16256326 1.0000 120 chrX:19602583-19602703 1.0000 120 chr2R:7987303-7987423 1.0000 120 chrX:16281879-16281999 1.0000 120 chr2R:24881966-24882086 1.0000 120 chr3R:30062712-30062832 1.0000 120 chr3L:5808652-5808772 1.0000 120 chr2L:19018361-19018481 1.0000 120 chr2L:19036419-19036539 1.0000 120 chr3R:21151214-21151334 1.0000 120 chr2R:22282237-22282357 1.0000 120 chr3L:6707222-6707342 1.0000 120 chr3L:1602120-1602240 1.0000 120 chr2R:11364665-11364785 1.0000 120 chr2R:9429510-9429630 1.0000 120 chr3L:17430573-17430693 1.0000 120 chr3R:11762571-11762691 1.0000 120 chr3R:24026707-24026827 1.0000 120 chr3L:638056-638176 1.0000 120 chr3R:26259961-26260081 1.0000 120 chr2R:11275490-11275610 1.0000 120 chr2R:15984514-15984634 1.0000 120 chr3R:19621063-19621183 1.0000 120 chr3R:16254050-16254170 1.0000 120 chr2L:5029297-5029417 1.0000 120 chrX:1276817-1276937 1.0000 120 chr3L:20538575-20538695 1.0000 120 chr2R:6149566-6149686 1.0000 120 chr2R:14265644-14265764 1.0000 120 chrX:3405573-3405693 1.0000 120 chr2R:9189360-9189480 1.0000 120 chr2R:10292207-10292327 1.0000 120 chr3R:5054950-5055070 1.0000 120 chr2R:17750268-17750388 1.0000 120 chr2L:442476-442596 1.0000 120 chr2R:9273080-9273200 1.0000 120 chr3R:6477986-6478106 1.0000 120 chr2L:14537968-14538088 1.0000 120 chr3L:8629927-8630047 1.0000 120 chr3R:28831410-28831530 1.0000 120 chr3L:630856-630976 1.0000 120 chr3R:15476151-15476271 1.0000 120 chr3L:15514960-15515080 1.0000 120 chr2R:17270110-17270230 1.0000 120 chr3L:300217-300337 1.0000 120 chr3R:9770219-9770339 1.0000 120 chr3R:9491295-9491415 1.0000 120 chr3R:21582814-21582934 1.0000 120 chr2L:20401056-20401176 1.0000 120 chr3L:1649035-1649155 1.0000 120 chr2R:7153603-7153723 1.0000 120 chr3R:16213397-16213517 1.0000 120 chrX:1287466-1287586 1.0000 120 chr2R:13493619-13493739 1.0000 120 chr3L:19013545-19013665 1.0000 120 chr3R:31599995-31600115 1.0000 120 chrX:16414858-16414978 1.0000 120 chr3R:17062851-17062971 1.0000 120 chr3R:13997887-13998007 1.0000 120 chr3R:12398835-12398955 1.0000 120 chr2R:13492333-13492453 1.0000 120 chr3R:22598907-22599027 1.0000 120 chr3R:28563668-28563788 1.0000 120 chrX:13396123-13396243 1.0000 120 chr3R:4130453-4130573 1.0000 120 chr2L:16790942-16791062 1.0000 120 chr2L:1007834-1007954 1.0000 120 chr2R:14212703-14212823 1.0000 120 chrX:13680315-13680435 1.0000 120 chr2R:8149905-8150025 1.0000 120 chr2L:8094323-8094443 1.0000 120 chr3R:18053100-18053220 1.0000 120 chr3R:17002778-17002898 1.0000 120 chr3R:9939667-9939787 1.0000 120 chr2R:13334983-13335103 1.0000 120 chr3R:10099535-10099655 1.0000 120 chr3L:19016266-19016386 1.0000 120 chr2R:6117688-6117808 1.0000 120 chr2R:24971883-24972003 1.0000 120 chr3R:24283794-24283914 1.0000 120 chr2R:10734333-10734453 1.0000 120 chr3L:19813452-19813572 1.0000 120 chr3L:8578616-8578736 1.0000 120 chr3L:22175696-22175816 1.0000 120 chr2R:23672174-23672294 1.0000 120 chr2L:8734496-8734616 1.0000 120 chr3L:2457966-2458086 1.0000 120 chr2L:7405103-7405223 1.0000 120 chr2R:20672627-20672747 1.0000 120 chr3R:16209486-16209606 1.0000 120 chr2L:8171667-8171787 1.0000 120 chr2L:2993456-2993576 1.0000 120 chr2L:19015747-19015867 1.0000 120 chr3R:30537047-30537167 1.0000 120 chr3L:11285663-11285783 1.0000 120 chr2R:6116712-6116832 1.0000 120 chr2R:24957463-24957583 1.0000 120 chr3L:10532245-10532365 1.0000 120 chr2R:21532130-21532250 1.0000 120 chr3R:20311499-20311619 1.0000 120 chr3L:11376369-11376489 1.0000 120 chr2R:7282529-7282649 1.0000 120 chr3R:23191197-23191317 1.0000 120 chr2R:8150118-8150238 1.0000 120 chr3L:19019469-19019589 1.0000 120 chr2L:3639969-3640089 1.0000 120 chrX:16308444-16308564 1.0000 120 chr2R:7626425-7626545 1.0000 120 chr3R:14058716-14058836 1.0000 120 chr2L:1116854-1116974 1.0000 120 chrX:13310877-13310997 1.0000 120 chr3L:16703008-16703128 1.0000 120 chr3L:606581-606701 1.0000 120 chr3L:17948331-17948451 1.0000 120 chr3L:22888832-22888952 1.0000 120 chr3R:8814421-8814541 1.0000 120 chr3R:16356920-16357040 1.0000 120 chr2L:21304063-21304183 1.0000 120 chr3R:17706960-17707080 1.0000 120 chrX:20661804-20661924 1.0000 120 chr2R:9444902-9445022 1.0000 120 chr2R:20943792-20943912 1.0000 120 chr2R:23057747-23057867 1.0000 120 chr2L:6085846-6085966 1.0000 120 chr3R:21081208-21081328 1.0000 120 chr2R:9926884-9927004 1.0000 120 chr2R:16009180-16009300 1.0000 120 chrX:599854-599974 1.0000 120 chr3L:21056867-21056987 1.0000 120 chr2R:14573211-14573331 1.0000 120 chrX:13403703-13403823 1.0000 120 chr3R:9529742-9529862 1.0000 120 chr3L:1741751-1741871 1.0000 120 chr3R:21584636-21584756 1.0000 120 chr3R:13017687-13017807 1.0000 120 chr3R:16982327-16982447 1.0000 120 chr3L:9096777-9096897 1.0000 120 chr3R:30191201-30191321 1.0000 120 chr3R:22523048-22523168 1.0000 120 chr2R:9814266-9814386 1.0000 120 chr3R:13018665-13018785 1.0000 120 chrX:19713404-19713524 1.0000 120 chr3L:16150278-16150398 1.0000 120 chr3L:11291298-11291418 1.0000 120 chr3R:16225882-16226002 1.0000 120 chr2R:7953081-7953201 1.0000 120 chr2L:20936202-20936322 1.0000 120 chr2R:13006574-13006694 1.0000 120 chr3R:22754580-22754700 1.0000 120 chr3R:9774363-9774483 1.0000 120 chr2R:8336160-8336280 1.0000 120 chr3R:11968225-11968345 1.0000 120 chr2R:12438796-12438916 1.0000 120 chr3L:1968027-1968147 1.0000 120 chr2L:18995873-18995993 1.0000 120 chr3R:20837363-20837483 1.0000 120 chr3R:18412397-18412517 1.0000 120 chr3L:15959032-15959152 1.0000 120 chr3L:20386084-20386204 1.0000 120 chr3L:17991170-17991290 1.0000 120 chr2R:13009351-13009471 1.0000 120 chrX:13322567-13322687 1.0000 120 chr2R:12973065-12973185 1.0000 120 chr2R:9283731-9283851 1.0000 120 chrX:9868685-9868805 1.0000 120 chr3L:17003643-17003763 1.0000 120 chr3L:19901657-19901777 1.0000 120 chr3L:22838088-22838208 1.0000 120 chr2R:18807295-18807415 1.0000 120 chr3R:9883673-9883793 1.0000 120 chr3L:8094807-8094927 1.0000 120 chr2R:15559415-15559535 1.0000 120 chr3R:5081845-5081965 1.0000 120 chr2R:9610444-9610564 1.0000 120 chrX:13280373-13280493 1.0000 120 chr2R:12998624-12998744 1.0000 120 chr2R:15733341-15733461 1.0000 120 chr2R:6149770-6149890 1.0000 120 chr3R:9529537-9529657 1.0000 120 chr2L:20773629-20773749 1.0000 120 chr3R:16252049-16252169 1.0000 120 chr3L:16958688-16958808 1.0000 120 chr3R:23764086-23764206 1.0000 120 chr3R:16987686-16987806 1.0000 120 chr2L:1656957-1657077 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG10543/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10543.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.243 C 0.264 G 0.255 T 0.238 Background letter frequencies (from file dataset with add-one prior applied): A 0.243 C 0.264 G 0.255 T 0.238 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TKTTRTTT MEME-1 width = 8 sites = 43 llr = 367 E-value = 1.2e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif TKTTRTTT MEME-1 Description -------------------------------------------------------------------------------- Simplified A 2:::4::: pos.-specific C :::1:::: probability G :4::6::3 matrix T 86a9:aa7 bits 2.1 * ** 1.9 * ** 1.7 * ** 1.4 ** ** Relative 1.2 * ** *** Entropy 1.0 ******** (12.3 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TTTTGTTT consensus AG A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTRTTT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20773629-20773749 1 1.10e-05 . TTTTGTTT CAATGGCTGG chr3R:9883673-9883793 36 1.10e-05 ATGGTCGCCA TTTTGTTT TCTCACCGTT chr3R:17062851-17062971 60 1.10e-05 CCGCTCGTTT TTTTGTTT TTATGGTTTT chr3R:30174949-30175069 51 1.10e-05 TCGGATTCTG TTTTGTTT TCTTTTATTT chr3L:632136-632256 30 1.10e-05 CTTCGTTCTT TTTTGTTT GGCTCTGACG chr3L:22838088-22838208 108 2.28e-05 AACTGGCCAT TGTTGTTT TAGGT chr3R:21584636-21584756 15 2.28e-05 GGGCCTGCGC TGTTGTTT TGCTTGATAT chr2L:442476-442596 9 2.28e-05 GATTTCGC TGTTGTTT TTTCTCTGCC chr3R:9891569-9891689 9 2.28e-05 AGGTATTT TGTTGTTT GTAGTGTGTA chrX:20519869-20519989 91 2.28e-05 ACCCTGCTGT TGTTGTTT ATGCTCGCCG chr2R:14573211-14573331 112 3.34e-05 TATGAGCGCC TTTTATTT T chr2R:9926884-9927004 47 3.34e-05 ttattattat ttttattt ttatATACAA chr2R:6149566-6149686 74 3.34e-05 ACAGTGGCCA TTTTATTT TAGGAGTCGT chr2L:19406569-19406689 107 3.34e-05 TATATTTGTA TTTTATTT TTTCCC chr2R:19269728-19269848 101 3.34e-05 CGGGTTATTT TTTTATTT GTCGATTGTT chr3L:13519909-13520029 71 3.34e-05 AAAAAACGAA TTTTATTT TTCGCTGTTT chr3L:11376369-11376489 93 4.46e-05 AACCGAAATT TGTTATTT ATACACGAGC chr3R:4130453-4130573 83 4.46e-05 GTAGACTCAG TGTTATTT AAACAGCGTA chr2L:1116854-1116974 106 5.64e-05 GGCGACGGGC TTTTGTTG CTTTTGT chr2R:7626425-7626545 13 6.77e-05 CTGCCGTCGC ATTTGTTT ATGGGTCTCT chr2R:10734333-10734453 113 6.77e-05 TCGCTGGTTT ATTTGTTT chr3R:16213397-16213517 36 6.77e-05 CCTCCTTCTC ATTTGTTT GTCACAATAG chr2R:17270110-17270230 9 6.77e-05 TTTTACAC ATTTGTTt gtatttgtat chrX:13280373-13280493 33 8.04e-05 GGCAAGTAAA TGTTGTTG CTGTTGCTTT chr2R:13009351-13009471 24 8.04e-05 TTGCTATTGC TGTTGTTG CTATTGCCAC chr3R:23191197-23191317 36 8.04e-05 tgtcgtttgt tgttgttg tcgttTGAAT chr3L:8629927-8630047 22 8.04e-05 GATGGTGTAT TGTTGTTG CCCGCGTTTA chr2L:19012868-19012988 90 8.04e-05 GGAACGTACT TGTTGTTG CCGTCGGGCT chrX:2219381-2219501 20 8.04e-05 TGACGCCGAA TGTTGTTG CCGCCGTTGT chr3R:21582814-21582934 112 9.16e-05 CTGGCGAGCG TTTTATTG T chr2R:21662175-21662295 5 9.16e-05 GAAC TTTTATTG TGCGTTGAGT chr2R:9189360-9189480 71 1.04e-04 CCGTGGCCAA AGTTGTTT TCGCCAAAAG chr2R:10287610-10287730 93 1.04e-04 ATAAAAAAAT AGTTGTTT ATACTGGGCG chr3R:20976757-20976877 107 1.14e-04 CGTTTTGCTT ATTTATTT TTACGA chr2R:7033396-7033516 3 1.14e-04 GC ATTTATTT GGCCACTGCA chrX:20661804-20661924 7 1.39e-04 gtttcg tttcgttt cgtATTGCTG chr3L:606581-606701 26 1.39e-04 GGGGGCATTC TGTTATTG TTTTGTACGA chr3R:15476151-15476271 19 1.39e-04 TCTGGCGATG TTTCGTTT CGGCTCGCTT chr2L:8094323-8094443 59 1.75e-04 ATGTCAAGTT TTTCATTT GATTTTCATC chr3R:13997887-13998007 32 2.00e-04 CTGGGCTGTT TGTCATTT GGACCTAGGC chr3L:638056-638176 53 2.00e-04 TGGCATCACA TGTCATTT ATAGTTGGGC chr3R:20317819-20317939 105 2.00e-04 CTGGTACTTT TGTCATTT GCCGCTGG chrX:1285393-1285513 17 2.00e-04 TCGCTCTACA ATTTGTTG CCTGTCATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTRTTT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20773629-20773749 1.1e-05 [+1]_112 chr3R:9883673-9883793 1.1e-05 35_[+1]_77 chr3R:17062851-17062971 1.1e-05 59_[+1]_53 chr3R:30174949-30175069 1.1e-05 50_[+1]_62 chr3L:632136-632256 1.1e-05 29_[+1]_83 chr3L:22838088-22838208 2.3e-05 107_[+1]_5 chr3R:21584636-21584756 2.3e-05 14_[+1]_98 chr2L:442476-442596 2.3e-05 8_[+1]_104 chr3R:9891569-9891689 2.3e-05 8_[+1]_104 chrX:20519869-20519989 2.3e-05 90_[+1]_22 chr2R:14573211-14573331 3.3e-05 111_[+1]_1 chr2R:9926884-9927004 3.3e-05 46_[+1]_66 chr2R:6149566-6149686 3.3e-05 73_[+1]_39 chr2L:19406569-19406689 3.3e-05 106_[+1]_6 chr2R:19269728-19269848 3.3e-05 100_[+1]_12 chr3L:13519909-13520029 3.3e-05 70_[+1]_42 chr3L:11376369-11376489 4.5e-05 92_[+1]_20 chr3R:4130453-4130573 4.5e-05 82_[+1]_30 chr2L:1116854-1116974 5.6e-05 105_[+1]_7 chr2R:7626425-7626545 6.8e-05 12_[+1]_100 chr2R:10734333-10734453 6.8e-05 112_[+1] chr3R:16213397-16213517 6.8e-05 35_[+1]_77 chr2R:17270110-17270230 6.8e-05 8_[+1]_104 chrX:13280373-13280493 8e-05 32_[+1]_80 chr2R:13009351-13009471 8e-05 23_[+1]_89 chr3R:23191197-23191317 8e-05 35_[+1]_77 chr3L:8629927-8630047 8e-05 21_[+1]_91 chr2L:19012868-19012988 8e-05 89_[+1]_23 chrX:2219381-2219501 8e-05 19_[+1]_93 chr3R:21582814-21582934 9.2e-05 111_[+1]_1 chr2R:21662175-21662295 9.2e-05 4_[+1]_108 chr2R:9189360-9189480 0.0001 70_[+1]_42 chr2R:10287610-10287730 0.0001 92_[+1]_20 chr3R:20976757-20976877 0.00011 106_[+1]_6 chr2R:7033396-7033516 0.00011 2_[+1]_110 chrX:20661804-20661924 0.00014 6_[+1]_106 chr3L:606581-606701 0.00014 25_[+1]_87 chr3R:15476151-15476271 0.00014 18_[+1]_94 chr2L:8094323-8094443 0.00017 58_[+1]_54 chr3R:13997887-13998007 0.0002 31_[+1]_81 chr3L:638056-638176 0.0002 52_[+1]_60 chr3R:20317819-20317939 0.0002 104_[+1]_8 chrX:1285393-1285513 0.0002 16_[+1]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTRTTT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TKTTRTTT width=8 seqs=43 chr2L:20773629-20773749 ( 1) TTTTGTTT 1 chr3R:9883673-9883793 ( 36) TTTTGTTT 1 chr3R:17062851-17062971 ( 60) TTTTGTTT 1 chr3R:30174949-30175069 ( 51) TTTTGTTT 1 chr3L:632136-632256 ( 30) TTTTGTTT 1 chr3L:22838088-22838208 ( 108) TGTTGTTT 1 chr3R:21584636-21584756 ( 15) TGTTGTTT 1 chr2L:442476-442596 ( 9) TGTTGTTT 1 chr3R:9891569-9891689 ( 9) TGTTGTTT 1 chrX:20519869-20519989 ( 91) TGTTGTTT 1 chr2R:14573211-14573331 ( 112) TTTTATTT 1 chr2R:9926884-9927004 ( 47) TTTTATTT 1 chr2R:6149566-6149686 ( 74) TTTTATTT 1 chr2L:19406569-19406689 ( 107) TTTTATTT 1 chr2R:19269728-19269848 ( 101) TTTTATTT 1 chr3L:13519909-13520029 ( 71) TTTTATTT 1 chr3L:11376369-11376489 ( 93) TGTTATTT 1 chr3R:4130453-4130573 ( 83) TGTTATTT 1 chr2L:1116854-1116974 ( 106) TTTTGTTG 1 chr2R:7626425-7626545 ( 13) ATTTGTTT 1 chr2R:10734333-10734453 ( 113) ATTTGTTT 1 chr3R:16213397-16213517 ( 36) ATTTGTTT 1 chr2R:17270110-17270230 ( 9) ATTTGTTT 1 chrX:13280373-13280493 ( 33) TGTTGTTG 1 chr2R:13009351-13009471 ( 24) TGTTGTTG 1 chr3R:23191197-23191317 ( 36) TGTTGTTG 1 chr3L:8629927-8630047 ( 22) TGTTGTTG 1 chr2L:19012868-19012988 ( 90) TGTTGTTG 1 chrX:2219381-2219501 ( 20) TGTTGTTG 1 chr3R:21582814-21582934 ( 112) TTTTATTG 1 chr2R:21662175-21662295 ( 5) TTTTATTG 1 chr2R:9189360-9189480 ( 71) AGTTGTTT 1 chr2R:10287610-10287730 ( 93) AGTTGTTT 1 chr3R:20976757-20976877 ( 107) ATTTATTT 1 chr2R:7033396-7033516 ( 3) ATTTATTT 1 chrX:20661804-20661924 ( 7) TTTCGTTT 1 chr3L:606581-606701 ( 26) TGTTATTG 1 chr3R:15476151-15476271 ( 19) TTTCGTTT 1 chr2L:8094323-8094443 ( 59) TTTCATTT 1 chr3R:13997887-13998007 ( 32) TGTCATTT 1 chr3L:638056-638176 ( 53) TGTCATTT 1 chr3R:20317819-20317939 ( 105) TGTCATTT 1 chrX:1285393-1285513 ( 17) ATTTGTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTRTTT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2246 E= 1.2e-005 -22 -1207 -1207 173 -1207 -1207 79 123 -1207 -1207 -1207 207 -1207 -92 -1207 185 70 -1207 125 -1207 -1207 -1207 -1207 207 -1207 -1207 -1207 207 -1207 -1207 1 164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTRTTT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 43 E= 1.2e-005 0.209302 0.000000 0.000000 0.790698 0.000000 0.000000 0.441860 0.558140 0.000000 0.000000 0.000000 1.000000 0.000000 0.139535 0.000000 0.860465 0.395349 0.000000 0.604651 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.255814 0.744186 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TKTTRTTT MEME-1 regular expression -------------------------------------------------------------------------------- [TA][TG]TT[GA]TT[TG] -------------------------------------------------------------------------------- Time 7.37 secs. ******************************************************************************** ******************************************************************************** MOTIF AAABMAAA MEME-2 width = 8 sites = 52 llr = 410 E-value = 1.5e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAABMAAA MEME-2 Description -------------------------------------------------------------------------------- Simplified A aaa25aa6 pos.-specific C :::33::2 probability G :::21::: matrix T :::31::2 bits 2.1 *** ** 1.9 *** ** 1.7 *** ** 1.4 *** ** Relative 1.2 *** ** Entropy 1.0 *** ** (11.4 bits) 0.8 *** ** 0.6 *** *** 0.4 *** **** 0.2 *** **** 0.0 -------- Multilevel AAACAAAA consensus TC C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAABMAAA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17003643-17003763 79 1.32e-05 TACGCAAGCA AAACAAAA GCGAGCCACA chr2R:15984514-15984634 71 1.32e-05 GAGAGAAGAT AAACAAAA ATACGTTGGC chr3R:11762571-11762691 37 1.32e-05 TCTCTTGGCG AAACAAAA CAACTGTAAA chr2R:19269728-19269848 21 1.32e-05 ATTTTGCTGT AAACAAAA ATTGTGTAAT chr3L:22838088-22838208 62 2.51e-05 TACATAATCC AAATAAAA GCAAACATCA chr3L:17948331-17948451 12 2.51e-05 GCATAATTCC AAATAAAA TGTATAACCA chr2R:10734333-10734453 52 2.51e-05 AAAGCGAAAT AAATAAAA AACAGACGCG chr3R:31599995-31600115 23 2.51e-05 AGGGCAGCGA AAATAAAA AACAAATTGC chr2R:9429510-9429630 94 2.51e-05 CACTTGGTCA AAATAAAA ACAGAAACAG chr2R:7626425-7626545 42 5.22e-05 CCGTAAAAAT AAACCAAA ATTCCTTTGA chr2R:13492333-13492453 24 5.22e-05 CAGGTTAAGT AAAGAAAA AAGAAATCAC chr2L:14537968-14538088 6 5.22e-05 ATTAA AAACCAAA GAAAGCAAAT chr2L:18503890-18504010 95 5.22e-05 AGCCGAGAGG AAAGAAAA TTCCGCACGC chr2R:7063563-7063683 33 5.22e-05 caaaaaccaa aaaccaaa cagcaaacgc chr2R:10314832-10314952 60 5.22e-05 CAAAAACCGA AAACCAAA CCCATTGATG chr3L:19813452-19813572 76 6.52e-05 CTCAGTTGAT AAATCAAA CACACACATG chr2L:1656957-1657077 9 9.12e-05 AAAAATAT AAAAAAAA GTATGGCGTG chr3L:11291298-11291418 11 9.12e-05 ATAATAATAA AAAGCAAA CTCAGGCACA chr3R:30537047-30537167 55 9.12e-05 ATATAATTGA AAAGCAAA CGTTTTGCGT chr3R:17704035-17704155 70 9.12e-05 ggcaatagct aaagcaaa agccaaagcc chr3R:15177363-15177483 40 9.12e-05 CACGCACCGA AAAAAAAA ATTGAGTCAA chrX:9108554-9108674 72 9.12e-05 GTGCCACCAA AAAGCAAA GGCGGAGGAA chr3L:13519909-13520029 58 9.12e-05 ATTCTGCCCA AAAAAAAA ACGAATTTTA chrX:13280373-13280493 107 1.06e-04 TGGCTGTTGC AAACAAAC AGACGG chr3R:18412397-18412517 8 1.06e-04 GCCCCCC AAACAAAC TATACGTAAA chr3R:5081845-5081965 107 1.19e-04 AAACGAAATG AAAACAAA CAACCG chr2R:23057747-23057867 74 1.19e-04 GTTGCCATCA AAAACAAA CATCGACAAA chr2L:20773629-20773749 64 1.32e-04 GTGGGGAATC AAATAAAC GCCCGCCCTG chr3R:9529537-9529657 11 1.32e-04 CTTTAGAGCT AAATAAAC AACAGAACCA chr3L:2457966-2458086 58 1.32e-04 GTAGATAGGA AAATAAAC AGTGAATAGT chr3R:6477986-6478106 72 1.32e-04 GACTTGTATA AAATAAAC AGGCGATGGT chr2R:24945417-24945537 101 1.32e-04 CGAAAACATA AAATAAAC AATTCCATTT chr3R:18053100-18053220 47 1.45e-04 GCAGGCGCGT AAACAAAT ACAGAAAACA chr2R:9189360-9189480 43 1.74e-04 GTTGACTCCG AAACCAAC AAGTCCAGGC chr2R:6149566-6149686 93 1.74e-04 AGGAGTCGTA AAACCAAC CCAATGGAAC chr3R:12259133-12259253 39 1.74e-04 TCGGACCGAA AAACCAAC CGCGCTAATC chr3L:20387557-20387677 105 1.74e-04 CGGTTTAGGC AAACCAAC GTAGTATA chr2L:19023985-19024105 74 1.74e-04 CCGAACCAGC AAACCAAC CCGCCCACCG chr3R:20168037-20168157 81 1.86e-04 ATACAGCCCC AAATAAAT AGATGTCCAC chr3R:9529742-9529862 92 2.26e-04 AATCAAATCG AAAGAAAT ACCAAAATTG chr2R:9926884-9927004 12 2.26e-04 GCGCAAACAG AAAGAAAT CGttataata chr3L:9096777-9096897 106 2.68e-04 GAGGCCACAG AAACGAAA CGAGCGC chrX:13680315-13680435 87 3.07e-04 caactaaact aaactaaa ctGAGCAGCT chr3L:2090010-2090130 65 3.07e-04 GCTAATATTC AAATGAAA AATACAACTT chr2R:23730282-23730402 54 3.07e-04 ACAAACAGCT AAATGAAA CATAGGAGAC chr3L:16703008-16703128 30 3.32e-04 GAATTTAAAC AAAGCAAT TCAAGCGAGG chr2R:10287610-10287730 85 3.32e-04 ACGAAAGCAT AAAAAAAT AGTTGTTTAT chrX:15441435-15441555 95 3.32e-04 CGACTGTTAC AAAAAAAT GTTTGTAGCC chr2R:11275490-11275610 6 3.71e-04 GAAAA AAAGGAAA ATACGAAAAG chr2L:2993456-2993576 46 3.84e-04 ACATTAGAGA AAAGTAAA TAGCGAATAT chr3R:9939667-9939787 7 3.84e-04 AAACCG AAAGTAAA CAACTGGCGA chrX:12668797-12668917 2 3.97e-04 C AAAACAAT CGGAGGGAAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAABMAAA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17003643-17003763 1.3e-05 78_[+2]_34 chr2R:15984514-15984634 1.3e-05 70_[+2]_42 chr3R:11762571-11762691 1.3e-05 36_[+2]_76 chr2R:19269728-19269848 1.3e-05 20_[+2]_92 chr3L:22838088-22838208 2.5e-05 61_[+2]_51 chr3L:17948331-17948451 2.5e-05 11_[+2]_101 chr2R:10734333-10734453 2.5e-05 51_[+2]_61 chr3R:31599995-31600115 2.5e-05 22_[+2]_90 chr2R:9429510-9429630 2.5e-05 93_[+2]_19 chr2R:7626425-7626545 5.2e-05 41_[+2]_71 chr2R:13492333-13492453 5.2e-05 23_[+2]_89 chr2L:14537968-14538088 5.2e-05 5_[+2]_107 chr2L:18503890-18504010 5.2e-05 94_[+2]_18 chr2R:7063563-7063683 5.2e-05 32_[+2]_80 chr2R:10314832-10314952 5.2e-05 59_[+2]_53 chr3L:19813452-19813572 6.5e-05 75_[+2]_37 chr2L:1656957-1657077 9.1e-05 8_[+2]_104 chr3L:11291298-11291418 9.1e-05 10_[+2]_102 chr3R:30537047-30537167 9.1e-05 54_[+2]_58 chr3R:17704035-17704155 9.1e-05 69_[+2]_43 chr3R:15177363-15177483 9.1e-05 39_[+2]_73 chrX:9108554-9108674 9.1e-05 71_[+2]_41 chr3L:13519909-13520029 9.1e-05 57_[+2]_55 chrX:13280373-13280493 0.00011 106_[+2]_6 chr3R:18412397-18412517 0.00011 7_[+2]_105 chr3R:5081845-5081965 0.00012 106_[+2]_6 chr2R:23057747-23057867 0.00012 73_[+2]_39 chr2L:20773629-20773749 0.00013 63_[+2]_49 chr3R:9529537-9529657 0.00013 10_[+2]_102 chr3L:2457966-2458086 0.00013 57_[+2]_55 chr3R:6477986-6478106 0.00013 71_[+2]_41 chr2R:24945417-24945537 0.00013 100_[+2]_12 chr3R:18053100-18053220 0.00014 46_[+2]_66 chr2R:9189360-9189480 0.00017 42_[+2]_70 chr2R:6149566-6149686 0.00017 92_[+2]_20 chr3R:12259133-12259253 0.00017 38_[+2]_74 chr3L:20387557-20387677 0.00017 104_[+2]_8 chr2L:19023985-19024105 0.00017 73_[+2]_39 chr3R:20168037-20168157 0.00019 80_[+2]_32 chr3R:9529742-9529862 0.00023 91_[+2]_21 chr2R:9926884-9927004 0.00023 11_[+2]_101 chr3L:9096777-9096897 0.00027 105_[+2]_7 chrX:13680315-13680435 0.00031 86_[+2]_26 chr3L:2090010-2090130 0.00031 64_[+2]_48 chr2R:23730282-23730402 0.00031 53_[+2]_59 chr3L:16703008-16703128 0.00033 29_[+2]_83 chr2R:10287610-10287730 0.00033 84_[+2]_28 chrX:15441435-15441555 0.00033 94_[+2]_18 chr2R:11275490-11275610 0.00037 5_[+2]_107 chr2L:2993456-2993576 0.00038 45_[+2]_67 chr3R:9939667-9939787 0.00038 6_[+2]_106 chrX:12668797-12668917 0.0004 1_[+2]_111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAABMAAA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAABMAAA width=8 seqs=52 chr3L:17003643-17003763 ( 79) AAACAAAA 1 chr2R:15984514-15984634 ( 71) AAACAAAA 1 chr3R:11762571-11762691 ( 37) AAACAAAA 1 chr2R:19269728-19269848 ( 21) AAACAAAA 1 chr3L:22838088-22838208 ( 62) AAATAAAA 1 chr3L:17948331-17948451 ( 12) AAATAAAA 1 chr2R:10734333-10734453 ( 52) AAATAAAA 1 chr3R:31599995-31600115 ( 23) AAATAAAA 1 chr2R:9429510-9429630 ( 94) AAATAAAA 1 chr2R:7626425-7626545 ( 42) AAACCAAA 1 chr2R:13492333-13492453 ( 24) AAAGAAAA 1 chr2L:14537968-14538088 ( 6) AAACCAAA 1 chr2L:18503890-18504010 ( 95) AAAGAAAA 1 chr2R:7063563-7063683 ( 33) AAACCAAA 1 chr2R:10314832-10314952 ( 60) AAACCAAA 1 chr3L:19813452-19813572 ( 76) AAATCAAA 1 chr2L:1656957-1657077 ( 9) AAAAAAAA 1 chr3L:11291298-11291418 ( 11) AAAGCAAA 1 chr3R:30537047-30537167 ( 55) AAAGCAAA 1 chr3R:17704035-17704155 ( 70) AAAGCAAA 1 chr3R:15177363-15177483 ( 40) AAAAAAAA 1 chrX:9108554-9108674 ( 72) AAAGCAAA 1 chr3L:13519909-13520029 ( 58) AAAAAAAA 1 chrX:13280373-13280493 ( 107) AAACAAAC 1 chr3R:18412397-18412517 ( 8) AAACAAAC 1 chr3R:5081845-5081965 ( 107) AAAACAAA 1 chr2R:23057747-23057867 ( 74) AAAACAAA 1 chr2L:20773629-20773749 ( 64) AAATAAAC 1 chr3R:9529537-9529657 ( 11) AAATAAAC 1 chr3L:2457966-2458086 ( 58) AAATAAAC 1 chr3R:6477986-6478106 ( 72) AAATAAAC 1 chr2R:24945417-24945537 ( 101) AAATAAAC 1 chr3R:18053100-18053220 ( 47) AAACAAAT 1 chr2R:9189360-9189480 ( 43) AAACCAAC 1 chr2R:6149566-6149686 ( 93) AAACCAAC 1 chr3R:12259133-12259253 ( 39) AAACCAAC 1 chr3L:20387557-20387677 ( 105) AAACCAAC 1 chr2L:19023985-19024105 ( 74) AAACCAAC 1 chr3R:20168037-20168157 ( 81) AAATAAAT 1 chr3R:9529742-9529862 ( 92) AAAGAAAT 1 chr2R:9926884-9927004 ( 12) AAAGAAAT 1 chr3L:9096777-9096897 ( 106) AAACGAAA 1 chrX:13680315-13680435 ( 87) AAACTAAA 1 chr3L:2090010-2090130 ( 65) AAATGAAA 1 chr2R:23730282-23730402 ( 54) AAATGAAA 1 chr3L:16703008-16703128 ( 30) AAAGCAAT 1 chr2R:10287610-10287730 ( 85) AAAAAAAT 1 chrX:15441435-15441555 ( 95) AAAAAAAT 1 chr2R:11275490-11275610 ( 6) AAAGGAAA 1 chr2L:2993456-2993576 ( 46) AAAGTAAA 1 chr3R:9939667-9939787 ( 7) AAAGTAAA 1 chrX:12668797-12668917 ( 2) AAAACAAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAABMAAA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.2487 E= 1.5e+000 204 -1234 -1234 -1234 204 -1234 -1234 -1234 204 -1234 -1234 -1234 -66 39 -14 18 110 39 -173 -204 204 -1234 -1234 -1234 204 -1234 -1234 -1234 134 -20 -1234 -63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAABMAAA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 1.5e+000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.153846 0.346154 0.230769 0.269231 0.519231 0.346154 0.076923 0.057692 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.615385 0.230769 0.000000 0.153846 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAABMAAA MEME-2 regular expression -------------------------------------------------------------------------------- AAA[CTG][AC]AA[AC] -------------------------------------------------------------------------------- Time 13.59 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTKTKTG MEME-3 width = 8 sites = 47 llr = 378 E-value = 2.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTKTKTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :3:2:::: pos.-specific C ::::::3: probability G :6:5:5:a matrix T a1a3a57: bits 2.1 * * * * 1.9 * * * * 1.7 * * * * 1.4 * * * * Relative 1.2 * * * ** Entropy 1.0 * * **** (11.6 bits) 0.8 *** **** 0.6 *** **** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TGTGTTTG consensus A T GC sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTKTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9774363-9774483 23 1.27e-05 GGTCGGCTGG TGTGTTTG AATGGCACGG chr2R:10292207-10292327 49 1.27e-05 TCTACGTCGC TGTGTTTG TTTGTCAATT chr2R:7987303-7987423 82 1.27e-05 TGCGCGGACC TGTGTTTG TGCGTGTTCA chr2L:19406569-19406689 27 1.27e-05 GCGTTTTGGG TGTGTTTG TGTGGGTAGG chr2R:12973065-12973185 48 2.62e-05 ATTATCTCTT TGTGTGTG CCAGCGATTA chr2L:6085846-6085966 62 2.62e-05 CACGCGTATC TGTGTGTG CTGCCAAAAA chr3R:15177363-15177483 95 2.62e-05 ATATAGCGCC TGTGTGTG TTGCCTATAT chrX:9108554-9108674 57 2.62e-05 AGATAAGTGC TGTGTGTG CCACCAAAAA chr3L:8553275-8553395 36 2.62e-05 AAGAATTGAC TGTGTGTG AAGATTCGGT chr3L:2090010-2090130 18 2.62e-05 AAGCCCGCGG TGTGTGTG CGCTAGATGT chr3R:23764086-23764206 26 5.07e-05 AGGTGAACGG TGTTTGTG CCTCCATCCA chrX:16308444-16308564 31 5.07e-05 CGAGCCCAAG TGTTTGTG GGGTGTTTGC chr3L:638056-638176 23 5.07e-05 CCTTGGCGTA TGTTTGTG GCTACAGGGC chr2R:24881966-24882086 72 5.07e-05 ATCTCTGGCG TGTTTGTG TGCTAATTAA chr3R:9883673-9883793 104 6.28e-05 CCTGTACGTA TGTATTTG TATGTATTT chr2R:13009351-13009471 6 6.28e-05 TACAT TGTATTTG TTGCTATTGC chr3R:20837363-20837483 56 1.02e-04 GCTACATATG TATGTTTG TATATATCTT chr3R:21584636-21584756 75 1.02e-04 CGAGTATCGG TGTGTTCG AGGTGCGAGT chr2R:9444902-9445022 76 1.02e-04 GCAATTATTC TGTGTTCG CTTCAGTCGC chr3R:22598907-22599027 17 1.02e-04 CTCTTCAGCT TGTGTTCG TACGTCAGCA chr2R:9273080-9273200 70 1.02e-04 CTATACTATA TGTATGTG TATATCAACC chr2L:6751114-6751234 19 1.02e-04 TATCTGTGCC TGTATGTG GCACGCCGAC chr2L:2993456-2993576 1 1.30e-04 . tgtgtgcg taagtgtgtC chr3R:28831410-28831530 41 1.30e-04 CGCATGTATC TATGTGTG ATACATGCAC chr3L:1602120-1602240 24 1.30e-04 TGTGCGACTC TGTGTGCG TGCCGCTTGC chr2R:7729861-7729981 28 1.30e-04 AGTTTCGACT TGTGTGCG TGGGTTTGGT chr3R:18053100-18053220 27 1.54e-04 CTCTGCAATG TATTTTTG CGGCAGGCGC chr3L:630856-630976 20 1.54e-04 GGGTTTTCGC TGTTTTCG GGCTTTCGGG chr2R:6149566-6149686 51 1.54e-04 AAGGATCGAT TATTTTTG GGCCGACAGT chr3R:12259133-12259253 78 1.54e-04 TGTCCGTCTT TGTTTTCG TTCTGTCGGA chrX:1285393-1285513 38 1.54e-04 GTCATTTGCT TATTTTTG TGGCGctacc chr3L:1614530-1614650 40 1.54e-04 ATTTCGCGTT TATTTTTG GCCCCATCCA chrX:2219381-2219501 67 1.54e-04 TTTATGCTGC TATTTTTG GAACTCGGCC chr2R:24957463-24957583 91 1.80e-04 TCGTAAGCGT TGTTTGCG CTTAACTCTT chr2R:20943792-20943912 92 2.05e-04 CCTCGCTGTG TGTATTCG TTTGAGTATT chr3R:26259961-26260081 25 2.05e-04 TCCGTCTATA TGTATTCG TGAGCTTGCT chr2L:20869918-20870038 112 2.05e-04 AGACAACATC TGTATTCG C chr2R:16009180-16009300 26 2.57e-04 TATATGCGTC TATATGTG TTATGAATTA chr2R:9926884-9927004 65 2.57e-04 ttatATACAA TATATGTG GGGGAGCGCG chr2L:8171667-8171787 38 2.57e-04 GCTGAATCTG TTTGTTTG CCCAAGGGCG chrX:19602583-19602703 12 2.57e-04 GAAAGCATAC TTTGTTTG AATACCACGA chr2R:23935921-23936041 20 2.57e-04 CAGAGATTCG TATATGTG GCTAGGTATA chrX:9868685-9868805 108 2.84e-04 CGGTCTACGG TTTGTGTG GGCTG chr3L:1741751-1741871 31 2.84e-04 ATGAAAGCTC TATGTGCG GGTATTTCAC chr3R:30537047-30537167 89 2.84e-04 ATAAGGCGAA TATGTGCG GCGTATATGC chr3R:23191197-23191317 20 3.08e-04 TTTGAGTGCt tttttttg tcgtttgttg chr3R:17062851-17062971 75 3.08e-04 TTTTTATGGT TTTTTTTG TTAAGAATTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTKTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9774363-9774483 1.3e-05 22_[+3]_90 chr2R:10292207-10292327 1.3e-05 48_[+3]_64 chr2R:7987303-7987423 1.3e-05 81_[+3]_31 chr2L:19406569-19406689 1.3e-05 26_[+3]_86 chr2R:12973065-12973185 2.6e-05 47_[+3]_65 chr2L:6085846-6085966 2.6e-05 61_[+3]_51 chr3R:15177363-15177483 2.6e-05 94_[+3]_18 chrX:9108554-9108674 2.6e-05 56_[+3]_56 chr3L:8553275-8553395 2.6e-05 35_[+3]_77 chr3L:2090010-2090130 2.6e-05 17_[+3]_95 chr3R:23764086-23764206 5.1e-05 25_[+3]_87 chrX:16308444-16308564 5.1e-05 30_[+3]_82 chr3L:638056-638176 5.1e-05 22_[+3]_90 chr2R:24881966-24882086 5.1e-05 71_[+3]_41 chr3R:9883673-9883793 6.3e-05 103_[+3]_9 chr2R:13009351-13009471 6.3e-05 5_[+3]_107 chr3R:20837363-20837483 0.0001 55_[+3]_57 chr3R:21584636-21584756 0.0001 74_[+3]_38 chr2R:9444902-9445022 0.0001 75_[+3]_37 chr3R:22598907-22599027 0.0001 16_[+3]_96 chr2R:9273080-9273200 0.0001 69_[+3]_43 chr2L:6751114-6751234 0.0001 18_[+3]_94 chr2L:2993456-2993576 0.00013 [+3]_112 chr3R:28831410-28831530 0.00013 40_[+3]_72 chr3L:1602120-1602240 0.00013 23_[+3]_89 chr2R:7729861-7729981 0.00013 27_[+3]_85 chr3R:18053100-18053220 0.00015 26_[+3]_86 chr3L:630856-630976 0.00015 19_[+3]_93 chr2R:6149566-6149686 0.00015 50_[+3]_62 chr3R:12259133-12259253 0.00015 77_[+3]_35 chrX:1285393-1285513 0.00015 37_[+3]_75 chr3L:1614530-1614650 0.00015 39_[+3]_73 chrX:2219381-2219501 0.00015 66_[+3]_46 chr2R:24957463-24957583 0.00018 90_[+3]_22 chr2R:20943792-20943912 0.00021 91_[+3]_21 chr3R:26259961-26260081 0.00021 24_[+3]_88 chr2L:20869918-20870038 0.00021 111_[+3]_1 chr2R:16009180-16009300 0.00026 25_[+3]_87 chr2R:9926884-9927004 0.00026 64_[+3]_48 chr2L:8171667-8171787 0.00026 37_[+3]_75 chrX:19602583-19602703 0.00026 11_[+3]_101 chr2R:23935921-23936041 0.00026 19_[+3]_93 chrX:9868685-9868805 0.00028 107_[+3]_5 chr3L:1741751-1741871 0.00028 30_[+3]_82 chr3R:30537047-30537167 0.00028 88_[+3]_24 chr3R:23191197-23191317 0.00031 19_[+3]_93 chr3R:17062851-17062971 0.00031 74_[+3]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTKTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTKTKTG width=8 seqs=47 chr3R:9774363-9774483 ( 23) TGTGTTTG 1 chr2R:10292207-10292327 ( 49) TGTGTTTG 1 chr2R:7987303-7987423 ( 82) TGTGTTTG 1 chr2L:19406569-19406689 ( 27) TGTGTTTG 1 chr2R:12973065-12973185 ( 48) TGTGTGTG 1 chr2L:6085846-6085966 ( 62) TGTGTGTG 1 chr3R:15177363-15177483 ( 95) TGTGTGTG 1 chrX:9108554-9108674 ( 57) TGTGTGTG 1 chr3L:8553275-8553395 ( 36) TGTGTGTG 1 chr3L:2090010-2090130 ( 18) TGTGTGTG 1 chr3R:23764086-23764206 ( 26) TGTTTGTG 1 chrX:16308444-16308564 ( 31) TGTTTGTG 1 chr3L:638056-638176 ( 23) TGTTTGTG 1 chr2R:24881966-24882086 ( 72) TGTTTGTG 1 chr3R:9883673-9883793 ( 104) TGTATTTG 1 chr2R:13009351-13009471 ( 6) TGTATTTG 1 chr3R:20837363-20837483 ( 56) TATGTTTG 1 chr3R:21584636-21584756 ( 75) TGTGTTCG 1 chr2R:9444902-9445022 ( 76) TGTGTTCG 1 chr3R:22598907-22599027 ( 17) TGTGTTCG 1 chr2R:9273080-9273200 ( 70) TGTATGTG 1 chr2L:6751114-6751234 ( 19) TGTATGTG 1 chr2L:2993456-2993576 ( 1) TGTGTGCG 1 chr3R:28831410-28831530 ( 41) TATGTGTG 1 chr3L:1602120-1602240 ( 24) TGTGTGCG 1 chr2R:7729861-7729981 ( 28) TGTGTGCG 1 chr3R:18053100-18053220 ( 27) TATTTTTG 1 chr3L:630856-630976 ( 20) TGTTTTCG 1 chr2R:6149566-6149686 ( 51) TATTTTTG 1 chr3R:12259133-12259253 ( 78) TGTTTTCG 1 chrX:1285393-1285513 ( 38) TATTTTTG 1 chr3L:1614530-1614650 ( 40) TATTTTTG 1 chrX:2219381-2219501 ( 67) TATTTTTG 1 chr2R:24957463-24957583 ( 91) TGTTTGCG 1 chr2R:20943792-20943912 ( 92) TGTATTCG 1 chr3R:26259961-26260081 ( 25) TGTATTCG 1 chr2L:20869918-20870038 ( 112) TGTATTCG 1 chr2R:16009180-16009300 ( 26) TATATGTG 1 chr2R:9926884-9927004 ( 65) TATATGTG 1 chr2L:8171667-8171787 ( 38) TTTGTTTG 1 chrX:19602583-19602703 ( 12) TTTGTTTG 1 chr2R:23935921-23936041 ( 20) TATATGTG 1 chrX:9868685-9868805 ( 108) TTTGTGTG 1 chr3L:1741751-1741871 ( 31) TATGTGCG 1 chr3R:30537047-30537167 ( 89) TATGTGCG 1 chr3R:23191197-23191317 ( 20) TTTTTTTG 1 chr3R:17062851-17062971 ( 75) TTTTTTTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTKTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3123 E= 2.2e+001 -1220 -1220 -1220 207 7 -1220 132 -116 -1220 -1220 -1220 207 -19 -1220 94 32 -1220 -1220 -1220 207 -1220 -1220 94 110 -1220 17 -1220 156 -1220 -1220 197 -1220 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTKTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 47 E= 2.2e+001 0.000000 0.000000 0.000000 1.000000 0.255319 0.000000 0.638298 0.106383 0.000000 0.000000 0.000000 1.000000 0.212766 0.000000 0.489362 0.297872 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.489362 0.510638 0.000000 0.297872 0.000000 0.702128 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTKTKTG MEME-3 regular expression -------------------------------------------------------------------------------- T[GA]T[GTA]T[TG][TC]G -------------------------------------------------------------------------------- Time 19.71 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGATAR MEME-4 width = 8 sites = 13 llr = 136 E-value = 9.1e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGATAR MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::a:a6 pos.-specific C :a:::::: probability G a::a:::4 matrix T ::a::a:: bits 2.1 * ***** 1.9 ******* 1.7 ******* 1.4 ******* Relative 1.2 ******* Entropy 1.0 ******** (15.1 bits) 0.8 ******** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGATAA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGATAR MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20936202-20936322 50 1.40e-05 AGCAGCGGCT GCTGATAA CAACAACAGC chr3L:9096777-9096897 54 1.40e-05 GTATAAAAGT GCTGATAA GGCATCGCTA chr2R:16009180-16009300 62 1.40e-05 GACCTTAATC GCTGATAA CGCCAGCTCC chrX:20661804-20661924 21 1.40e-05 gtttcgtATT GCTGATAA CTTATCAGTC chr3R:14058716-14058836 57 1.40e-05 TTAGAGCAGC GCTGATAA TGGCTCTAAA chr3L:1602120-1602240 40 1.40e-05 CGTGCCGCTT GCTGATAA GAAGCTGACG chr2R:7063563-7063683 104 1.40e-05 CGGCCTGTGG GCTGATAA GGCTCTCCG chr2R:24399703-24399823 10 1.40e-05 TTTGGCAAT GCTGATAA AATAAGTAAA chr3R:5081845-5081965 79 2.86e-05 GGCCCCAGCA GCTGATAG TTGATTGCTC chr2R:9283731-9283851 13 2.86e-05 GGGGCCGCTA GCTGATAG GGAAAAAGTT chr3R:18412397-18412517 109 2.86e-05 AGGCGGCTGT GCTGATAG AGAA chr2R:22282237-22282357 75 2.86e-05 CGCCTCCTTA GCTGATAG CACCACCACG chr2R:15862829-15862949 5 2.86e-05 TGCT GCTGATAG GAACGCGGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGATAR MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20936202-20936322 1.4e-05 49_[+4]_63 chr3L:9096777-9096897 1.4e-05 53_[+4]_59 chr2R:16009180-16009300 1.4e-05 61_[+4]_51 chrX:20661804-20661924 1.4e-05 20_[+4]_92 chr3R:14058716-14058836 1.4e-05 56_[+4]_56 chr3L:1602120-1602240 1.4e-05 39_[+4]_73 chr2R:7063563-7063683 1.4e-05 103_[+4]_9 chr2R:24399703-24399823 1.4e-05 9_[+4]_103 chr3R:5081845-5081965 2.9e-05 78_[+4]_34 chr2R:9283731-9283851 2.9e-05 12_[+4]_100 chr3R:18412397-18412517 2.9e-05 108_[+4]_4 chr2R:22282237-22282357 2.9e-05 74_[+4]_38 chr2R:15862829-15862949 2.9e-05 4_[+4]_108 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGATAR MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGATAR width=8 seqs=13 chr2L:20936202-20936322 ( 50) GCTGATAA 1 chr3L:9096777-9096897 ( 54) GCTGATAA 1 chr2R:16009180-16009300 ( 62) GCTGATAA 1 chrX:20661804-20661924 ( 21) GCTGATAA 1 chr3R:14058716-14058836 ( 57) GCTGATAA 1 chr3L:1602120-1602240 ( 40) GCTGATAA 1 chr2R:7063563-7063683 ( 104) GCTGATAA 1 chr2R:24399703-24399823 ( 10) GCTGATAA 1 chr3R:5081845-5081965 ( 79) GCTGATAG 1 chr2R:9283731-9283851 ( 13) GCTGATAG 1 chr3R:18412397-18412517 ( 109) GCTGATAG 1 chr2R:22282237-22282357 ( 75) GCTGATAG 1 chr2R:15862829-15862949 ( 5) GCTGATAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGATAR MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 9.1e+001 -1035 -1035 197 -1035 -1035 192 -1035 -1035 -1035 -1035 -1035 207 -1035 -1035 197 -1035 204 -1035 -1035 -1035 -1035 -1035 -1035 207 204 -1035 -1035 -1035 134 -1035 59 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGATAR MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 9.1e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.615385 0.000000 0.384615 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGATAR MEME-4 regular expression -------------------------------------------------------------------------------- GCTGATA[AG] -------------------------------------------------------------------------------- Time 25.80 secs. ******************************************************************************** ******************************************************************************** MOTIF CASAYACA MEME-5 width = 8 sites = 30 llr = 261 E-value = 1.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CASAYACA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:a:a1a pos.-specific C a:6:5:7: probability G ::4:1:2: matrix T ::::4::: bits 2.1 * * * * 1.9 ** * * * 1.7 ** * * * 1.4 ** * * * Relative 1.2 ** * * * Entropy 1.0 **** * * (12.6 bits) 0.8 **** *** 0.6 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CACACACA consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAYACA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9283731-9283851 64 1.69e-05 cgcacacttc cacacaca cgcatgcaca chr3R:18412397-18412517 68 1.69e-05 Aacgcactca cacacaca gactcataca chr3L:11291298-11291418 33 1.69e-05 GGCACAAAAA CACACACA AAAGTCGATG chr3R:30191201-30191321 84 1.69e-05 CACCTCACCT CACACACA CGCTCGAGCA chr2R:7626425-7626545 88 1.69e-05 CGCTCCCAGG cacacaca tacacacacg chr3L:19813452-19813572 84 1.69e-05 ATAAATCAAA CACACACA TGTCCGTACA chr3R:31599995-31600115 41 1.69e-05 AACAAATTGC CACACACA CAAACACCAC chrX:16281879-16281999 64 1.69e-05 CCCCCCCACA CACACACA CACCCTACCA chrX:2208826-2208946 103 1.69e-05 ACACTGAAAG CACACACA CTCGCCGCCA chr3L:6707222-6707342 51 3.22e-05 TTAAATCGCC CACATACA CCTCCACGCC chr2R:23935921-23936041 80 3.22e-05 GCTCCCCATC Cacataca tacatacgta chr3R:24283794-24283914 68 4.86e-05 TCCTCCTGGC CAGACACA CCGCAACCAC chr3L:16150278-16150398 9 6.33e-05 ctgagata cagataca gatacaTGCG chr3L:1741751-1741871 88 6.33e-05 TTTCAACGTT CAGATACA TTTTGGCGCT chr3L:19019469-19019589 10 6.33e-05 atacagata cagataca TTCTCATCCC chr3R:24026707-24026827 41 6.33e-05 CTTATAGATA CAGATACA AGACCCCGCG chr3L:9814698-9814818 83 6.33e-05 TCTATAGCTA CAGATACA AATGTATCTA chr2R:7451646-7451766 105 6.33e-05 GTTGTAGTTC CAGATACA GTGATCCA chr3R:20168037-20168157 68 6.33e-05 CATAGACCCA CAGATACA GCCCCAAATA chr2L:19015747-19015867 93 7.97e-05 ACCCCACCCC CACACAGA CGGAGGTCGA chr3R:9770219-9770339 59 7.97e-05 TGATGTAAGG CACACAGA GATCTCTCTC chr3R:11762571-11762691 58 7.97e-05 CTGTAAACAC CACACAGA CTGTGCGGGG chr3L:22888832-22888952 37 1.10e-04 TCCTGCAAGC CACACAAA TATGTGGCCG chr3R:18053100-18053220 63 1.10e-04 ATACAGAAAA CACACAAA ATTGAACGGA chr3L:17948331-17948451 91 1.24e-04 GAGCACGCGG CACATAAA TGAAATTTAT chr2R:21642047-21642167 50 1.40e-04 TCCCGGGTGC CAGACAGA CCCTCCCACT chr2R:9189360-9189480 89 1.54e-04 TCGCCAAAAG CAGATAGA TAGCATTAAT chr2R:9926884-9927004 103 1.86e-04 CCATAATTAT CACAGACA CTCGAGAGCC chr3R:16213397-16213517 86 1.86e-04 TTATGCGACC CACAGACA CCACCGCCCG chr2R:19269728-19269848 68 1.99e-04 AAGCGCTTCA CAGATAAA CAAGCGGCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAYACA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9283731-9283851 1.7e-05 63_[+5]_49 chr3R:18412397-18412517 1.7e-05 67_[+5]_45 chr3L:11291298-11291418 1.7e-05 32_[+5]_80 chr3R:30191201-30191321 1.7e-05 83_[+5]_29 chr2R:7626425-7626545 1.7e-05 87_[+5]_25 chr3L:19813452-19813572 1.7e-05 83_[+5]_29 chr3R:31599995-31600115 1.7e-05 40_[+5]_72 chrX:16281879-16281999 1.7e-05 63_[+5]_49 chrX:2208826-2208946 1.7e-05 102_[+5]_10 chr3L:6707222-6707342 3.2e-05 50_[+5]_62 chr2R:23935921-23936041 3.2e-05 79_[+5]_33 chr3R:24283794-24283914 4.9e-05 67_[+5]_45 chr3L:16150278-16150398 6.3e-05 8_[+5]_104 chr3L:1741751-1741871 6.3e-05 87_[+5]_25 chr3L:19019469-19019589 6.3e-05 9_[+5]_103 chr3R:24026707-24026827 6.3e-05 40_[+5]_72 chr3L:9814698-9814818 6.3e-05 82_[+5]_30 chr2R:7451646-7451766 6.3e-05 104_[+5]_8 chr3R:20168037-20168157 6.3e-05 67_[+5]_45 chr2L:19015747-19015867 8e-05 92_[+5]_20 chr3R:9770219-9770339 8e-05 58_[+5]_54 chr3R:11762571-11762691 8e-05 57_[+5]_55 chr3L:22888832-22888952 0.00011 36_[+5]_76 chr3R:18053100-18053220 0.00011 62_[+5]_50 chr3L:17948331-17948451 0.00012 90_[+5]_22 chr2R:21642047-21642167 0.00014 49_[+5]_63 chr2R:9189360-9189480 0.00015 88_[+5]_24 chr2R:9926884-9927004 0.00019 102_[+5]_10 chr3R:16213397-16213517 0.00019 85_[+5]_27 chr2R:19269728-19269848 0.0002 67_[+5]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAYACA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CASAYACA width=8 seqs=30 chr2R:9283731-9283851 ( 64) CACACACA 1 chr3R:18412397-18412517 ( 68) CACACACA 1 chr3L:11291298-11291418 ( 33) CACACACA 1 chr3R:30191201-30191321 ( 84) CACACACA 1 chr2R:7626425-7626545 ( 88) CACACACA 1 chr3L:19813452-19813572 ( 84) CACACACA 1 chr3R:31599995-31600115 ( 41) CACACACA 1 chrX:16281879-16281999 ( 64) CACACACA 1 chrX:2208826-2208946 ( 103) CACACACA 1 chr3L:6707222-6707342 ( 51) CACATACA 1 chr2R:23935921-23936041 ( 80) CACATACA 1 chr3R:24283794-24283914 ( 68) CAGACACA 1 chr3L:16150278-16150398 ( 9) CAGATACA 1 chr3L:1741751-1741871 ( 88) CAGATACA 1 chr3L:19019469-19019589 ( 10) CAGATACA 1 chr3R:24026707-24026827 ( 41) CAGATACA 1 chr3L:9814698-9814818 ( 83) CAGATACA 1 chr2R:7451646-7451766 ( 105) CAGATACA 1 chr3R:20168037-20168157 ( 68) CAGATACA 1 chr2L:19015747-19015867 ( 93) CACACAGA 1 chr3R:9770219-9770339 ( 59) CACACAGA 1 chr3R:11762571-11762691 ( 58) CACACAGA 1 chr3L:22888832-22888952 ( 37) CACACAAA 1 chr3R:18053100-18053220 ( 63) CACACAAA 1 chr3L:17948331-17948451 ( 91) CACATAAA 1 chr2R:21642047-21642167 ( 50) CAGACAGA 1 chr2R:9189360-9189480 ( 89) CAGATAGA 1 chr2R:9926884-9927004 ( 103) CACAGACA 1 chr3R:16213397-16213517 ( 86) CACAGACA 1 chr2R:19269728-19269848 ( 68) CAGATAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAYACA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1531 E= 1.9e+003 -1155 192 -1155 -1155 204 -1155 -1155 -1155 -1155 126 53 -1155 204 -1155 -1155 -1155 -1155 101 -193 75 204 -1155 -1155 -1155 -87 141 -61 -1155 204 -1155 -1155 -1155 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAYACA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 30 E= 1.9e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.633333 0.366667 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.533333 0.066667 0.400000 1.000000 0.000000 0.000000 0.000000 0.133333 0.700000 0.166667 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CASAYACA MEME-5 regular expression -------------------------------------------------------------------------------- CA[CG]A[CT]ACA -------------------------------------------------------------------------------- Time 31.79 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:23730282-23730402 2.69e-01 120 chr3L:2090010-2090130 4.58e-03 17_[+3(2.62e-05)]_95 chr3L:632136-632256 1.27e-02 29_[+1(1.10e-05)]_83 chr2R:24945417-24945537 3.80e-02 120 chrX:2219381-2219501 1.23e-02 19_[+1(8.04e-05)]_93 chr2R:23724134-23724254 3.07e-01 120 chr2L:6751114-6751234 3.93e-01 120 chr2R:6938222-6938342 7.73e-01 120 chr3L:17045815-17045935 9.93e-01 120 chr3L:17002572-17002692 5.62e-01 120 chr3L:1614530-1614650 1.84e-01 120 chrX:1285393-1285513 6.77e-02 120 chr3L:13519909-13520029 2.40e-03 56_[+2(9.12e-05)]_6_[+1(3.34e-05)]_\ 42 chrX:6356871-6356991 5.69e-02 109_[+2(9.12e-05)]_3 chrX:15441435-15441555 1.90e-01 120 chr3L:9433347-9433467 9.89e-01 120 chr2R:10314832-10314952 6.39e-02 59_[+2(5.22e-05)]_53 chr3R:30174949-30175069 7.14e-02 50_[+1(1.10e-05)]_2_[+1(3.34e-05)]_\ 52 chr2L:8086956-8087076 4.72e-01 120 chr2R:23935921-23936041 2.46e-02 79_[+5(3.22e-05)]_33 chr2L:19012868-19012988 3.26e-02 89_[+1(8.04e-05)]_23 chrX:11556915-11557035 3.02e-01 120 chr3R:31420725-31420845 7.48e-01 120 chrX:15465502-15465622 1.00e+00 120 chr3L:8553275-8553395 3.04e-02 35_[+3(2.62e-05)]_77 chr2R:19269728-19269848 1.29e-05 20_[+2(1.32e-05)]_72_[+1(3.34e-05)]_\ 12 chr3R:21624684-21624804 2.88e-01 120 chr2R:7729861-7729981 2.63e-01 120 chr3R:20604207-20604327 9.97e-01 120 chr3R:20168037-20168157 3.26e-02 67_[+5(6.33e-05)]_45 chr2L:19406569-19406689 4.16e-03 26_[+3(1.27e-05)]_72_[+1(3.34e-05)]_\ 6 chr2R:24399703-24399823 2.30e-03 9_[+4(1.40e-05)]_103 chr2R:7033396-7033516 8.82e-02 120 chr2R:23730483-23730603 8.49e-01 120 chr2R:7451646-7451766 1.17e-01 104_[+5(6.33e-05)]_8 chr2R:10287610-10287730 2.20e-02 120 chr2L:19023985-19024105 3.14e-01 120 chr2R:21642047-21642167 9.42e-02 120 chrX:9108554-9108674 3.97e-03 56_[+3(2.62e-05)]_7_[+2(9.12e-05)]_\ 41 chr2R:6812482-6812602 5.59e-01 120 chr2R:17728731-17728851 3.33e-01 120 chr3L:20387557-20387677 5.63e-02 120 chr3L:9814698-9814818 8.13e-02 82_[+5(6.33e-05)]_30 chr2L:19404967-19405087 4.94e-01 120 chrX:2208826-2208946 3.60e-02 102_[+5(1.69e-05)]_10 chr2R:7063563-7063683 7.87e-03 25_[+2(5.22e-05)]_70_[+4(1.40e-05)]_\ 9 chrX:2036613-2036733 7.52e-01 120 chr3R:15177363-15177483 1.69e-04 38_[+2(9.12e-05)]_48_[+3(2.62e-05)]_\ 18 chr3R:12259133-12259253 7.71e-03 120 chr3R:17704035-17704155 1.50e-01 69_[+2(9.12e-05)]_43 chrX:18626081-18626201 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chr2R:13006574-13006694 5.83e-02 120 chr3R:22754580-22754700 8.58e-01 120 chr3R:9774363-9774483 3.64e-02 22_[+3(1.27e-05)]_90 chr2R:8336160-8336280 6.82e-01 120 chr3R:11968225-11968345 2.79e-01 120 chr2R:12438796-12438916 4.59e-01 120 chr3L:1968027-1968147 7.52e-01 120 chr2L:18995873-18995993 3.55e-01 120 chr3R:20837363-20837483 2.40e-03 120 chr3R:18412397-18412517 2.83e-04 65_[+5(1.69e-05)]_35_[+4(2.86e-05)]_\ 4 chr3L:15959032-15959152 2.62e-01 120 chr3L:20386084-20386204 2.20e-01 120 chr3L:17991170-17991290 8.29e-01 120 chr2R:13009351-13009471 5.22e-03 5_[+3(6.28e-05)]_10_[+1(8.04e-05)]_\ 89 chrX:13322567-13322687 7.17e-01 120 chr2R:12973065-12973185 1.17e-01 47_[+3(2.62e-05)]_65 chr2R:9283731-9283851 4.09e-03 12_[+4(2.86e-05)]_43_[+5(1.69e-05)]_\ 49 chrX:9868685-9868805 5.76e-02 120 chr3L:17003643-17003763 1.87e-02 78_[+2(1.32e-05)]_34 chr3L:19901657-19901777 5.41e-01 120 chr3L:22838088-22838208 1.70e-04 61_[+2(2.51e-05)]_38_[+1(2.28e-05)]_\ 5 chr2R:18807295-18807415 6.72e-01 120 chr3R:9883673-9883793 4.88e-03 35_[+1(1.10e-05)]_60_[+3(6.28e-05)]_\ 9 chr3L:8094807-8094927 8.38e-01 120 chr2R:15559415-15559535 5.60e-01 120 chr3R:5081845-5081965 5.53e-03 78_[+4(2.86e-05)]_34 chr2R:9610444-9610564 8.58e-02 120 chrX:13280373-13280493 1.38e-03 32_[+1(8.04e-05)]_80 chr2R:12998624-12998744 6.70e-01 120 chr2R:15733341-15733461 9.80e-01 120 chr2R:6149770-6149890 7.65e-01 120 chr3R:9529537-9529657 2.81e-02 120 chr2L:20773629-20773749 9.13e-04 [+1(1.10e-05)]_112 chr3R:16252049-16252169 8.00e-01 120 chr3L:16958688-16958808 8.12e-01 120 chr3R:23764086-23764206 7.26e-02 25_[+3(5.07e-05)]_87 chr3R:16987686-16987806 9.06e-01 120 chr2L:1656957-1657077 3.26e-02 8_[+2(9.12e-05)]_63_[+2(2.51e-05)]_\ 13_[+2(2.51e-05)]_12 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************