******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10462.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:13235925-13236045 1.0000 120 chr3R:30000435-30000555 1.0000 120 chr2L:21220583-21220703 1.0000 120 chr3R:13699543-13699663 1.0000 120 chr2L:20066247-20066367 1.0000 120 chr2R:15680153-15680273 1.0000 120 chr2R:19630654-19630774 1.0000 120 chrX:5048077-5048197 1.0000 120 chr3R:31458023-31458143 1.0000 120 chrX:12765229-12765349 1.0000 120 chr2L:17477885-17478005 1.0000 120 chr3R:15249856-15249976 1.0000 120 chr3L:21131609-21131729 1.0000 120 chrX:14955309-14955429 1.0000 120 chr2L:19735859-19735979 1.0000 120 chr2R:12665847-12665967 1.0000 120 chr2R:11219218-11219338 1.0000 120 chr3R:11949562-11949682 1.0000 120 chr3R:17666236-17666356 1.0000 120 chr3R:30386955-30387075 1.0000 120 chr2R:7939125-7939245 1.0000 120 chr2L:13021556-13021676 1.0000 120 chr2L:7991532-7991652 1.0000 120 chrX:3704260-3704380 1.0000 120 chrX:1289171-1289291 1.0000 120 chrX:796736-796856 1.0000 120 chr3R:19648701-19648821 1.0000 120 chr3R:9516430-9516550 1.0000 120 chr2L:5093832-5093952 1.0000 120 chr2R:11219421-11219541 1.0000 120 chr3L:11586813-11586933 1.0000 120 chr3R:9412237-9412357 1.0000 120 chr3L:16808269-16808389 1.0000 120 chrX:1517669-1517789 1.0000 120 chrX:3173216-3173336 1.0000 120 chr2R:9132411-9132531 1.0000 120 chrX:15870006-15870126 1.0000 120 chrX:19201785-19201905 1.0000 120 chr3L:20427744-20427864 1.0000 120 chr2R:8051941-8052061 1.0000 120 chr2R:12636532-12636652 1.0000 120 chr2L:9437216-9437336 1.0000 120 chr3R:30765661-30765781 1.0000 120 chr3L:754735-754855 1.0000 120 chr3L:4976155-4976275 1.0000 120 chr2R:16580796-16580916 1.0000 120 chrX:4956253-4956373 1.0000 120 chr2R:9660199-9660319 1.0000 120 chr2R:16196277-16196397 1.0000 120 chr3L:4263644-4263764 1.0000 120 chr3R:30058171-30058291 1.0000 120 chrX:5560566-5560686 1.0000 120 chr3R:17653737-17653857 1.0000 120 chrX:3968863-3968983 1.0000 120 chr3R:7187645-7187765 1.0000 120 chr2L:540982-541102 1.0000 120 chr3L:11825727-11825847 1.0000 120 chr2R:15922484-15922604 1.0000 120 chr3L:9137679-9137799 1.0000 120 chr2R:7447388-7447508 1.0000 120 chr3R:23923122-23923242 1.0000 120 chr3R:10626153-10626273 1.0000 120 chr3R:23315800-23315920 1.0000 120 chr3L:8968426-8968546 1.0000 120 chrX:8152252-8152372 1.0000 120 chr3L:2884524-2884644 1.0000 120 chr3L:19100358-19100478 1.0000 120 chr3L:5964563-5964683 1.0000 120 chr2R:10075679-10075799 1.0000 120 chr3L:1352201-1352321 1.0000 120 chr3R:19508866-19508986 1.0000 120 chr2R:8893539-8893659 1.0000 120 chr3L:9402422-9402542 1.0000 120 chr3R:15792522-15792642 1.0000 120 chr2R:15919852-15919972 1.0000 120 chr3R:31793780-31793900 1.0000 120 chr2R:20836287-20836407 1.0000 120 chr3R:5660186-5660306 1.0000 120 chr2L:8521812-8521932 1.0000 120 chrX:10365097-10365217 1.0000 120 chr3L:6605999-6606119 1.0000 120 chr3L:17238497-17238617 1.0000 120 chr3R:15287813-15287933 1.0000 120 chrX:4005162-4005282 1.0000 120 chr3L:15646335-15646455 1.0000 120 chr2R:10568211-10568331 1.0000 120 chr2L:6338645-6338765 1.0000 120 chrX:19763586-19763706 1.0000 120 chr2L:6595180-6595300 1.0000 120 chr3L:18357738-18357858 1.0000 120 chr2L:3819027-3819147 1.0000 120 chrX:8141604-8141724 1.0000 120 chr3L:4262588-4262708 1.0000 120 chrX:759225-759345 1.0000 120 chr2L:12109134-12109254 1.0000 120 chr3L:15835386-15835506 1.0000 120 chr2R:22382946-22383066 1.0000 120 chr3R:9793151-9793271 1.0000 120 chr3L:18225025-18225145 1.0000 120 chrX:6937528-6937648 1.0000 120 chr3L:11708631-11708751 1.0000 120 chr2L:10298498-10298618 1.0000 120 chr3R:16282240-16282360 1.0000 120 chr3L:3875145-3875265 1.0000 120 chr3R:6893300-6893420 1.0000 120 chr2L:4055563-4055683 1.0000 120 chr2L:10516854-10516974 1.0000 120 chr3L:14166446-14166566 1.0000 120 chrX:19208211-19208331 1.0000 120 chr2L:20823365-20823485 1.0000 120 chrX:8205973-8206093 1.0000 120 chr2L:5100171-5100291 1.0000 120 chr2L:1108470-1108590 1.0000 120 chr3R:4738659-4738779 1.0000 120 chr3L:1602671-1602791 1.0000 120 chrX:7710923-7711043 1.0000 120 chr2R:24132863-24132983 1.0000 120 chrX:11154058-11154178 1.0000 120 chr3L:2795677-2795797 1.0000 120 chr2R:11619055-11619175 1.0000 120 chr3L:8604387-8604507 1.0000 120 chr2L:7266086-7266206 1.0000 120 chr2L:1214579-1214699 1.0000 120 chr3L:630171-630291 1.0000 120 chr3R:10628408-10628528 1.0000 120 chr3L:5768899-5769019 1.0000 120 chr2R:21090941-21091061 1.0000 120 chrX:13307294-13307414 1.0000 120 chr2R:21685142-21685262 1.0000 120 chr3L:4626023-4626143 1.0000 120 chrX:8491898-8492018 1.0000 120 chr3L:20356704-20356824 1.0000 120 chr3R:18914156-18914276 1.0000 120 chr2L:18895052-18895172 1.0000 120 chr3R:23061290-23061410 1.0000 120 chr3R:5483906-5484026 1.0000 120 chrX:11854945-11855065 1.0000 120 chr2R:11970301-11970421 1.0000 120 chr2L:1164357-1164477 1.0000 120 chr3L:15794425-15794545 1.0000 120 chrX:8295522-8295642 1.0000 120 chr2L:10341367-10341487 1.0000 120 chr3L:22945426-22945546 1.0000 120 chr3L:20630706-20630826 1.0000 120 chr3L:17009840-17009960 1.0000 120 chr2L:8080745-8080865 1.0000 120 chr2L:14236240-14236360 1.0000 120 chr3L:16640557-16640677 1.0000 120 chr3R:23300750-23300870 1.0000 120 chrX:5329416-5329536 1.0000 120 chrX:12925803-12925923 1.0000 120 chrX:20506089-20506209 1.0000 120 chrX:15591768-15591888 1.0000 120 chr3R:5636865-5636985 1.0000 120 chr2R:20091290-20091410 1.0000 120 chr3R:6657459-6657579 1.0000 120 chr3L:8763249-8763369 1.0000 120 chr2R:22640195-22640315 1.0000 120 chr3L:14961213-14961333 1.0000 120 chr3R:21612989-21613109 1.0000 120 chr2L:15248761-15248881 1.0000 120 chr3R:7091982-7092102 1.0000 120 chr3L:21047107-21047227 1.0000 120 chr2L:11417639-11417759 1.0000 120 chr3L:11552007-11552127 1.0000 120 chr3L:7510819-7510939 1.0000 120 chr3R:17681021-17681141 1.0000 120 chr2R:20976914-20977034 1.0000 120 chr3R:11368947-11369067 1.0000 120 chrX:13630461-13630581 1.0000 120 chr3L:6817044-6817164 1.0000 120 chr3L:14956464-14956584 1.0000 120 chr2L:3776016-3776136 1.0000 120 chr2R:6707800-6707920 1.0000 120 chr3L:3814634-3814754 1.0000 120 chrX:2978251-2978371 1.0000 120 chr3R:23303390-23303510 1.0000 120 chr3R:6657680-6657800 1.0000 120 chr3R:25184136-25184256 1.0000 120 chr3L:11708849-11708969 1.0000 120 chr3R:21187073-21187193 1.0000 120 chr3L:6981976-6982096 1.0000 120 chr3L:8424833-8424953 1.0000 120 chr2L:21828530-21828650 1.0000 120 chr3L:14786269-14786389 1.0000 120 chr3R:30812606-30812726 1.0000 120 chr3R:13446696-13446816 1.0000 120 chrX:3068442-3068562 1.0000 120 chr3L:11429788-11429908 1.0000 120 chr3R:16899624-16899744 1.0000 120 chr3R:10521310-10521430 1.0000 120 chr3L:1546739-1546859 1.0000 120 chrX:8624929-8625049 1.0000 120 chr3R:5517466-5517586 1.0000 120 chr3L:8951205-8951325 1.0000 120 chr3L:16054176-16054296 1.0000 120 chr3R:10139982-10140102 1.0000 120 chrX:13254590-13254710 1.0000 120 chr2L:12351058-12351178 1.0000 120 chrX:16103555-16103675 1.0000 120 chr3L:12336423-12336543 1.0000 120 chrX:1517874-1517994 1.0000 120 chr2L:827545-827665 1.0000 120 chr3R:31725854-31725974 1.0000 120 chr2L:974257-974377 1.0000 120 chr3L:13922426-13922546 1.0000 120 chr3R:9065090-9065210 1.0000 120 chrX:18525034-18525154 1.0000 120 chr3L:2265851-2265971 1.0000 120 chr3R:23872926-23873046 1.0000 120 chr3L:5926079-5926199 1.0000 120 chr2L:18505654-18505774 1.0000 120 chr3L:20771201-20771321 1.0000 120 chr2L:19376282-19376402 1.0000 120 chr2L:11338318-11338438 1.0000 120 chr3L:18349452-18349572 1.0000 120 chr2L:19377577-19377697 1.0000 120 chr3L:10847832-10847952 1.0000 120 chr3L:18297483-18297603 1.0000 120 chr2L:7043201-7043321 1.0000 120 chr3R:23931489-23931609 1.0000 120 chr2R:18330491-18330611 1.0000 120 chr2R:23176789-23176909 1.0000 120 chr3R:4846910-4847030 1.0000 120 chr2L:19058957-19059077 1.0000 120 chr2R:8615308-8615428 1.0000 120 chr3R:6667392-6667512 1.0000 120 chr2R:9087736-9087856 1.0000 120 chr3R:6791399-6791519 1.0000 120 chr4:406944-407064 1.0000 120 chr2L:11189205-11189325 1.0000 120 chr2L:7220098-7220218 1.0000 120 chr3R:4378628-4378748 1.0000 120 chr3R:19877565-19877685 1.0000 120 chrX:19643239-19643359 1.0000 120 chr2L:17583101-17583221 1.0000 120 chr2L:13838823-13838943 1.0000 120 chr3R:22260301-22260421 1.0000 120 chr3R:18366385-18366505 1.0000 120 chr2R:8045239-8045359 1.0000 120 chr3L:5813074-5813194 1.0000 120 chr3L:11074567-11074687 1.0000 120 chr2R:12727715-12727835 1.0000 120 chr3R:17551240-17551360 1.0000 120 chr2L:1462184-1462304 1.0000 120 chr2R:22539987-22540107 1.0000 120 chr3L:3868206-3868326 1.0000 120 chr2L:6339638-6339758 1.0000 120 chr2R:15381242-15381362 1.0000 120 chr2L:1980762-1980882 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG10462/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10462.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.325 C 0.186 G 0.177 T 0.313 Background letter frequencies (from file dataset with add-one prior applied): A 0.325 C 0.186 G 0.177 T 0.313 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TAACGGTA MEME-1 width = 8 sites = 57 llr = 509 E-value = 3.2e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif TAACGGTA MEME-1 Description -------------------------------------------------------------------------------- Simplified A :aa::::6 pos.-specific C 1::a::1: probability G ::::aa11 matrix T 9:::::83 bits 2.5 *** 2.3 *** 2.0 *** 1.8 *** Relative 1.5 ***** Entropy 1.3 ****** (12.9 bits) 1.0 ****** 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel TAACGGTA consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACGGTA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7220098-7220218 49 1.96e-05 TCGACCTGTT TAACGGTA AGATGACTAA chrX:8624929-8625049 55 1.96e-05 GGCGACAATT TAACGGTA AGCAACGCGC chr2L:15248761-15248881 76 1.96e-05 TCCCCAAGAT TAACGGTA ACTGGCAAGT chr2R:11619055-11619175 92 1.96e-05 TTAAAGTATG TAACGGTA ATTTTATGAT chr3L:15835386-15835506 73 1.96e-05 TTAAACCACT TAACGGTA CTCGTAATAA chrX:8141604-8141724 35 1.96e-05 ATATTACCTG TAACGGTA CCGGCAACTC chr3R:19508866-19508986 68 1.96e-05 CGGCAGGTAA TAACGGTA CCTACCGGCT chr3L:19100358-19100478 45 1.96e-05 AAAAGTGGGA TAACGGTA ATTTCAAATT chr3L:9137679-9137799 53 1.96e-05 CCCTCTTTGT TAACGGTA CTAGAGGCCA chr2R:15922484-15922604 13 1.96e-05 TAAGTAAAAA TAACGGTA TCAATTATTG chr3L:11586813-11586933 12 1.96e-05 ATTCTCAGGT TAACGGTA AATGGCTGCG chr2L:5093832-5093952 82 1.96e-05 TTTGTGAAAT TAACGGTA TAATTAAGCA chrX:3704260-3704380 90 1.96e-05 TCTTGCAAAG TAACGGTA TTGCTCCTTA chr3R:17666236-17666356 9 1.96e-05 TGTTTAGT TAACGGTA TATTTTGCCG chrX:14955309-14955429 55 1.96e-05 AATGTGAAAG TAACGGTA CAATCGGCAG chr3R:15249856-15249976 61 1.96e-05 CCAGCCACGA TAACGGTA CCGAGATCGC chr2R:15680153-15680273 11 1.96e-05 TACCGTAGCG TAACGGTA TCTTCTGATG chr2L:20066247-20066367 44 1.96e-05 TCACATTGCT TAACGGTA TAGTTGTGAG chr3R:5517466-5517586 92 3.85e-05 TCGCGTGTTT TAACGGTT ATTTCTTATT chrX:12925803-12925923 14 3.85e-05 ggagagagaA TAACGGTT GCAAAAGGAG chrX:5329416-5329536 54 3.85e-05 TAGCTTTTCT TAACGGTT TGTTATTATT chrX:7710923-7711043 12 3.85e-05 ATGCTCGATG TAACGGTT TCGTGTGCAG chrX:759225-759345 48 3.85e-05 ATAAAGTAAC TAACGGTT TCTTTCCATC chr2L:6338645-6338765 31 3.85e-05 AGCAAGAGAA TAACGGTT TCTAGCGAAC chr3L:6605999-6606119 11 3.85e-05 CGCGGCATCA TAACGGTT GATGTATACT chr2R:10075679-10075799 72 3.85e-05 TCCGTTAAAA TAACGGTT TCAAAAGCCT chr3L:8968426-8968546 44 3.85e-05 TTAGTGGCAA TAACGGTT CATAGGCAAA chrX:4956253-4956373 108 3.85e-05 GTTGGTCACC TAACGGTT GTTTT chr2R:16580796-16580916 56 3.85e-05 CTGGTGCAAC TAACGGTT TCGATTACCC chrX:1517669-1517789 109 3.85e-05 ATCCCAAAAC TAACGGTT TTGT chrX:796736-796856 92 3.85e-05 ATAAAGTAAC TAACGGTT TCTCCCCATC chr3R:31458023-31458143 40 3.85e-05 TTTTGCAAAC TAACGGTT GATTCTAAGA chr3R:30000435-30000555 78 3.85e-05 TGTACGTTTC TAACGGTT AAGTGGACGG chr3R:31725854-31725974 14 5.01e-05 ATTTCACACA CAACGGTa aaaaaaataa chr3R:15792522-15792642 44 5.01e-05 CGTTGAAAAG CAACGGTA AACATTAGCT chr3R:23923122-23923242 27 5.01e-05 ATCGATCAGC CAACGGTA TGGCAAGGCT chr3R:17653737-17653857 24 5.01e-05 TGCAACGCTA CAACGGTA CATTGCAGAA chr3L:4976155-4976275 44 5.01e-05 CGACGACTGA CAACGGTA AATGGAAACG chr3R:13699543-13699663 44 5.01e-05 GTGTGCAACT CAACGGTA ATTATTTTAA chr3L:8424833-8424953 32 7.28e-05 CGCCATTTTG TAACGGCA TTTTACATGG chr3L:22945426-22945546 27 7.28e-05 CTGGATCAGA TAACGGGA ACGGTGGCAG chrX:11854945-11855065 111 7.28e-05 GGGAAAAACA TAACGGGA GC chr2R:21685142-21685262 52 7.28e-05 TTTCTTCGCG TAACGGGA ATTTTGAAAT chrX:19208211-19208331 80 7.28e-05 TCTGAGGAAA TAACGGCA TTTAGTCTTA chr2R:12636532-12636652 33 7.28e-05 AAACTAATAA TAACGGCA CACGGCCAGT chr3R:30386955-30387075 64 7.28e-05 GCCGCCATAG TAACGGCA TTTGTTTTCG chr2R:13235925-13236045 80 7.28e-05 GTACAAAAAA TAACGGGA GCATGATGAT chr2R:8051941-8052061 108 8.35e-05 CGTTAGCGGA TAACGGTG GCAAA chrX:11154058-11154178 105 1.17e-04 CGAAGTAATT taacgggt atctgata chr2L:3776016-3776136 33 1.28e-04 TATTTCTAGC TAACGGTC CCTATTTCAA chr2R:19630654-19630774 75 1.28e-04 AGCAGTCAAC TAACGGTC GGCGCAGAGA chr2L:13838823-13838943 74 1.41e-04 ACAACAACAA CAACGGCA GTCAGTTGAA chr3L:4626023-4626143 87 1.48e-04 CCGAGTCGTT CAACGGTG AATTTTAGAG chr2L:974257-974377 67 1.60e-04 GCAAAACAAA TAACGGGG GTTCTTATTG chr2L:5100171-5100291 64 1.60e-04 AACAGCAAGC TAACGGCG CAGATGTTAG chrX:12765229-12765349 84 1.80e-04 CGAACGCCGG TAACGGAA ATTCTCAGCA chr2L:21220583-21220703 77 1.80e-04 ATCATTTGTG TAACGGAA AATGTAAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACGGTA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7220098-7220218 2e-05 48_[+1]_64 chrX:8624929-8625049 2e-05 54_[+1]_58 chr2L:15248761-15248881 2e-05 75_[+1]_37 chr2R:11619055-11619175 2e-05 91_[+1]_21 chr3L:15835386-15835506 2e-05 72_[+1]_40 chrX:8141604-8141724 2e-05 34_[+1]_78 chr3R:19508866-19508986 2e-05 67_[+1]_45 chr3L:19100358-19100478 2e-05 44_[+1]_68 chr3L:9137679-9137799 2e-05 52_[+1]_60 chr2R:15922484-15922604 2e-05 12_[+1]_100 chr3L:11586813-11586933 2e-05 11_[+1]_101 chr2L:5093832-5093952 2e-05 81_[+1]_31 chrX:3704260-3704380 2e-05 89_[+1]_23 chr3R:17666236-17666356 2e-05 8_[+1]_104 chrX:14955309-14955429 2e-05 54_[+1]_58 chr3R:15249856-15249976 2e-05 60_[+1]_52 chr2R:15680153-15680273 2e-05 10_[+1]_102 chr2L:20066247-20066367 2e-05 43_[+1]_69 chr3R:5517466-5517586 3.8e-05 91_[+1]_21 chrX:12925803-12925923 3.8e-05 13_[+1]_99 chrX:5329416-5329536 3.8e-05 53_[+1]_59 chrX:7710923-7711043 3.8e-05 11_[+1]_101 chrX:759225-759345 3.8e-05 47_[+1]_65 chr2L:6338645-6338765 3.8e-05 30_[+1]_82 chr3L:6605999-6606119 3.8e-05 10_[+1]_102 chr2R:10075679-10075799 3.8e-05 71_[+1]_41 chr3L:8968426-8968546 3.8e-05 43_[+1]_69 chrX:4956253-4956373 3.8e-05 107_[+1]_5 chr2R:16580796-16580916 3.8e-05 55_[+1]_57 chrX:1517669-1517789 3.8e-05 108_[+1]_4 chrX:796736-796856 3.8e-05 91_[+1]_21 chr3R:31458023-31458143 3.8e-05 39_[+1]_73 chr3R:30000435-30000555 3.8e-05 77_[+1]_35 chr3R:31725854-31725974 5e-05 13_[+1]_99 chr3R:15792522-15792642 5e-05 43_[+1]_69 chr3R:23923122-23923242 5e-05 26_[+1]_86 chr3R:17653737-17653857 5e-05 23_[+1]_89 chr3L:4976155-4976275 5e-05 43_[+1]_69 chr3R:13699543-13699663 5e-05 43_[+1]_69 chr3L:8424833-8424953 7.3e-05 31_[+1]_81 chr3L:22945426-22945546 7.3e-05 26_[+1]_86 chrX:11854945-11855065 7.3e-05 110_[+1]_2 chr2R:21685142-21685262 7.3e-05 51_[+1]_61 chrX:19208211-19208331 7.3e-05 79_[+1]_33 chr2R:12636532-12636652 7.3e-05 32_[+1]_80 chr3R:30386955-30387075 7.3e-05 63_[+1]_49 chr2R:13235925-13236045 7.3e-05 79_[+1]_33 chr2R:8051941-8052061 8.4e-05 107_[+1]_5 chrX:11154058-11154178 0.00012 104_[+1]_8 chr2L:3776016-3776136 0.00013 32_[+1]_80 chr2R:19630654-19630774 0.00013 74_[+1]_38 chr2L:13838823-13838943 0.00014 73_[+1]_39 chr3L:4626023-4626143 0.00015 86_[+1]_26 chr2L:974257-974377 0.00016 66_[+1]_46 chr2L:5100171-5100291 0.00016 63_[+1]_49 chrX:12765229-12765349 0.00018 83_[+1]_29 chr2L:21220583-21220703 0.00018 76_[+1]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACGGTA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TAACGGTA width=8 seqs=57 chr2L:7220098-7220218 ( 49) TAACGGTA 1 chrX:8624929-8625049 ( 55) TAACGGTA 1 chr2L:15248761-15248881 ( 76) TAACGGTA 1 chr2R:11619055-11619175 ( 92) TAACGGTA 1 chr3L:15835386-15835506 ( 73) TAACGGTA 1 chrX:8141604-8141724 ( 35) TAACGGTA 1 chr3R:19508866-19508986 ( 68) TAACGGTA 1 chr3L:19100358-19100478 ( 45) TAACGGTA 1 chr3L:9137679-9137799 ( 53) TAACGGTA 1 chr2R:15922484-15922604 ( 13) TAACGGTA 1 chr3L:11586813-11586933 ( 12) TAACGGTA 1 chr2L:5093832-5093952 ( 82) TAACGGTA 1 chrX:3704260-3704380 ( 90) TAACGGTA 1 chr3R:17666236-17666356 ( 9) TAACGGTA 1 chrX:14955309-14955429 ( 55) TAACGGTA 1 chr3R:15249856-15249976 ( 61) TAACGGTA 1 chr2R:15680153-15680273 ( 11) TAACGGTA 1 chr2L:20066247-20066367 ( 44) TAACGGTA 1 chr3R:5517466-5517586 ( 92) TAACGGTT 1 chrX:12925803-12925923 ( 14) TAACGGTT 1 chrX:5329416-5329536 ( 54) TAACGGTT 1 chrX:7710923-7711043 ( 12) TAACGGTT 1 chrX:759225-759345 ( 48) TAACGGTT 1 chr2L:6338645-6338765 ( 31) TAACGGTT 1 chr3L:6605999-6606119 ( 11) TAACGGTT 1 chr2R:10075679-10075799 ( 72) TAACGGTT 1 chr3L:8968426-8968546 ( 44) TAACGGTT 1 chrX:4956253-4956373 ( 108) TAACGGTT 1 chr2R:16580796-16580916 ( 56) TAACGGTT 1 chrX:1517669-1517789 ( 109) TAACGGTT 1 chrX:796736-796856 ( 92) TAACGGTT 1 chr3R:31458023-31458143 ( 40) TAACGGTT 1 chr3R:30000435-30000555 ( 78) TAACGGTT 1 chr3R:31725854-31725974 ( 14) CAACGGTA 1 chr3R:15792522-15792642 ( 44) CAACGGTA 1 chr3R:23923122-23923242 ( 27) CAACGGTA 1 chr3R:17653737-17653857 ( 24) CAACGGTA 1 chr3L:4976155-4976275 ( 44) CAACGGTA 1 chr3R:13699543-13699663 ( 44) CAACGGTA 1 chr3L:8424833-8424953 ( 32) TAACGGCA 1 chr3L:22945426-22945546 ( 27) TAACGGGA 1 chrX:11854945-11855065 ( 111) TAACGGGA 1 chr2R:21685142-21685262 ( 52) TAACGGGA 1 chrX:19208211-19208331 ( 80) TAACGGCA 1 chr2R:12636532-12636652 ( 33) TAACGGCA 1 chr3R:30386955-30387075 ( 64) TAACGGCA 1 chr2R:13235925-13236045 ( 80) TAACGGGA 1 chr2R:8051941-8052061 ( 108) TAACGGTG 1 chrX:11154058-11154178 ( 105) TAACGGGT 1 chr2L:3776016-3776136 ( 33) TAACGGTC 1 chr2R:19630654-19630774 ( 75) TAACGGTC 1 chr2L:13838823-13838943 ( 74) CAACGGCA 1 chr3L:4626023-4626143 ( 87) CAACGGTG 1 chr2L:974257-974377 ( 67) TAACGGGG 1 chr2L:5100171-5100291 ( 64) TAACGGCG 1 chrX:12765229-12765349 ( 84) TAACGGAA 1 chr2L:21220583-21220703 ( 77) TAACGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACGGTA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.1878 E= 3.2e-029 -1248 -41 -1248 146 162 -1248 -1248 -1248 162 -1248 -1248 -1248 -1248 243 -1248 -1248 -1248 -1248 250 -1248 -1248 -1248 250 -1248 -321 -82 -75 127 92 -241 -133 -15 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACGGTA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 57 E= 3.2e-029 0.000000 0.140351 0.000000 0.859649 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.035088 0.105263 0.105263 0.754386 0.614035 0.035088 0.070175 0.280702 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TAACGGTA MEME-1 regular expression -------------------------------------------------------------------------------- TAACGGT[AT] -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF ACCGTTAK MEME-2 width = 8 sites = 31 llr = 293 E-value = 8.6e-009 ******************************************************************************** -------------------------------------------------------------------------------- Motif ACCGTTAK MEME-2 Description -------------------------------------------------------------------------------- Simplified A a:::::92 pos.-specific C :aa::::1 probability G :::a:::4 matrix T ::::aa14 bits 2.5 *** 2.3 *** 2.0 *** 1.8 ***** Relative 1.5 ****** Entropy 1.3 ****** (13.7 bits) 1.0 ******* 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel ACCGTTAG consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGTTAK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:8521812-8521932 111 1.12e-05 TGTACAAAAT ACCGTTAG CG chr2R:7447388-7447508 45 1.12e-05 CATCCCATAA ACCGTTAG TTGGCTCGAA chr2L:540982-541102 58 1.12e-05 TTGGAAATGA ACCGTTAG CTGGAAGCAT chr2R:8051941-8052061 96 1.12e-05 GATTTTTTCA ACCGTTAG CGGATAACGG chrX:19201785-19201905 87 1.12e-05 CTGGCGATAT ACCGTTAG CTTTTGTTAT chr2R:9132411-9132531 84 1.12e-05 CTGCAGTTGC ACCGTTAG CGTCCCGCGA chr3R:9412237-9412357 56 1.12e-05 TTGTGATTTT ACCGTTAG TTTATCACAA chrX:1289171-1289291 52 1.12e-05 TGGAGAAGAT ACCGTTAG TTTAGCTTAG chr2R:13235925-13236045 18 1.12e-05 TAACAGTCTT ACCGTTAG CAGCAGAGCC chr3L:14786269-14786389 62 3.10e-05 TTGCTCGCGA ACCGTTAT TTACTCGCTC chr2L:1164357-1164477 61 3.10e-05 GGAACTAGAA ACCGTTAT TCGCTGCGCT chr3R:6893300-6893420 64 3.10e-05 CGGCCATGCC ACCGTTAT TTCTGTATCG chr2L:12109134-12109254 96 3.10e-05 GATATTCGTT ACCGTTAT TAAATAATTT chr3R:31793780-31793900 95 3.10e-05 AAAAAATATT ACCGTTAT ATTATTCTGG chr3R:30765661-30765781 64 3.10e-05 GAACCGTTAC ACCGTTAT ATTATGCTGG chr3L:16808269-16808389 59 3.10e-05 AAACTCGAGT ACCGTTAT GACCAATTCT chr2L:17477885-17478005 48 3.10e-05 AATTTGTACT ACCGTTAT TCAGAATACA chr3R:13699543-13699663 73 3.10e-05 ATCCCGAATG ACCGTTAT TTAGGTTTAA chr3R:30000435-30000555 51 3.10e-05 CCTCTGGACT ACCGTTAT TTCGTCAGCT chr2L:21828530-21828650 77 4.28e-05 TCGACAAGAA ACCGTTAC TGCGTACGAT chrX:8152252-8152372 83 4.28e-05 GGCAGAATGT ACCGTTAC ATATCCTTTA chr2L:13021556-13021676 70 4.28e-05 ATACCGCTAT ACCGTTAC GCAGGCTACC chr3R:6657459-6657579 58 6.34e-05 TTTAATTTTT ACCGTTAA CTCAGGAATA chr3L:17009840-17009960 14 6.34e-05 CCGCCAGTTA ACCGTTAA CAGAGCATCC chr3R:9793151-9793271 48 6.34e-05 TTAAGAATAA ACCGTTAA AAAAAACGAT chr2R:8893539-8893659 1 6.34e-05 . ACCGTTAA ACTCGCAGTA chr2L:21220583-21220703 59 6.34e-05 TGCCATATAT ACCGTTAA ATCATTTGTG chrX:5329416-5329536 108 7.42e-05 GTTTCTTGTC ACCGTTTG CAATC chr2L:14236240-14236360 82 7.42e-05 AATTCTGAAA ACCGTTTG TAACCTTAGT chrX:3173216-3173336 55 7.42e-05 CTCGAACCAA ACCGTTTG AAATCTATTA chr2L:4055563-4055683 94 9.33e-05 TCCGTAGCTT ACCGTTTT TTTTTTTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGTTAK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:8521812-8521932 1.1e-05 110_[+2]_2 chr2R:7447388-7447508 1.1e-05 44_[+2]_68 chr2L:540982-541102 1.1e-05 57_[+2]_55 chr2R:8051941-8052061 1.1e-05 95_[+2]_17 chrX:19201785-19201905 1.1e-05 86_[+2]_26 chr2R:9132411-9132531 1.1e-05 83_[+2]_29 chr3R:9412237-9412357 1.1e-05 55_[+2]_57 chrX:1289171-1289291 1.1e-05 51_[+2]_61 chr2R:13235925-13236045 1.1e-05 17_[+2]_95 chr3L:14786269-14786389 3.1e-05 61_[+2]_51 chr2L:1164357-1164477 3.1e-05 60_[+2]_52 chr3R:6893300-6893420 3.1e-05 63_[+2]_49 chr2L:12109134-12109254 3.1e-05 95_[+2]_17 chr3R:31793780-31793900 3.1e-05 94_[+2]_18 chr3R:30765661-30765781 3.1e-05 63_[+2]_49 chr3L:16808269-16808389 3.1e-05 58_[+2]_54 chr2L:17477885-17478005 3.1e-05 47_[+2]_65 chr3R:13699543-13699663 3.1e-05 72_[+2]_40 chr3R:30000435-30000555 3.1e-05 50_[+2]_62 chr2L:21828530-21828650 4.3e-05 76_[+2]_36 chrX:8152252-8152372 4.3e-05 82_[+2]_30 chr2L:13021556-13021676 4.3e-05 69_[+2]_43 chr3R:6657459-6657579 6.3e-05 57_[+2]_55 chr3L:17009840-17009960 6.3e-05 13_[+2]_99 chr3R:9793151-9793271 6.3e-05 47_[+2]_65 chr2R:8893539-8893659 6.3e-05 [+2]_112 chr2L:21220583-21220703 6.3e-05 58_[+2]_54 chrX:5329416-5329536 7.4e-05 107_[+2]_5 chr2L:14236240-14236360 7.4e-05 81_[+2]_31 chrX:3173216-3173336 7.4e-05 54_[+2]_58 chr2L:4055563-4055683 9.3e-05 93_[+2]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGTTAK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF ACCGTTAK width=8 seqs=31 chr2L:8521812-8521932 ( 111) ACCGTTAG 1 chr2R:7447388-7447508 ( 45) ACCGTTAG 1 chr2L:540982-541102 ( 58) ACCGTTAG 1 chr2R:8051941-8052061 ( 96) ACCGTTAG 1 chrX:19201785-19201905 ( 87) ACCGTTAG 1 chr2R:9132411-9132531 ( 84) ACCGTTAG 1 chr3R:9412237-9412357 ( 56) ACCGTTAG 1 chrX:1289171-1289291 ( 52) ACCGTTAG 1 chr2R:13235925-13236045 ( 18) ACCGTTAG 1 chr3L:14786269-14786389 ( 62) ACCGTTAT 1 chr2L:1164357-1164477 ( 61) ACCGTTAT 1 chr3R:6893300-6893420 ( 64) ACCGTTAT 1 chr2L:12109134-12109254 ( 96) ACCGTTAT 1 chr3R:31793780-31793900 ( 95) ACCGTTAT 1 chr3R:30765661-30765781 ( 64) ACCGTTAT 1 chr3L:16808269-16808389 ( 59) ACCGTTAT 1 chr2L:17477885-17478005 ( 48) ACCGTTAT 1 chr3R:13699543-13699663 ( 73) ACCGTTAT 1 chr3R:30000435-30000555 ( 51) ACCGTTAT 1 chr2L:21828530-21828650 ( 77) ACCGTTAC 1 chrX:8152252-8152372 ( 83) ACCGTTAC 1 chr2L:13021556-13021676 ( 70) ACCGTTAC 1 chr3R:6657459-6657579 ( 58) ACCGTTAA 1 chr3L:17009840-17009960 ( 14) ACCGTTAA 1 chr3R:9793151-9793271 ( 48) ACCGTTAA 1 chr2R:8893539-8893659 ( 1) ACCGTTAA 1 chr2L:21220583-21220703 ( 59) ACCGTTAA 1 chrX:5329416-5329536 ( 108) ACCGTTTG 1 chr2L:14236240-14236360 ( 82) ACCGTTTG 1 chrX:3173216-3173336 ( 55) ACCGTTTG 1 chr2L:4055563-4055683 ( 94) ACCGTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGTTAK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.13 E= 8.6e-009 162 -1160 -1160 -1160 -1160 243 -1160 -1160 -1160 243 -1160 -1160 -1160 -1160 250 -1160 -1160 -1160 -1160 168 -1160 -1160 -1160 168 142 -1160 -1160 -128 -101 -94 113 18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGTTAK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 31 E= 8.6e-009 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.870968 0.000000 0.000000 0.129032 0.161290 0.096774 0.387097 0.354839 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif ACCGTTAK MEME-2 regular expression -------------------------------------------------------------------------------- ACCGTTA[GT] -------------------------------------------------------------------------------- Time 13.66 secs. ******************************************************************************** ******************************************************************************** MOTIF TSGCWGCV MEME-3 width = 8 sites = 41 llr = 346 E-value = 5.3e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif TSGCWGCV MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:::5::2 pos.-specific C 14:a::a2 probability G 26a:1a:4 matrix T 5:::4::1 bits 2.5 ** ** 2.3 ** ** 2.0 ** ** 1.8 ** ** Relative 1.5 *** ** Entropy 1.3 *** ** (12.2 bits) 1.0 *** ** 0.8 *** ** 0.5 ****** 0.3 ******** 0.0 -------- Multilevel TGGCAGCG consensus C T A sequence C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCWGCV MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:1462184-1462304 7 3.45e-06 GGGAGA TGGCAGCG TGAGGAGTTG chr3L:22945426-22945546 39 3.45e-06 ACGGGAACGG TGGCAGCG AGCCACGGCC chrX:3968863-3968983 54 3.45e-06 ACCACAGGTC TGGCAGCG CAAAAGCTTG chr2R:16196277-16196397 102 3.45e-06 TTTAACGATC TGGCAGCG CTTGTATGAG chr3L:13922426-13922546 3 8.73e-06 TA TGGCTGCG TTCAAATATG chr3L:11586813-11586933 22 8.73e-06 TAACGGTAAA TGGCTGCG AACTCGCATT chr3L:14786269-14786389 86 1.60e-05 GCTCTGCGGA TGGCAGCC CCCTTTTATA chr3L:1546739-1546859 36 2.55e-05 ATTTCCCCAG CGGCAGCG TCATTCCAAT chr2L:1164357-1164477 69 2.55e-05 AAACCGTTAT TCGCTGCG CTGCGAATGG chr3R:11949562-11949682 106 2.55e-05 TGTTACCGCT TCGCTGCG AATGACA chrX:14955309-14955429 67 2.55e-05 ACGGTACAAT CGGCAGCG ACATCGATGT chrX:3068442-3068562 31 3.92e-05 ACAAAGAAAG GGGCAGCC ATGTTAAGCA chr3R:6657459-6657579 20 3.92e-05 TTGCTTGGTG TGGCAGCA CTGTAGCGTA chrX:8491898-8492018 89 3.92e-05 GTGCCCACAG TGGCGGCG AGAAAAATGA chrX:19208211-19208331 10 3.92e-05 TGTTGGGTC TGGCTGCC GCATCATAGC chrX:4956253-4956373 69 3.92e-05 cgaacagaaA TGGCAGCA GGTGGATCAG chr2L:1980762-1980882 83 4.66e-05 GCAGGTGGCA AGGCAGCG ATAGATCGGA chr2L:974257-974377 97 4.66e-05 GGAGCAGCAG AGGCAGCG AGTGAGGAAA chrX:8624929-8625049 69 5.06e-05 GGTAAGCAAC GCGCTGCG TCGCGACATT chr2L:3819027-3819147 26 6.55e-05 TCCCCAATCC TGGCTGCA CTGAAAGAAA chr2R:23176789-23176909 3 9.17e-05 GC TCGCTGCC TCAATTTCCA chr3L:12336423-12336543 41 9.17e-05 AATTAACAGA TGGCAGCT CAGCTACTGC chr2R:24132863-24132983 73 9.17e-05 GTTCACTAGC TCGCAGCA GCGCACGTGA chrX:759225-759345 105 9.17e-05 AAGGCGTAAG GCGCAGCC ATCTTTAA chrX:12765229-12765349 103 9.55e-05 TTCTCAGCAA ACGCAGCG CAAcgtcgtt chr2L:540982-541102 37 9.95e-05 TTTTTCAATA TGGCGGCC TCGTTGGAAA chr2L:19735859-19735979 97 9.95e-05 CCGCTGTATA CCGCTGCG ATCAGAAGAC chr3L:1352201-1352321 20 1.07e-04 GCATTCGCTC AGGCAGCC ATCTTTAAAA chr2R:7939125-7939245 2 1.07e-04 A GGGCTGCA TGCCTGGCAG chr3L:2265851-2265971 45 1.36e-04 CACACTGGTC GCGCAGCA GGGTTCCGCT chr3L:5768899-5769019 32 1.36e-04 ATAAAAAATG TCGCTGCA AGCCTTTCAA chr2R:15922484-15922604 91 1.36e-04 CTTTGAACCA GCGCTGCC AGATATTAAA chrX:19201785-19201905 21 1.36e-04 GTGTTCCCAG TGGCTGCT TTCTTGCGCG chr3R:5517466-5517586 63 1.49e-04 CCTCTCTTTC CCGCAGCC GGAATTGTTT chr3R:19648701-19648821 70 1.68e-04 TCACACTCGC AGGCAGCA AAGCGAACGT chr3R:17666236-17666356 86 1.82e-04 CATGTCTTCT GCGCTGCA TTTCACTGTT chr3R:30386955-30387075 43 2.03e-04 TTGGTAACGT GCGCAGCT CTCGCCGCCA chr3L:9402422-9402542 50 2.40e-04 GAGCGACCGA AGGCAGCT ATCGATTGTT chr3L:8763249-8763369 56 2.62e-04 ACGCTTTGAT CGGCGGCA CATAATACAA chr3R:18914156-18914276 82 2.80e-04 TACTTAAGTT TCGCGGCT TTTTATTAAA chr3L:4976155-4976275 78 2.80e-04 AAACTGGAAC AGGCTGCT AACGAGGCTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCWGCV MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1462184-1462304 3.5e-06 6_[+3]_106 chr3L:22945426-22945546 3.5e-06 38_[+3]_74 chrX:3968863-3968983 3.5e-06 53_[+3]_59 chr2R:16196277-16196397 3.5e-06 101_[+3]_11 chr3L:13922426-13922546 8.7e-06 2_[+3]_110 chr3L:11586813-11586933 8.7e-06 21_[+3]_91 chr3L:14786269-14786389 1.6e-05 85_[+3]_27 chr3L:1546739-1546859 2.5e-05 35_[+3]_77 chr2L:1164357-1164477 2.5e-05 68_[+3]_44 chr3R:11949562-11949682 2.5e-05 105_[+3]_7 chrX:14955309-14955429 2.5e-05 66_[+3]_46 chrX:3068442-3068562 3.9e-05 30_[+3]_82 chr3R:6657459-6657579 3.9e-05 19_[+3]_93 chrX:8491898-8492018 3.9e-05 88_[+3]_24 chrX:19208211-19208331 3.9e-05 9_[+3]_103 chrX:4956253-4956373 3.9e-05 68_[+3]_44 chr2L:1980762-1980882 4.7e-05 82_[+3]_30 chr2L:974257-974377 4.7e-05 96_[+3]_16 chrX:8624929-8625049 5.1e-05 68_[+3]_44 chr2L:3819027-3819147 6.5e-05 25_[+3]_87 chr2R:23176789-23176909 9.2e-05 2_[+3]_110 chr3L:12336423-12336543 9.2e-05 40_[+3]_72 chr2R:24132863-24132983 9.2e-05 72_[+3]_40 chrX:759225-759345 9.2e-05 104_[+3]_8 chrX:12765229-12765349 9.5e-05 102_[+3]_10 chr2L:540982-541102 0.0001 36_[+3]_76 chr2L:19735859-19735979 0.0001 96_[+3]_16 chr3L:1352201-1352321 0.00011 19_[+3]_93 chr2R:7939125-7939245 0.00011 1_[+3]_111 chr3L:2265851-2265971 0.00014 44_[+3]_68 chr3L:5768899-5769019 0.00014 31_[+3]_81 chr2R:15922484-15922604 0.00014 90_[+3]_22 chrX:19201785-19201905 0.00014 20_[+3]_92 chr3R:5517466-5517586 0.00015 62_[+3]_50 chr3R:19648701-19648821 0.00017 69_[+3]_43 chr3R:17666236-17666356 0.00018 85_[+3]_27 chr3R:30386955-30387075 0.0002 42_[+3]_70 chr3L:9402422-9402542 0.00024 49_[+3]_63 chr3L:8763249-8763369 0.00026 55_[+3]_57 chr3R:18914156-18914276 0.00028 81_[+3]_31 chr3L:4976155-4976275 0.00028 77_[+3]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCWGCV MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TSGCWGCV width=8 seqs=41 chr2L:1462184-1462304 ( 7) TGGCAGCG 1 chr3L:22945426-22945546 ( 39) TGGCAGCG 1 chrX:3968863-3968983 ( 54) TGGCAGCG 1 chr2R:16196277-16196397 ( 102) TGGCAGCG 1 chr3L:13922426-13922546 ( 3) TGGCTGCG 1 chr3L:11586813-11586933 ( 22) TGGCTGCG 1 chr3L:14786269-14786389 ( 86) TGGCAGCC 1 chr3L:1546739-1546859 ( 36) CGGCAGCG 1 chr2L:1164357-1164477 ( 69) TCGCTGCG 1 chr3R:11949562-11949682 ( 106) TCGCTGCG 1 chrX:14955309-14955429 ( 67) CGGCAGCG 1 chrX:3068442-3068562 ( 31) GGGCAGCC 1 chr3R:6657459-6657579 ( 20) TGGCAGCA 1 chrX:8491898-8492018 ( 89) TGGCGGCG 1 chrX:19208211-19208331 ( 10) TGGCTGCC 1 chrX:4956253-4956373 ( 69) TGGCAGCA 1 chr2L:1980762-1980882 ( 83) AGGCAGCG 1 chr2L:974257-974377 ( 97) AGGCAGCG 1 chrX:8624929-8625049 ( 69) GCGCTGCG 1 chr2L:3819027-3819147 ( 26) TGGCTGCA 1 chr2R:23176789-23176909 ( 3) TCGCTGCC 1 chr3L:12336423-12336543 ( 41) TGGCAGCT 1 chr2R:24132863-24132983 ( 73) TCGCAGCA 1 chrX:759225-759345 ( 105) GCGCAGCC 1 chrX:12765229-12765349 ( 103) ACGCAGCG 1 chr2L:540982-541102 ( 37) TGGCGGCC 1 chr2L:19735859-19735979 ( 97) CCGCTGCG 1 chr3L:1352201-1352321 ( 20) AGGCAGCC 1 chr2R:7939125-7939245 ( 2) GGGCTGCA 1 chr3L:2265851-2265971 ( 45) GCGCAGCA 1 chr3L:5768899-5769019 ( 32) TCGCTGCA 1 chr2R:15922484-15922604 ( 91) GCGCTGCC 1 chrX:19201785-19201905 ( 21) TGGCTGCT 1 chr3R:5517466-5517586 ( 63) CCGCAGCC 1 chr3R:19648701-19648821 ( 70) AGGCAGCA 1 chr3R:17666236-17666356 ( 86) GCGCTGCA 1 chr3R:30386955-30387075 ( 43) GCGCAGCT 1 chr3L:9402422-9402542 ( 50) AGGCAGCT 1 chr3L:8763249-8763369 ( 56) CGGCGGCA 1 chr3R:18914156-18914276 ( 82) TCGCGGCT 1 chr3L:4976155-4976275 ( 78) AGGCTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCWGCV MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.2744 E= 5.3e-003 -93 -61 14 71 -1200 98 184 -1200 -1200 -1200 250 -1200 -1200 243 -1200 -1200 72 -1200 -86 23 -1200 -1200 250 -1200 -1200 243 -1200 -1200 -41 24 114 -109 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCWGCV MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 5.3e-003 0.170732 0.121951 0.195122 0.512195 0.000000 0.365854 0.634146 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.536585 0.000000 0.097561 0.365854 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.243902 0.219512 0.390244 0.146341 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TSGCWGCV MEME-3 regular expression -------------------------------------------------------------------------------- T[GC]GC[AT]GC[GAC] -------------------------------------------------------------------------------- Time 19.81 secs. ******************************************************************************** ******************************************************************************** MOTIF GNGTTGCC MEME-4 width = 8 sites = 17 llr = 166 E-value = 7.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GNGTTGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :2:::::: pos.-specific C :4:2:1aa probability G a2a119:: matrix T :3:69::: bits 2.5 * * ** 2.3 * * *** 2.0 * * *** 1.8 * * *** Relative 1.5 * * *** Entropy 1.3 * * **** (14.1 bits) 1.0 * * **** 0.8 * ****** 0.5 * ****** 0.3 ******** 0.0 -------- Multilevel GCGTTGCC consensus T C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNGTTGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12336423-12336543 9 3.50e-06 ACGACAAA GCGTTGCC ACATGGATAG chr3L:630171-630291 4 3.50e-06 GCG GCGTTGCC AGATTGTCAT chr3R:9412237-9412357 95 3.50e-06 GAATTTGATG GCGTTGCC ACTTGGCGGT chr2R:11970301-11970421 70 8.90e-06 AGTAAGTTTA GGGTTGCC AAGGCTTGCA chr3L:19100358-19100478 20 8.90e-06 TAGTGTTCTA GGGTTGCC AACATCAAAA chr2R:7939125-7939245 19 8.90e-06 ATGCCTGGCA GGGTTGCC AGCTCACTGC chr3R:9516430-9516550 108 1.48e-05 TAACAGGACA GTGTTGCC GAGCT chrX:8491898-8492018 76 1.87e-05 TTTAACAGTA GCGGTGCC CACAGTGGCG chr3L:11708631-11708751 26 2.22e-05 TGCTGCGTAA GTGCTGCC GGATCGAGCG chr2R:12636532-12636652 49 2.22e-05 CACACGGCCA GTGCTGCC ATTCATAGTA chrX:10365097-10365217 40 2.83e-05 GGTGGCAAAC GAGTTGCC AGCTTGTTGT chr2L:13021556-13021676 24 2.83e-05 TCGTTTCACA GAGTTGCC GTATCTTGAA chr2R:11219421-11219541 37 3.58e-05 TTCAAATCCA GAGCTGCC ACCTGATTCA chr3L:16640557-16640677 110 4.03e-05 GTTTATGTTT GTGGTGCC ATG chrX:19201785-19201905 34 4.03e-05 CTGCTTTCTT GCGCGGCC TGGTCGCACT chr3L:9402422-9402542 8 4.55e-05 CCAGACA GTGTGGCC GTTGCCTAAA chr2L:7991532-7991652 69 6.03e-05 CGCATCGACT GCGTTCCC GTTATTGGCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNGTTGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12336423-12336543 3.5e-06 8_[+4]_104 chr3L:630171-630291 3.5e-06 3_[+4]_109 chr3R:9412237-9412357 3.5e-06 94_[+4]_18 chr2R:11970301-11970421 8.9e-06 69_[+4]_43 chr3L:19100358-19100478 8.9e-06 19_[+4]_93 chr2R:7939125-7939245 8.9e-06 18_[+4]_94 chr3R:9516430-9516550 1.5e-05 107_[+4]_5 chrX:8491898-8492018 1.9e-05 75_[+4]_37 chr3L:11708631-11708751 2.2e-05 25_[+4]_87 chr2R:12636532-12636652 2.2e-05 48_[+4]_64 chrX:10365097-10365217 2.8e-05 39_[+4]_73 chr2L:13021556-13021676 2.8e-05 23_[+4]_89 chr2R:11219421-11219541 3.6e-05 36_[+4]_76 chr3L:16640557-16640677 4e-05 109_[+4]_3 chrX:19201785-19201905 4e-05 33_[+4]_79 chr3L:9402422-9402542 4.6e-05 7_[+4]_105 chr2L:7991532-7991652 6e-05 68_[+4]_44 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNGTTGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GNGTTGCC width=8 seqs=17 chr3L:12336423-12336543 ( 9) GCGTTGCC 1 chr3L:630171-630291 ( 4) GCGTTGCC 1 chr3R:9412237-9412357 ( 95) GCGTTGCC 1 chr2R:11970301-11970421 ( 70) GGGTTGCC 1 chr3L:19100358-19100478 ( 20) GGGTTGCC 1 chr2R:7939125-7939245 ( 19) GGGTTGCC 1 chr3R:9516430-9516550 ( 108) GTGTTGCC 1 chrX:8491898-8492018 ( 76) GCGGTGCC 1 chr3L:11708631-11708751 ( 26) GTGCTGCC 1 chr2R:12636532-12636652 ( 49) GTGCTGCC 1 chrX:10365097-10365217 ( 40) GAGTTGCC 1 chr2L:13021556-13021676 ( 24) GAGTTGCC 1 chr2R:11219421-11219541 ( 37) GAGCTGCC 1 chr3L:16640557-16640677 ( 110) GTGGTGCC 1 chrX:19201785-19201905 ( 34) GCGCGGCC 1 chr3L:9402422-9402542 ( 8) GTGTGGCC 1 chr2L:7991532-7991652 ( 69) GCGTTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNGTTGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0632 E= 7.2e+001 -1073 -1073 250 -1073 -88 92 0 -9 -1073 -1073 250 -1073 -1073 34 -59 105 -1073 -1073 -59 150 -1073 -166 241 -1073 -1073 243 -1073 -1073 -1073 243 -1073 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNGTTGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 7.2e+001 0.000000 0.000000 1.000000 0.000000 0.176471 0.352941 0.176471 0.294118 0.000000 0.000000 1.000000 0.000000 0.000000 0.235294 0.117647 0.647059 0.000000 0.000000 0.117647 0.882353 0.000000 0.058824 0.941176 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GNGTTGCC MEME-4 regular expression -------------------------------------------------------------------------------- G[CT]G[TC]TGCC -------------------------------------------------------------------------------- Time 25.88 secs. ******************************************************************************** ******************************************************************************** MOTIF AGCAGGCA MEME-5 width = 8 sites = 17 llr = 163 E-value = 7.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif AGCAGGCA MEME-5 Description -------------------------------------------------------------------------------- Simplified A 9::8:::9 pos.-specific C :19:::a: probability G 191:a8:: matrix T 1::2:2:1 bits 2.5 * * 2.3 * * 2.0 ** * * 1.8 ** *** Relative 1.5 ** *** Entropy 1.3 ** **** (13.8 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel AGCAGGCA consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGGCA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19208211-19208331 25 6.59e-06 GCCGCATCAT AGCAGGCA GCTTTCGTCA chr2L:10298498-10298618 37 6.59e-06 GGAGTGATGT AGCAGGCA GAATTTGAAT chr3R:9793151-9793271 88 6.59e-06 ACCATATGAT AGCAGGCA CAAAACGCGT chrX:1289171-1289291 113 6.59e-06 TCCAGTTGTC AGCAGGCA chr2R:12665847-12665967 76 6.59e-06 CAAGCTTTTA AGCAGGCA ACTGAACCAA chrX:19643239-19643359 60 1.29e-05 AAAATAGCCA AGCTGGCA TCCCTGCCAC chrX:1517874-1517994 18 1.29e-05 TCGATCAGTC AGCTGGCA GTTGCTACGG chrX:15591768-15591888 109 1.92e-05 GGAAATAAAC AGGAGGCA CTGC chrX:759225-759345 1 4.13e-05 . ACCAGGCA AACAAAAATT chr3R:15287813-15287933 86 4.13e-05 CAAGTGCGCT AGCAGTCA GCCTTGGACA chr3L:6605999-6606119 99 4.13e-05 GCCAGCTTTT GGCAGGCA CTGATTTCGG chr3L:16808269-16808389 25 4.13e-05 TTAAAATCCA AGCAGTCA AAAGCTGCAA chrX:796736-796856 45 4.13e-05 GTGGCTGAAC ACCAGGCA AACAAAAATT chr2R:19630654-19630774 65 4.13e-05 CGAGAGAGAA AGCAGTCA ACTAACGGTC chr3L:3868206-3868326 92 4.77e-05 TTTCTCCCAG TGCAGGCA TCAAGTGAGG chr3R:17551240-17551360 23 5.40e-05 GTATAAAAAC AGCAGGCT TGGGAACTTA chr2L:1980762-1980882 75 6.01e-05 AAACTATCGC AGGTGGCA AGGCAGCGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGGCA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19208211-19208331 6.6e-06 24_[+5]_88 chr2L:10298498-10298618 6.6e-06 36_[+5]_76 chr3R:9793151-9793271 6.6e-06 87_[+5]_25 chrX:1289171-1289291 6.6e-06 112_[+5] chr2R:12665847-12665967 6.6e-06 75_[+5]_37 chrX:19643239-19643359 1.3e-05 59_[+5]_53 chrX:1517874-1517994 1.3e-05 17_[+5]_95 chrX:15591768-15591888 1.9e-05 108_[+5]_4 chrX:759225-759345 4.1e-05 [+5]_112 chr3R:15287813-15287933 4.1e-05 85_[+5]_27 chr3L:6605999-6606119 4.1e-05 98_[+5]_14 chr3L:16808269-16808389 4.1e-05 24_[+5]_88 chrX:796736-796856 4.1e-05 44_[+5]_68 chr2R:19630654-19630774 4.1e-05 64_[+5]_48 chr3L:3868206-3868326 4.8e-05 91_[+5]_21 chr3R:17551240-17551360 5.4e-05 22_[+5]_90 chr2L:1980762-1980882 6e-05 74_[+5]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGGCA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AGCAGGCA width=8 seqs=17 chrX:19208211-19208331 ( 25) AGCAGGCA 1 chr2L:10298498-10298618 ( 37) AGCAGGCA 1 chr3R:9793151-9793271 ( 88) AGCAGGCA 1 chrX:1289171-1289291 ( 113) AGCAGGCA 1 chr2R:12665847-12665967 ( 76) AGCAGGCA 1 chrX:19643239-19643359 ( 60) AGCTGGCA 1 chrX:1517874-1517994 ( 18) AGCTGGCA 1 chrX:15591768-15591888 ( 109) AGGAGGCA 1 chrX:759225-759345 ( 1) ACCAGGCA 1 chr3R:15287813-15287933 ( 86) AGCAGTCA 1 chr3L:6605999-6606119 ( 99) GGCAGGCA 1 chr3L:16808269-16808389 ( 25) AGCAGTCA 1 chrX:796736-796856 ( 45) ACCAGGCA 1 chr2R:19630654-19630774 ( 65) AGCAGTCA 1 chr3L:3868206-3868326 ( 92) TGCAGGCA 1 chr3R:17551240-17551360 ( 23) AGCAGGCT 1 chr2L:1980762-1980882 ( 75) AGGTGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGGCA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 7.1e+003 144 -1073 -158 -241 -1073 -66 232 -1073 -1073 225 -59 -1073 134 -1073 -1073 -82 -1073 -1073 250 -1073 -1073 -1073 222 -82 -1073 243 -1073 -1073 153 -1073 -1073 -241 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGGCA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 7.1e+003 0.882353 0.000000 0.058824 0.058824 0.000000 0.117647 0.882353 0.000000 0.000000 0.882353 0.117647 0.000000 0.823529 0.000000 0.000000 0.176471 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.823529 0.176471 0.000000 1.000000 0.000000 0.000000 0.941176 0.000000 0.000000 0.058824 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AGCAGGCA MEME-5 regular expression -------------------------------------------------------------------------------- AGCAGGCA -------------------------------------------------------------------------------- Time 31.92 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:13235925-13236045 3.90e-04 17_[+2(1.12e-05)]_54_[+1(7.28e-05)]_\ 33 chr3R:30000435-30000555 4.19e-03 50_[+2(3.10e-05)]_19_[+1(3.85e-05)]_\ 35 chr2L:21220583-21220703 1.36e-02 58_[+2(6.34e-05)]_54 chr3R:13699543-13699663 1.11e-02 43_[+1(5.01e-05)]_21_[+2(3.10e-05)]_\ 40 chr2L:20066247-20066367 4.88e-03 43_[+1(1.96e-05)]_10_[+1(5.01e-05)]_\ 51 chr2R:15680153-15680273 1.51e-03 10_[+1(1.96e-05)]_102 chr2R:19630654-19630774 7.44e-04 64_[+5(4.13e-05)]_48 chrX:5048077-5048197 7.97e-02 120 chr3R:31458023-31458143 3.00e-02 39_[+1(3.85e-05)]_73 chrX:12765229-12765349 7.33e-04 102_[+3(9.55e-05)]_10 chr2L:17477885-17478005 9.63e-02 47_[+2(3.10e-05)]_37_[+2(3.10e-05)]_\ 20 chr3R:15249856-15249976 6.28e-03 60_[+1(1.96e-05)]_52 chr3L:21131609-21131729 1.33e-01 120 chrX:14955309-14955429 1.31e-03 54_[+1(1.96e-05)]_4_[+3(2.55e-05)]_\ 46 chr2L:19735859-19735979 1.99e-01 96_[+3(9.95e-05)]_16 chr2R:12665847-12665967 1.42e-02 75_[+5(6.59e-06)]_37 chr2R:11219218-11219338 8.64e-02 120 chr3R:11949562-11949682 3.29e-03 105_[+3(2.55e-05)]_7 chr3R:17666236-17666356 5.69e-05 8_[+1(1.96e-05)]_104 chr3R:30386955-30387075 7.01e-03 63_[+1(7.28e-05)]_49 chr2R:7939125-7939245 1.02e-04 18_[+4(8.90e-06)]_94 chr2L:13021556-13021676 1.21e-03 23_[+4(2.83e-05)]_38_[+2(4.28e-05)]_\ 43 chr2L:7991532-7991652 1.25e-02 68_[+4(6.03e-05)]_44 chrX:3704260-3704380 2.93e-02 89_[+1(1.96e-05)]_23 chrX:1289171-1289291 1.41e-04 51_[+2(1.12e-05)]_53_[+5(6.59e-06)] chrX:796736-796856 7.89e-04 44_[+5(4.13e-05)]_39_[+1(3.85e-05)]_\ 21 chr3R:19648701-19648821 3.53e-02 120 chr3R:9516430-9516550 8.55e-03 107_[+4(1.48e-05)]_5 chr2L:5093832-5093952 2.29e-02 81_[+1(1.96e-05)]_31 chr2R:11219421-11219541 6.09e-03 36_[+4(3.58e-05)]_76 chr3L:11586813-11586933 1.34e-03 11_[+1(1.96e-05)]_2_[+3(8.73e-06)]_\ 91 chr3R:9412237-9412357 2.42e-04 24_[+2(6.34e-05)]_23_[+2(1.12e-05)]_\ 31_[+4(3.50e-06)]_18 chr3L:16808269-16808389 3.58e-03 24_[+5(4.13e-05)]_26_[+2(3.10e-05)]_\ 54 chrX:1517669-1517789 5.37e-02 108_[+1(3.85e-05)]_4 chrX:3173216-3173336 1.45e-01 54_[+2(7.42e-05)]_58 chr2R:9132411-9132531 2.98e-02 83_[+2(1.12e-05)]_29 chrX:15870006-15870126 2.44e-01 120 chrX:19201785-19201905 1.14e-05 10_[+4(7.72e-05)]_15_[+4(4.03e-05)]_\ 45_[+2(1.12e-05)]_11_[+2(3.10e-05)]_7 chr3L:20427744-20427864 5.49e-01 120 chr2R:8051941-8052061 2.88e-04 95_[+2(1.12e-05)]_4_[+1(8.35e-05)]_\ 5 chr2R:12636532-12636652 6.84e-04 32_[+1(7.28e-05)]_8_[+4(2.22e-05)]_\ 64 chr2L:9437216-9437336 5.44e-02 120 chr3R:30765661-30765781 7.57e-05 55_[+2(4.28e-05)]_[+2(3.10e-05)]_49 chr3L:754735-754855 9.96e-01 120 chr3L:4976155-4976275 4.78e-03 43_[+1(5.01e-05)]_69 chr2R:16580796-16580916 7.91e-02 55_[+1(3.85e-05)]_57 chrX:4956253-4956373 1.12e-03 68_[+3(3.92e-05)]_31_[+1(3.85e-05)]_\ 5 chr2R:9660199-9660319 9.17e-01 120 chr2R:16196277-16196397 2.90e-04 101_[+3(3.45e-06)]_11 chr3L:4263644-4263764 1.63e-01 120 chr3R:30058171-30058291 1.05e-02 83_[+4(6.75e-05)]_29 chrX:5560566-5560686 9.96e-02 120 chr3R:17653737-17653857 1.65e-02 23_[+1(5.01e-05)]_89 chrX:3968863-3968983 1.48e-03 53_[+3(3.45e-06)]_18_[+3(9.17e-05)]_\ 33 chr3R:7187645-7187765 4.35e-01 120 chr2L:540982-541102 2.75e-04 36_[+3(9.95e-05)]_13_[+2(1.12e-05)]_\ 55 chr3L:11825727-11825847 2.10e-01 120 chr2R:15922484-15922604 5.42e-05 12_[+1(1.96e-05)]_70_[+4(5.57e-06)]_\ 22 chr3L:9137679-9137799 2.45e-02 52_[+1(1.96e-05)]_60 chr2R:7447388-7447508 2.13e-03 44_[+2(1.12e-05)]_68 chr3R:23923122-23923242 1.21e-01 26_[+1(5.01e-05)]_86 chr3R:10626153-10626273 9.94e-01 120 chr3R:23315800-23315920 9.97e-01 120 chr3L:8968426-8968546 8.17e-02 43_[+1(3.85e-05)]_69 chrX:8152252-8152372 2.45e-02 82_[+2(4.28e-05)]_30 chr3L:2884524-2884644 8.68e-01 120 chr3L:19100358-19100478 6.63e-04 19_[+4(8.90e-06)]_17_[+1(1.96e-05)]_\ 68 chr3L:5964563-5964683 9.88e-01 120 chr2R:10075679-10075799 8.80e-02 71_[+1(3.85e-05)]_41 chr3L:1352201-1352321 1.42e-02 120 chr3R:19508866-19508986 1.08e-02 67_[+1(1.96e-05)]_45 chr2R:8893539-8893659 2.48e-03 [+2(6.34e-05)]_41_[+4(9.55e-05)]_63 chr3L:9402422-9402542 2.56e-03 7_[+4(4.55e-05)]_105 chr3R:15792522-15792642 6.87e-02 43_[+1(5.01e-05)]_69 chr2R:15919852-15919972 8.50e-01 120 chr3R:31793780-31793900 1.63e-01 94_[+2(3.10e-05)]_18 chr2R:20836287-20836407 5.51e-01 120 chr3R:5660186-5660306 4.17e-01 120 chr2L:8521812-8521932 5.21e-02 110_[+2(1.12e-05)]_2 chrX:10365097-10365217 4.19e-03 39_[+4(2.83e-05)]_73 chr3L:6605999-6606119 9.31e-04 10_[+1(3.85e-05)]_80_[+5(4.13e-05)]_\ 14 chr3L:17238497-17238617 1.16e-01 53_[+5(8.14e-05)]_59 chr3R:15287813-15287933 4.52e-02 85_[+5(4.13e-05)]_27 chrX:4005162-4005282 5.34e-01 120 chr3L:15646335-15646455 5.99e-01 120 chr2R:10568211-10568331 8.92e-01 120 chr2L:6338645-6338765 9.01e-04 30_[+1(3.85e-05)]_82 chrX:19763586-19763706 5.46e-01 120 chr2L:6595180-6595300 9.96e-01 120 chr3L:18357738-18357858 8.75e-01 120 chr2L:3819027-3819147 3.20e-02 25_[+3(6.55e-05)]_87 chrX:8141604-8141724 3.14e-02 34_[+1(1.96e-05)]_78 chr3L:4262588-4262708 9.46e-01 120 chrX:759225-759345 8.24e-06 [+5(4.13e-05)]_39_[+1(3.85e-05)]_49_\ [+3(9.17e-05)]_8 chr2L:12109134-12109254 4.97e-02 95_[+2(3.10e-05)]_17 chr3L:15835386-15835506 4.03e-02 72_[+1(1.96e-05)]_40 chr2R:22382946-22383066 3.73e-01 120 chr3R:9793151-9793271 6.70e-04 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chr3R:18366385-18366505 2.77e-01 120 chr2R:8045239-8045359 9.99e-01 120 chr3L:5813074-5813194 1.50e-01 120 chr3L:11074567-11074687 7.83e-01 120 chr2R:12727715-12727835 4.50e-02 120 chr3R:17551240-17551360 2.01e-01 22_[+5(5.40e-05)]_90 chr2L:1462184-1462304 6.35e-04 6_[+3(3.45e-06)]_106 chr2R:22539987-22540107 8.30e-01 120 chr3L:3868206-3868326 7.95e-02 91_[+5(4.77e-05)]_21 chr2L:6339638-6339758 2.70e-01 120 chr2R:15381242-15381362 6.01e-01 120 chr2L:1980762-1980882 5.41e-04 23_[+3(9.95e-05)]_43_[+5(6.01e-05)]_\ [+3(4.66e-05)]_30 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************