******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10274.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:15786381-15786501 1.0000 120 chr3L:11337833-11337953 1.0000 120 chr3R:13705660-13705780 1.0000 120 chr3L:22187524-22187644 1.0000 120 chrX:15319869-15319989 1.0000 120 chr2L:19074532-19074652 1.0000 120 chr3R:20990559-20990679 1.0000 120 chrX:13300443-13300563 1.0000 120 chr2R:23701885-23702005 1.0000 120 chr3R:30860696-30860816 1.0000 120 chrX:18613602-18613722 1.0000 120 chr3R:29079133-29079253 1.0000 120 chr2R:23377473-23377593 1.0000 120 chr3L:1580971-1581091 1.0000 120 chrX:19321397-19321517 1.0000 120 chr3R:26228493-26228613 1.0000 120 chrX:4604261-4604381 1.0000 120 chr2L:18568355-18568475 1.0000 120 chrX:18118680-18118800 1.0000 120 chr2L:19506500-19506620 1.0000 120 chr3R:27071033-27071153 1.0000 120 chrX:6625089-6625209 1.0000 120 chrX:10886528-10886648 1.0000 120 chr3R:20318233-20318353 1.0000 120 chrX:19964030-19964150 1.0000 120 chr3L:2536958-2537078 1.0000 120 chr2R:7633435-7633555 1.0000 120 chr2L:13291206-13291326 1.0000 120 chrX:20688180-20688300 1.0000 120 chr3L:21177351-21177471 1.0000 120 chr2L:6551599-6551719 1.0000 120 chr3L:10344983-10345103 1.0000 120 chr2L:14533572-14533692 1.0000 120 chr2L:527157-527277 1.0000 120 chrX:16849183-16849303 1.0000 120 chr2R:23377681-23377801 1.0000 120 chr2R:23633144-23633264 1.0000 120 chrX:6778857-6778977 1.0000 120 chr3L:2762536-2762656 1.0000 120 chrX:9588037-9588157 1.0000 120 chr3R:21888834-21888954 1.0000 120 chr2L:13400505-13400625 1.0000 120 chr2L:13804534-13804654 1.0000 120 chr2L:12025622-12025742 1.0000 120 chr3R:18276817-18276937 1.0000 120 chr2R:15897311-15897431 1.0000 120 chrX:7256743-7256863 1.0000 120 chr2R:7622223-7622343 1.0000 120 chr3R:18443401-18443521 1.0000 120 chr3R:17412557-17412677 1.0000 120 chr2L:6690459-6690579 1.0000 120 chr2L:10938285-10938405 1.0000 120 chrX:11680564-11680684 1.0000 120 chr2R:7618066-7618186 1.0000 120 chr3R:20256323-20256443 1.0000 120 chr2R:22115970-22116090 1.0000 120 chr2R:11263948-11264068 1.0000 120 chr3R:20318443-20318563 1.0000 120 chr2R:9200840-9200960 1.0000 120 chr3L:1043460-1043580 1.0000 120 chr3L:11045149-11045269 1.0000 120 chr2R:22645852-22645972 1.0000 120 chr3R:29511596-29511716 1.0000 120 chr3R:10024480-10024600 1.0000 120 chr2L:4814408-4814528 1.0000 120 chr2L:2800105-2800225 1.0000 120 chr2R:17476481-17476601 1.0000 120 chr2L:20884520-20884640 1.0000 120 chr3R:8008794-8008914 1.0000 120 chrX:9595455-9595575 1.0000 120 chr2L:3123926-3124046 1.0000 120 chr2L:1457258-1457378 1.0000 120 chr3L:11272275-11272395 1.0000 120 chr2L:21304245-21304365 1.0000 120 chrX:13325423-13325543 1.0000 120 chr3L:18046868-18046988 1.0000 120 chr2L:2735044-2735164 1.0000 120 chr3L:17615038-17615158 1.0000 120 chrX:19324679-19324799 1.0000 120 chr3R:26228699-26228819 1.0000 120 chr3L:2118864-2118984 1.0000 120 chrX:19321598-19321718 1.0000 120 chrX:12923658-12923778 1.0000 120 chr2R:6548277-6548397 1.0000 120 chr3R:14654659-14654779 1.0000 120 chr3R:17412758-17412878 1.0000 120 chrX:7961135-7961255 1.0000 120 chr2R:18816507-18816627 1.0000 120 chr2L:3896321-3896441 1.0000 120 chr2R:17285417-17285537 1.0000 120 chrX:6040937-6041057 1.0000 120 chr2R:7917479-7917599 1.0000 120 chr2R:9862264-9862384 1.0000 120 chr2R:17477032-17477152 1.0000 120 chr3R:21889040-21889160 1.0000 120 chr3R:9171437-9171557 1.0000 120 chr3L:3415926-3416046 1.0000 120 chr2L:7249777-7249897 1.0000 120 chr3L:15531695-15531815 1.0000 120 chr3R:16151630-16151750 1.0000 120 chr3L:11325285-11325405 1.0000 120 chr3R:7188175-7188295 1.0000 120 chr2L:7578371-7578491 1.0000 120 chr2L:2133118-2133238 1.0000 120 chr3R:30062661-30062781 1.0000 120 chr2R:18045533-18045653 1.0000 120 chrX:2886106-2886226 1.0000 120 chr2L:1457460-1457580 1.0000 120 chr3R:20291885-20292005 1.0000 120 chr2L:7871399-7871519 1.0000 120 chr3R:15580809-15580929 1.0000 120 chr3R:16051471-16051591 1.0000 120 chr3L:19561207-19561327 1.0000 120 chrX:17799183-17799303 1.0000 120 chrX:9595663-9595783 1.0000 120 chr2R:15215554-15215674 1.0000 120 chr2L:3896524-3896644 1.0000 120 chr3R:28004076-28004196 1.0000 120 chr2R:9110980-9111100 1.0000 120 chr3R:7967458-7967578 1.0000 120 chr3L:1320741-1320861 1.0000 120 chr3L:4604087-4604207 1.0000 120 chr2R:22314171-22314291 1.0000 120 chr2L:1723237-1723357 1.0000 120 chrX:3444998-3445118 1.0000 120 chr3L:374612-374732 1.0000 120 chr2R:15863760-15863880 1.0000 120 chr2R:7629727-7629847 1.0000 120 chr2L:20264707-20264827 1.0000 120 chr2R:5945557-5945677 1.0000 120 chrX:6041176-6041296 1.0000 120 chr2R:17393389-17393509 1.0000 120 chr3R:11777129-11777249 1.0000 120 chr2L:1122093-1122213 1.0000 120 chrX:8081579-8081699 1.0000 120 chr3R:20976963-20977083 1.0000 120 chr2L:11531126-11531246 1.0000 120 chr3R:19633205-19633325 1.0000 120 chr3L:18888390-18888510 1.0000 120 chr2L:9618052-9618172 1.0000 120 chr2L:7202823-7202943 1.0000 120 chr3R:20291334-20291454 1.0000 120 chr3R:18279723-18279843 1.0000 120 chr3L:1517201-1517321 1.0000 120 chr3L:15196203-15196323 1.0000 120 chr3R:18068170-18068290 1.0000 120 chr3R:5659249-5659369 1.0000 120 chr2R:10274186-10274306 1.0000 120 chr2R:18816709-18816829 1.0000 120 chr2R:12997732-12997852 1.0000 120 chrX:6067722-6067842 1.0000 120 chr3R:10862943-10863063 1.0000 120 chr3L:9033672-9033792 1.0000 120 chr3R:11778980-11779100 1.0000 120 chr3L:18402228-18402348 1.0000 120 chr2L:4916153-4916273 1.0000 120 chr3R:23337359-23337479 1.0000 120 chr2L:6819457-6819577 1.0000 120 chr3R:20007564-20007684 1.0000 120 chr3L:11272487-11272607 1.0000 120 chrX:15453260-15453380 1.0000 120 chr3R:24626070-24626190 1.0000 120 chr2L:2133320-2133440 1.0000 120 chr3R:19633005-19633125 1.0000 120 chr3L:9712464-9712584 1.0000 120 chr2L:11039856-11039976 1.0000 120 chr2L:14533773-14533893 1.0000 120 chr2R:8152027-8152147 1.0000 120 chr2L:6819665-6819785 1.0000 120 chr3R:14020127-14020247 1.0000 120 chr2L:10972410-10972530 1.0000 120 chr3R:30013183-30013303 1.0000 120 chr3L:1855468-1855588 1.0000 120 chr2R:11202219-11202339 1.0000 120 chr2R:19627759-19627879 1.0000 120 chr3L:6998865-6998985 1.0000 120 chr3R:21298061-21298181 1.0000 120 chrX:498880-499000 1.0000 120 chr3R:18739846-18739966 1.0000 120 chrX:13676655-13676775 1.0000 120 chr2L:9449016-9449136 1.0000 120 chrX:19578130-19578250 1.0000 120 chr2L:7425804-7425924 1.0000 120 chr3R:24598907-24599027 1.0000 120 chr3R:23148674-23148794 1.0000 120 chr3R:12723050-12723170 1.0000 120 chr3R:12399056-12399176 1.0000 120 chr3R:26952325-26952445 1.0000 120 chrX:16090605-16090725 1.0000 120 chrX:9338488-9338608 1.0000 120 chr3R:22086519-22086639 1.0000 120 chr3L:17049912-17050032 1.0000 120 chr3L:19013978-19014098 1.0000 120 chr2R:22663529-22663649 1.0000 120 chr2R:24877418-24877538 1.0000 120 chr2R:16660208-16660328 1.0000 120 chr3R:27069241-27069361 1.0000 120 chrX:14948832-14948952 1.0000 120 chr2L:6343263-6343383 1.0000 120 chr2R:23713145-23713265 1.0000 120 chrX:17780334-17780454 1.0000 120 chrX:17799396-17799516 1.0000 120 chr2L:6340466-6340586 1.0000 120 chr3R:4977611-4977731 1.0000 120 chrX:14910146-14910266 1.0000 120 chr3R:22066772-22066892 1.0000 120 chr3R:18914074-18914194 1.0000 120 chr3L:18993807-18993927 1.0000 120 chr2L:1723437-1723557 1.0000 120 chr2R:21194240-21194360 1.0000 120 chr3R:13952497-13952617 1.0000 120 chr3R:5033454-5033574 1.0000 120 chr2R:22896225-22896345 1.0000 120 chr3L:17605003-17605123 1.0000 120 chr3L:20385491-20385611 1.0000 120 chrX:17780534-17780654 1.0000 120 chr2L:14499169-14499289 1.0000 120 chr3L:20197214-20197334 1.0000 120 chr3L:5754746-5754866 1.0000 120 chr3L:19202283-19202403 1.0000 120 chrX:4655016-4655136 1.0000 120 chr2R:15352517-15352637 1.0000 120 chr3R:18914316-18914436 1.0000 120 chrX:18685342-18685462 1.0000 120 chr3L:6254869-6254989 1.0000 120 chr2R:23668832-23668952 1.0000 120 chr2R:9711794-9711914 1.0000 120 chrX:618659-618779 1.0000 120 chr3L:7370839-7370959 1.0000 120 chr2L:17037966-17038086 1.0000 120 chr2L:10321628-10321748 1.0000 120 chr2R:21545742-21545862 1.0000 120 chr3R:18914597-18914717 1.0000 120 chr3R:17205696-17205816 1.0000 120 chr3L:17531643-17531763 1.0000 120 chr3R:11980026-11980146 1.0000 120 chr2L:16587827-16587947 1.0000 120 chrX:12906077-12906197 1.0000 120 chrX:5538118-5538238 1.0000 120 chr3R:20265430-20265550 1.0000 120 chrX:18084106-18084226 1.0000 120 chr3R:22447449-22447569 1.0000 120 chr3L:18791778-18791898 1.0000 120 chr3R:7108278-7108398 1.0000 120 chr2R:22799692-22799812 1.0000 120 chr3L:19172204-19172324 1.0000 120 chrX:5894702-5894822 1.0000 120 chrX:618861-618981 1.0000 120 chr3R:10888662-10888782 1.0000 120 chr3R:15581011-15581131 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG10274/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10274.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.284 C 0.215 G 0.215 T 0.287 Background letter frequencies (from file dataset with add-one prior applied): A 0.284 C 0.215 G 0.215 T 0.287 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TVCCCTAC MEME-1 width = 8 sites = 65 llr = 560 E-value = 1.2e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif TVCCCTAC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :4::::8: pos.-specific C 23a9a::a probability G 23:1::2: matrix T 7::::a:: bits 2.2 * * * 2.0 * * * 1.8 * ** * 1.6 **** * Relative 1.3 **** * Entropy 1.1 ****** (12.4 bits) 0.9 ****** 0.7 * ****** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TACCCTAC consensus C G sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVCCCTAC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:12906077-12906197 67 1.42e-05 GAACAGCGAA TACCCTAC ACCGCTGAAA chr3L:20385491-20385611 58 1.42e-05 TGCATCGAAA TACCCTAC TCGTATCGCT chr2R:23713145-23713265 35 1.42e-05 TTTAGTTGGG TACCCTAC GCTACAGAAG chrX:16090605-16090725 42 1.42e-05 CCAACTAAAG TACCCTAC TGTAAAAGCT chr3R:21298061-21298181 30 1.42e-05 GGGTGAAGGA TACCCTAC CGAAAAGGCC chr3R:20976963-20977083 59 1.42e-05 GCCCCGGTGA TACCCTAC GATTATTTAG chr2L:20264707-20264827 97 1.42e-05 CCTCGCCAGA TACCCTAC CCTTCGTCTA chrX:17799183-17799303 25 1.42e-05 GAAGTGTGTA TACCCTAC GGCATGAAAA chr2R:7917479-7917599 43 1.42e-05 GATTGGCCAA TACCCTAC ATTGCAGGGC chr2R:18816507-18816627 44 1.42e-05 TAGACTTTGA TACCCTAC CGACTCTATA chr3R:8008794-8008914 45 1.42e-05 GATTTGTGAA TACCCTAC CTTGCACAAT chr2R:22645852-22645972 57 1.42e-05 GGTACTCAAG TACCCTAC TCACCCCTCG chr2L:12025622-12025742 28 1.42e-05 CTCCGTCGAA TACCCTAC AACGCAGACT chrX:6778857-6778977 58 1.42e-05 GCATCCCAGA TACCCTAC ATACCTCGGT chrX:20688180-20688300 31 1.42e-05 TGCCACGCGA TACCCTAC AACCGAATGG chrX:5538118-5538238 59 3.57e-05 ATTGTTAATA TGCCCTAC AAACAAGCTG chr3L:18993807-18993927 69 3.57e-05 GACTGCTGAG TGCCCTAC ACCTGCCGAC chr3R:18279723-18279843 56 3.57e-05 TGCCCTGGAA TGCCCTAC GTGGAGGAGT chr2R:15863760-15863880 87 3.57e-05 GACTTTGGAA TGCCCTAC ACCTATTCAG chrX:9595663-9595783 52 3.57e-05 GCCTCAGGTA TCCCCTAC TTATTACAAT chr3R:9171437-9171557 85 3.57e-05 GCACAATCTA TCCCCTAC CAAACCCCTT chr3L:18046868-18046988 48 3.57e-05 AAAACTGAAG TGCCCTAC AATCGAGCAT chr3L:11272275-11272395 27 3.57e-05 AATTAGCAGC TCCCCTAC TTATCATCCG chr3L:11045149-11045269 45 3.57e-05 GTCGTCCGAA TGCCCTAC ACTCCACTCC chr3R:17412557-17412677 5 3.57e-05 GGTA TCCCCTAC TGAGAGATAT chr3L:2536958-2537078 46 3.57e-05 TACCGCCAGA TGCCCTAC TGGCCATGGA chr3R:29079133-29079253 19 3.57e-05 GCGGTGATTA TCCCCTAC ACCGAACGCT chrX:15786381-15786501 56 3.57e-05 GACTCGAAAA TCCCCTAC AATGCACTGC chr2R:21545742-21545862 5 7.33e-05 TAAA TGCCCTGC ACAGCTGTCG chr2R:22896225-22896345 60 7.33e-05 GGAGCGTGGA TCCCCTGC ATTTTTGTGG chr2R:24877418-24877538 27 7.33e-05 GATTTGTGTA TCCCCTGC ACTAGATACA chrX:9338488-9338608 1 7.33e-05 . TCCCCTGC TCAGCACGCT chr3L:6998865-6998985 63 7.33e-05 CGAAGCGTGC TCCCCTGC GAAACGAAAA chr3R:10862943-10863063 43 7.33e-05 GTTCTCCAGT CACCCTAC ACACGTGTCG chr3R:20291334-20291454 59 7.33e-05 AACTTTTGTG CACCCTAC TTAGCTGGGG chr2R:7629727-7629847 95 7.33e-05 GAAACTTAAA TGCCCTGC TCAGGGTATA chr2R:9110980-9111100 47 7.33e-05 CCGCGCCGTG CACCCTAC GCTCAAAACA chr2L:4814408-4814528 74 7.33e-05 GAAACCGATA TGCCCTGC TGTAGGGGAT chr3R:29511596-29511716 25 7.33e-05 ATGTGTAGAG CACCCTAC TTAGGAACAC chr2L:13400505-13400625 36 7.33e-05 CCAAATCGCT CACCCTAC CGCTTGGATT chr3L:2762536-2762656 10 7.33e-05 TTTCCCGAG CACCCTAC ACTAAGGAGA chr2R:23633144-23633264 49 7.33e-05 ACTGCGAGTG CACCCTAC TATGGACTGT chr2R:23377473-23377593 51 7.33e-05 CTTAGTTAAG CACCCTAC AGTTTGTTTT chr3L:11337833-11337953 57 7.33e-05 TCAACCGATA TGCCCTGC TCATTGGAAC chr2L:7871399-7871519 45 1.00e-04 CCGGATATTC CGCCCTAC GAATGCGCTA chr2L:2133118-2133238 50 1.00e-04 GAATATCAAA GACCCTAC ACAACAAACT chr3R:18443401-18443521 66 1.00e-04 ACCGTGCGAG CCCCCTAC TTCTCCGATC chr3L:17049912-17050032 59 1.16e-04 TTTTTTAGGA GCCCCTAC CTTTCATCGA chr2L:7202823-7202943 90 1.16e-04 CGACTTCTTG GCCCCTAC TCCATGTACA chr2L:2800105-2800225 54 1.16e-04 ACATGGCTGA GCCCCTAC GTCTGTATGA chr2L:19506500-19506620 24 1.16e-04 CTTGGTAGTA GCCCCTAC TCTTTGGTTG chr2L:6690459-6690579 58 1.30e-04 GTGAATTGAG TACGCTAC GATCAAATGG chrX:19964030-19964150 22 1.30e-04 GGCATGCAGA TACGCTAC CACACCGCCC chrX:17780334-17780454 40 1.60e-04 GGCTGCGATG TGCGCTAC AATGTATGTA chr3L:1855468-1855588 4 1.60e-04 GAC TGCGCTAC AGCACTGGGG chr2L:4916153-4916273 45 1.60e-04 GATCTTGCGC TGCGCTAC GCATAGTTCT chr2R:23701885-23702005 29 1.60e-04 AGTGCGGAAG TGCGCTAC AGCCGAAACC chr2L:527157-527277 86 1.80e-04 CGTTCTATAT GACCCTGC CTTGTGTCTT chr2R:23668832-23668952 3 1.92e-04 GA GCCCCTGC TAATCCGCTC chr2L:10972410-10972530 70 1.92e-04 TAGTTGAGTG GGCCCTGC CGCAACCTTG chr3R:11778980-11779100 44 1.92e-04 CTGGTCCCAG GCCCCTGC TCCCGAAATT chr3R:20990559-20990679 37 1.92e-04 GATTATCTTA GCCCCTGC GCCATAAACG chr3R:24598907-24599027 71 2.03e-04 CGGTCTCCAA TACGCTGC TCCGGTGGAT chr3R:19633005-19633125 84 2.30e-04 GGCGGCACAG CACGCTAC TATGTGCGAC chr3R:18068170-18068290 88 2.30e-04 TGGCAATCGG TGCGCTGC CTTTTCCTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVCCCTAC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:12906077-12906197 1.4e-05 66_[+1]_46 chr3L:20385491-20385611 1.4e-05 57_[+1]_55 chr2R:23713145-23713265 1.4e-05 34_[+1]_78 chrX:16090605-16090725 1.4e-05 41_[+1]_71 chr3R:21298061-21298181 1.4e-05 29_[+1]_83 chr3R:20976963-20977083 1.4e-05 58_[+1]_54 chr2L:20264707-20264827 1.4e-05 96_[+1]_16 chrX:17799183-17799303 1.4e-05 24_[+1]_88 chr2R:7917479-7917599 1.4e-05 42_[+1]_70 chr2R:18816507-18816627 1.4e-05 43_[+1]_69 chr3R:8008794-8008914 1.4e-05 44_[+1]_68 chr2R:22645852-22645972 1.4e-05 56_[+1]_56 chr2L:12025622-12025742 1.4e-05 27_[+1]_85 chrX:6778857-6778977 1.4e-05 57_[+1]_55 chrX:20688180-20688300 1.4e-05 30_[+1]_82 chrX:5538118-5538238 3.6e-05 58_[+1]_54 chr3L:18993807-18993927 3.6e-05 68_[+1]_44 chr3R:18279723-18279843 3.6e-05 55_[+1]_57 chr2R:15863760-15863880 3.6e-05 86_[+1]_26 chrX:9595663-9595783 3.6e-05 51_[+1]_61 chr3R:9171437-9171557 3.6e-05 84_[+1]_28 chr3L:18046868-18046988 3.6e-05 47_[+1]_65 chr3L:11272275-11272395 3.6e-05 26_[+1]_86 chr3L:11045149-11045269 3.6e-05 44_[+1]_68 chr3R:17412557-17412677 3.6e-05 4_[+1]_108 chr3L:2536958-2537078 3.6e-05 45_[+1]_67 chr3R:29079133-29079253 3.6e-05 18_[+1]_94 chrX:15786381-15786501 3.6e-05 55_[+1]_57 chr2R:21545742-21545862 7.3e-05 4_[+1]_108 chr2R:22896225-22896345 7.3e-05 59_[+1]_53 chr2R:24877418-24877538 7.3e-05 26_[+1]_86 chrX:9338488-9338608 7.3e-05 [+1]_112 chr3L:6998865-6998985 7.3e-05 62_[+1]_50 chr3R:10862943-10863063 7.3e-05 42_[+1]_70 chr3R:20291334-20291454 7.3e-05 58_[+1]_54 chr2R:7629727-7629847 7.3e-05 94_[+1]_18 chr2R:9110980-9111100 7.3e-05 46_[+1]_66 chr2L:4814408-4814528 7.3e-05 73_[+1]_39 chr3R:29511596-29511716 7.3e-05 24_[+1]_88 chr2L:13400505-13400625 7.3e-05 35_[+1]_77 chr3L:2762536-2762656 7.3e-05 9_[+1]_103 chr2R:23633144-23633264 7.3e-05 48_[+1]_64 chr2R:23377473-23377593 7.3e-05 50_[+1]_62 chr3L:11337833-11337953 7.3e-05 56_[+1]_56 chr2L:7871399-7871519 0.0001 44_[+1]_68 chr2L:2133118-2133238 0.0001 49_[+1]_63 chr3R:18443401-18443521 0.0001 65_[+1]_47 chr3L:17049912-17050032 0.00012 58_[+1]_54 chr2L:7202823-7202943 0.00012 89_[+1]_23 chr2L:2800105-2800225 0.00012 53_[+1]_59 chr2L:19506500-19506620 0.00012 23_[+1]_89 chr2L:6690459-6690579 0.00013 57_[+1]_55 chrX:19964030-19964150 0.00013 21_[+1]_91 chrX:17780334-17780454 0.00016 39_[+1]_73 chr3L:1855468-1855588 0.00016 3_[+1]_109 chr2L:4916153-4916273 0.00016 44_[+1]_68 chr2R:23701885-23702005 0.00016 28_[+1]_84 chr2L:527157-527277 0.00018 85_[+1]_27 chr2R:23668832-23668952 0.00019 2_[+1]_110 chr2L:10972410-10972530 0.00019 69_[+1]_43 chr3R:11778980-11779100 0.00019 43_[+1]_69 chr3R:20990559-20990679 0.00019 36_[+1]_76 chr3R:24598907-24599027 0.0002 70_[+1]_42 chr3R:19633005-19633125 0.00023 83_[+1]_29 chr3R:18068170-18068290 0.00023 87_[+1]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVCCCTAC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TVCCCTAC width=8 seqs=65 chrX:12906077-12906197 ( 67) TACCCTAC 1 chr3L:20385491-20385611 ( 58) TACCCTAC 1 chr2R:23713145-23713265 ( 35) TACCCTAC 1 chrX:16090605-16090725 ( 42) TACCCTAC 1 chr3R:21298061-21298181 ( 30) TACCCTAC 1 chr3R:20976963-20977083 ( 59) TACCCTAC 1 chr2L:20264707-20264827 ( 97) TACCCTAC 1 chrX:17799183-17799303 ( 25) TACCCTAC 1 chr2R:7917479-7917599 ( 43) TACCCTAC 1 chr2R:18816507-18816627 ( 44) TACCCTAC 1 chr3R:8008794-8008914 ( 45) TACCCTAC 1 chr2R:22645852-22645972 ( 57) TACCCTAC 1 chr2L:12025622-12025742 ( 28) TACCCTAC 1 chrX:6778857-6778977 ( 58) TACCCTAC 1 chrX:20688180-20688300 ( 31) TACCCTAC 1 chrX:5538118-5538238 ( 59) TGCCCTAC 1 chr3L:18993807-18993927 ( 69) TGCCCTAC 1 chr3R:18279723-18279843 ( 56) TGCCCTAC 1 chr2R:15863760-15863880 ( 87) TGCCCTAC 1 chrX:9595663-9595783 ( 52) TCCCCTAC 1 chr3R:9171437-9171557 ( 85) TCCCCTAC 1 chr3L:18046868-18046988 ( 48) TGCCCTAC 1 chr3L:11272275-11272395 ( 27) TCCCCTAC 1 chr3L:11045149-11045269 ( 45) TGCCCTAC 1 chr3R:17412557-17412677 ( 5) TCCCCTAC 1 chr3L:2536958-2537078 ( 46) TGCCCTAC 1 chr3R:29079133-29079253 ( 19) TCCCCTAC 1 chrX:15786381-15786501 ( 56) TCCCCTAC 1 chr2R:21545742-21545862 ( 5) TGCCCTGC 1 chr2R:22896225-22896345 ( 60) TCCCCTGC 1 chr2R:24877418-24877538 ( 27) TCCCCTGC 1 chrX:9338488-9338608 ( 1) TCCCCTGC 1 chr3L:6998865-6998985 ( 63) TCCCCTGC 1 chr3R:10862943-10863063 ( 43) CACCCTAC 1 chr3R:20291334-20291454 ( 59) CACCCTAC 1 chr2R:7629727-7629847 ( 95) TGCCCTGC 1 chr2R:9110980-9111100 ( 47) CACCCTAC 1 chr2L:4814408-4814528 ( 74) TGCCCTGC 1 chr3R:29511596-29511716 ( 25) CACCCTAC 1 chr2L:13400505-13400625 ( 36) CACCCTAC 1 chr3L:2762536-2762656 ( 10) CACCCTAC 1 chr2R:23633144-23633264 ( 49) CACCCTAC 1 chr2R:23377473-23377593 ( 51) CACCCTAC 1 chr3L:11337833-11337953 ( 57) TGCCCTGC 1 chr2L:7871399-7871519 ( 45) CGCCCTAC 1 chr2L:2133118-2133238 ( 50) GACCCTAC 1 chr3R:18443401-18443521 ( 66) CCCCCTAC 1 chr3L:17049912-17050032 ( 59) GCCCCTAC 1 chr2L:7202823-7202943 ( 90) GCCCCTAC 1 chr2L:2800105-2800225 ( 54) GCCCCTAC 1 chr2L:19506500-19506620 ( 24) GCCCCTAC 1 chr2L:6690459-6690579 ( 58) TACGCTAC 1 chrX:19964030-19964150 ( 22) TACGCTAC 1 chrX:17780334-17780454 ( 40) TGCGCTAC 1 chr3L:1855468-1855588 ( 4) TGCGCTAC 1 chr2L:4916153-4916273 ( 45) TGCGCTAC 1 chr2R:23701885-23702005 ( 29) TGCGCTAC 1 chr2L:527157-527277 ( 86) GACCCTGC 1 chr2R:23668832-23668952 ( 3) GCCCCTGC 1 chr2L:10972410-10972530 ( 70) GGCCCTGC 1 chr3R:11778980-11779100 ( 44) GCCCCTGC 1 chr3R:20990559-20990679 ( 37) GCCCCTGC 1 chr3R:24598907-24599027 ( 71) TACGCTGC 1 chr3R:19633005-19633125 ( 84) CACGCTAC 1 chr3R:18068170-18068290 ( 88) TGCGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVCCCTAC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.507 E= 1.2e-029 -1267 -34 -48 124 65 37 37 -1267 -1267 222 -1267 -1267 -1267 200 -63 -1267 -1267 222 -1267 -1267 -1267 -1267 -1267 180 144 -1267 10 -1267 -1267 222 -1267 -1267 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVCCCTAC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 65 E= 1.2e-029 0.000000 0.169231 0.153846 0.676923 0.446154 0.276923 0.276923 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.861538 0.138462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.769231 0.000000 0.230769 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TVCCCTAC MEME-1 regular expression -------------------------------------------------------------------------------- T[ACG]CCCT[AG]C -------------------------------------------------------------------------------- Time 7.44 secs. ******************************************************************************** ******************************************************************************** MOTIF GTAGGGBA MEME-2 width = 8 sites = 91 llr = 691 E-value = 5.5e-023 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTAGGGBA MEME-2 Description -------------------------------------------------------------------------------- Simplified A :19:1:18 pos.-specific C :21:1:4: probability G a1:a7a22 matrix T :6::::3: bits 2.2 * * * 2.0 * * * 1.8 * * * 1.6 * ** * Relative 1.3 * ** * Entropy 1.1 * **** * (11.0 bits) 0.9 * **** * 0.7 * **** * 0.4 * **** * 0.2 ******** 0.0 -------- Multilevel GTAGGGCA consensus TG sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGGGBA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11777129-11777249 40 1.06e-05 CCCTCTGTGT GTAGGGCA TTAGGCGAGG chr3R:26228699-26228819 11 1.06e-05 CCTGGCGTAA GTAGGGCA TGCAAACGCC chr3R:20256323-20256443 58 1.06e-05 ACCAGATCAT GTAGGGCA TTAAAAAACC chr2L:6690459-6690579 75 1.06e-05 CGATCAAATG GTAGGGCA TATAAGTTTC chrX:9588037-9588157 83 1.06e-05 ATGTGCATAC GTAGGGCA TTTGTGAGTT chrX:19578130-19578250 68 2.48e-05 CTAGCTAGGT GTAGGGTA TGCACACGTG chr2R:11202219-11202339 58 2.48e-05 AATTATCATC GTAGGGTA TCAATCTTCA chrX:15453260-15453380 63 2.48e-05 CAATTGTAAC GTAGGGTA TTCGAGGAAA chr3R:20007564-20007684 27 2.48e-05 TTGCATTTAG GTAGGGTA TTTAAATGTA chr3L:4604087-4604207 57 2.48e-05 AAAGCTCCAA GTAGGGTA TCCCCCGGGT chr3R:28004076-28004196 11 2.48e-05 GGCAGGGCGC GTAGGGTA TTCAAGGAAC chr2R:9862264-9862384 62 2.48e-05 CTGAGGAAGT GTAGGGTA TCTGCGGCCG chrX:7961135-7961255 94 2.48e-05 TGAGGGTGAA GTAGGGTA TCCACAGGTC chr3R:10024480-10024600 84 2.48e-05 TTAGGAATGG GTAGGGTA TCAAAACAAC chr2R:7622223-7622343 65 2.48e-05 AGACCCCGAG GTAGGGTA CCATCCAAAC chrX:16849183-16849303 97 2.48e-05 TCTTCCTATT GTAGGGTA TTACTCACGT chr2L:527157-527277 63 2.48e-05 CATCTTTGCT GTAGGGTA TTTCACGTTC chr3R:13705660-13705780 77 2.48e-05 AAACATATAT GTAGGGTA TTAGGAGGAA chr3L:17531643-17531763 77 3.55e-05 GGTGGGAAAA GTAGGGGA TCTACAATTC chr2L:10321628-10321748 78 3.55e-05 TGCCCGATGA GTAGGGGA TTGGTAAATG chr3R:12399056-12399176 64 3.55e-05 ATCACGGCGT GTAGGGGA AAAGGTTGAC chr3L:15196203-15196323 60 3.55e-05 TCCCTTTTTC GTAGGGGA TCTCTCTGCG chr2L:4814408-4814528 83 3.55e-05 ATGCCCTGCT GTAGGGGA TTGAACCCAG chr3R:18276817-18276937 84 3.55e-05 TGGCCGTAAA GTAGGGGA TTCGTTTGGT chr2L:13804534-13804654 18 3.55e-05 AATAGCTTTC GTAGGGGA TTACTGATTC chr2L:16587827-16587947 45 4.34e-05 AATTTAGCGT GCAGGGCA TTTCCGATTT chr3L:6998865-6998985 16 4.34e-05 GGAGCGCATC GCAGGGCA CCCACACGCG chr3R:18068170-18068290 26 4.34e-05 TTCTCTTTCT GCAGGGCA TTGGGCAGCC chr2L:7249777-7249897 54 4.34e-05 GATTCCGAGT GCAGGGCA TTTAGGTTAT chr2R:7917479-7917599 54 4.34e-05 ACCCTACATT GCAGGGCA TGTCCGACCA chr2R:22115970-22116090 69 4.34e-05 ACCTACGAAG GCAGGGCA TGCAAAATGC chr3L:20197214-20197334 59 6.21e-05 ATAGCTTACT GCAGGGTA TGCAATGTCG chr2L:1122093-1122213 53 6.21e-05 GCTGCATGCA GCAGGGTA TTGCAGTTTC chrX:498880-499000 100 7.80e-05 ATTGTTCCTT GGAGGGCA CATACAATTC chr3L:17605003-17605123 64 8.88e-05 TGGCCGAGCT GTAGGGTG CTTGTTGTTG chr2L:6340466-6340586 81 8.88e-05 TTACAAGTGT GTAGGGTG ATACTAGATG chr2L:1723237-1723357 83 8.88e-05 CATTGTGTGT GTAGGGTG CAGGTGAAAA chr2R:22314171-22314291 100 8.88e-05 TGTTTGTACA GTAGGGTG AAACTTCGTG chr2L:10938285-10938405 70 8.88e-05 GGTGCAGGGT GTAGGGTG AGTTCGCAGT chrX:15319869-15319989 73 8.88e-05 CCGCATAATT GTAGGGTG CACAGGATAG chr3R:10888662-10888782 83 1.18e-04 GGTAACAAGT GTAGCGCA AACACTTAAA chr3R:22086519-22086639 36 1.18e-04 AAAACAATCT GTAGCGCA TCAGTTGGTC chr3R:26952325-26952445 71 1.18e-04 CCCTTGCGAT GTAGGGGG TCTAGAGAGC chr3R:14654659-14654779 77 1.18e-04 GGAGTGGCGG GAAGGGCA CTCGAGAATC chr2R:6548277-6548397 78 1.18e-04 CAAATAAAGT GTAGCGCA CCGCGGATGA chrX:18118680-18118800 21 1.18e-04 GGCGACTGCG GAAGGGCA GTGGGTTAGC chr3R:30860696-30860816 22 1.18e-04 TACGACGCTA GAAGGGCA TATACATATA chr2R:21545742-21545862 95 1.43e-04 CATTTTGGGG GGAGGGGA AAATCAGGAC chr2L:2800105-2800225 18 1.43e-04 CGGAAATCTC GGAGGGGA AGACTTTAGG chr2R:17393389-17393509 94 1.85e-04 GGGCAACCGA GTAGAGCA GCGAAATGTC chr3R:15580809-15580929 89 1.85e-04 TTTTTACCAT GTAGAGCA TTAGTTTTAA chr3R:12723050-12723170 92 2.06e-04 AAACGATGGG GAAGGGGA CTCGGTAGTC chr2L:20884520-20884640 88 2.06e-04 AATCAACAAT GTAGCGGA TACCATTTGT chr2R:15897311-15897431 27 2.06e-04 TGTCGGAACT GAAGGGGA TTGGGAGTGC chr3L:19172204-19172324 63 2.36e-04 TCTTTTAGCT GCAGGGTG CCCCGCGAAG chr2R:21194240-21194360 84 2.36e-04 GTAAAAACAC GTAGGGAA CACCTGCTTA chr3R:11778980-11779100 19 2.36e-04 TGCACCGAGT GTCGGGCA TATGACACTG chr2L:12025622-12025742 46 2.36e-04 AACGCAGACT GTCGGGCA GCTTGGCTGC chr3L:2762536-2762656 40 2.36e-04 TGCTCACTGG GTCGGGCA TTTGAGGTCC chr2R:23633144-23633264 11 2.36e-04 tGACATTCGA GCAGGGTG ATCCAATTCG chr2L:6551599-6551719 112 2.36e-04 GAATTAATTT GTAGGGAA T chrX:18613602-18613722 102 2.36e-04 TTTCTAACCT GCAGGGTG ACCAGTGCGT chr3R:20990559-20990679 55 2.36e-04 GCCATAAACG GTCGGGCA TATTGATTTA chrX:14910146-14910266 99 2.50e-04 TTGAACAGGG GCAGGGGG TACGGCATTC chr2L:13400505-13400625 105 2.50e-04 GGATTAGAGA GCAGCGCA ATTAGTTG chr3L:1580971-1581091 80 2.50e-04 GATGCGCTTC GCAGCGCA ACTGAAGTAC chr3R:18914597-18914717 57 2.75e-04 GGGTTTTAGA GTAGAGTA GTATCTAAGA chrX:11680564-11680684 91 2.89e-04 TCTTTGCTTC GTAGAGGA GCTTGGGCAC chrX:13300443-13300563 56 2.89e-04 ATTCTCGATG GTAGAGGA TTGTGGCAGT chr2L:6343263-6343383 84 3.16e-04 ACCTGATAGT GTAGCGCG CACGGAAGAG chr2L:7425804-7425924 62 3.16e-04 GGTACCTGAA GTAGCGCG CGTGGTGGCA chr2R:11263948-11264068 54 3.16e-04 AAAATGTCGT GAAGGGCG AAAGTGGAAC chr3R:27069241-27069361 37 3.45e-04 GAACGTCTGC GTCGGGGA TTAGTAATAG chrX:19324679-19324799 104 3.45e-04 TTCACGAGTC GCAGAGCA CTTGGTTTT chr3L:1517201-1517321 79 3.61e-04 TGATTTGATC GGAGGGTG CACATAGTGG chr3L:10344983-10345103 69 3.61e-04 CATCTCAGGA GGAGGGTG TCTCCTAGTC chr3R:16051471-16051591 72 3.92e-04 GAGCACAGTA GGAGCGCA TCAAAACAAT chr3L:2118864-2118984 75 3.92e-04 GTGGCGTCGA GGAGCGCA GCGACATGGT chrX:7256743-7256863 5 3.92e-04 GCCA GGAGCGCA GCAAGGACAA chr2R:10274186-10274306 64 4.24e-04 TACCATTCTG GTAGAGCG CCCCCGCAGT chr2R:17476481-17476601 108 4.24e-04 GGGTTGCATT GAAGGGTG TGTGC chrX:5538118-5538238 76 4.64e-04 CAAACAAGCT GAAGCGCA TTCCATGTTC chr3R:18914316-18914436 22 4.64e-04 TTATCTGGGT GCAGAGTA AAATTTATTC chr3L:22187524-22187644 65 4.64e-04 ACTTTCACCC GCAGAGTA GGAGACGTAG chr3L:18993807-18993927 38 4.91e-04 GAATGCCACG GCAGAGGA TCGGTGATGC chr3L:3415926-3416046 38 5.27e-04 AAACCGAATC GGAGAGCA ATTTATTTTC chr3R:18914074-18914194 32 5.55e-04 TATACCTTTT GGAGCGGA CATAGGTGAC chr3L:6254869-6254989 33 7.09e-04 AGATGCCAGG GTCGGGGG ATTCCGGCAA chr3R:29511596-29511716 98 7.09e-04 AAGTGCGGTC GAAGGGAA AATATGTAGT chr3R:20318233-20318353 82 7.09e-04 CCAACAGTTC GAAGGGAA TTATAATTAA chr3L:11272275-11272395 66 9.16e-04 ATTGCCAATA GTCGGGAA TGGTGGGTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGGGBA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11777129-11777249 1.1e-05 39_[+2]_73 chr3R:26228699-26228819 1.1e-05 10_[+2]_102 chr3R:20256323-20256443 1.1e-05 57_[+2]_55 chr2L:6690459-6690579 1.1e-05 74_[+2]_38 chrX:9588037-9588157 1.1e-05 82_[+2]_30 chrX:19578130-19578250 2.5e-05 67_[+2]_45 chr2R:11202219-11202339 2.5e-05 57_[+2]_55 chrX:15453260-15453380 2.5e-05 62_[+2]_50 chr3R:20007564-20007684 2.5e-05 26_[+2]_86 chr3L:4604087-4604207 2.5e-05 56_[+2]_56 chr3R:28004076-28004196 2.5e-05 10_[+2]_102 chr2R:9862264-9862384 2.5e-05 61_[+2]_51 chrX:7961135-7961255 2.5e-05 93_[+2]_19 chr3R:10024480-10024600 2.5e-05 83_[+2]_29 chr2R:7622223-7622343 2.5e-05 64_[+2]_48 chrX:16849183-16849303 2.5e-05 96_[+2]_16 chr2L:527157-527277 2.5e-05 62_[+2]_50 chr3R:13705660-13705780 2.5e-05 76_[+2]_36 chr3L:17531643-17531763 3.5e-05 76_[+2]_36 chr2L:10321628-10321748 3.5e-05 77_[+2]_35 chr3R:12399056-12399176 3.5e-05 63_[+2]_49 chr3L:15196203-15196323 3.5e-05 59_[+2]_53 chr2L:4814408-4814528 3.5e-05 82_[+2]_30 chr3R:18276817-18276937 3.5e-05 83_[+2]_29 chr2L:13804534-13804654 3.5e-05 17_[+2]_95 chr2L:16587827-16587947 4.3e-05 44_[+2]_68 chr3L:6998865-6998985 4.3e-05 15_[+2]_97 chr3R:18068170-18068290 4.3e-05 25_[+2]_87 chr2L:7249777-7249897 4.3e-05 53_[+2]_59 chr2R:7917479-7917599 4.3e-05 53_[+2]_59 chr2R:22115970-22116090 4.3e-05 68_[+2]_44 chr3L:20197214-20197334 6.2e-05 58_[+2]_54 chr2L:1122093-1122213 6.2e-05 52_[+2]_60 chrX:498880-499000 7.8e-05 99_[+2]_13 chr3L:17605003-17605123 8.9e-05 63_[+2]_49 chr2L:6340466-6340586 8.9e-05 80_[+2]_32 chr2L:1723237-1723357 8.9e-05 82_[+2]_30 chr2R:22314171-22314291 8.9e-05 99_[+2]_13 chr2L:10938285-10938405 8.9e-05 69_[+2]_43 chrX:15319869-15319989 8.9e-05 72_[+2]_40 chr3R:10888662-10888782 0.00012 82_[+2]_30 chr3R:22086519-22086639 0.00012 35_[+2]_77 chr3R:26952325-26952445 0.00012 70_[+2]_42 chr3R:14654659-14654779 0.00012 76_[+2]_36 chr2R:6548277-6548397 0.00012 77_[+2]_35 chrX:18118680-18118800 0.00012 20_[+2]_92 chr3R:30860696-30860816 0.00012 21_[+2]_91 chr2R:21545742-21545862 0.00014 94_[+2]_18 chr2L:2800105-2800225 0.00014 17_[+2]_95 chr2R:17393389-17393509 0.00018 93_[+2]_19 chr3R:15580809-15580929 0.00018 88_[+2]_24 chr3R:12723050-12723170 0.00021 91_[+2]_21 chr2L:20884520-20884640 0.00021 87_[+2]_25 chr2R:15897311-15897431 0.00021 26_[+2]_86 chr3L:19172204-19172324 0.00024 62_[+2]_50 chr2R:21194240-21194360 0.00024 83_[+2]_29 chr3R:11778980-11779100 0.00024 18_[+2]_94 chr2L:12025622-12025742 0.00024 45_[+2]_67 chr3L:2762536-2762656 0.00024 39_[+2]_73 chr2R:23633144-23633264 0.00024 10_[+2]_102 chr2L:6551599-6551719 0.00024 111_[+2]_1 chrX:18613602-18613722 0.00024 101_[+2]_11 chr3R:20990559-20990679 0.00024 54_[+2]_58 chrX:14910146-14910266 0.00025 98_[+2]_14 chr2L:13400505-13400625 0.00025 104_[+2]_8 chr3L:1580971-1581091 0.00025 79_[+2]_33 chr3R:18914597-18914717 0.00028 56_[+2]_56 chrX:11680564-11680684 0.00029 90_[+2]_22 chrX:13300443-13300563 0.00029 55_[+2]_57 chr2L:6343263-6343383 0.00032 83_[+2]_29 chr2L:7425804-7425924 0.00032 61_[+2]_51 chr2R:11263948-11264068 0.00032 53_[+2]_59 chr3R:27069241-27069361 0.00035 36_[+2]_76 chrX:19324679-19324799 0.00035 103_[+2]_9 chr3L:1517201-1517321 0.00036 78_[+2]_34 chr3L:10344983-10345103 0.00036 68_[+2]_44 chr3R:16051471-16051591 0.00039 71_[+2]_41 chr3L:2118864-2118984 0.00039 74_[+2]_38 chrX:7256743-7256863 0.00039 4_[+2]_108 chr2R:10274186-10274306 0.00042 63_[+2]_49 chr2R:17476481-17476601 0.00042 107_[+2]_5 chrX:5538118-5538238 0.00046 75_[+2]_37 chr3R:18914316-18914436 0.00046 21_[+2]_91 chr3L:22187524-22187644 0.00046 64_[+2]_48 chr3L:18993807-18993927 0.00049 37_[+2]_75 chr3L:3415926-3416046 0.00053 37_[+2]_75 chr3R:18914074-18914194 0.00055 31_[+2]_81 chr3L:6254869-6254989 0.00071 32_[+2]_80 chr3R:29511596-29511716 0.00071 97_[+2]_15 chr3R:20318233-20318353 0.00071 81_[+2]_31 chr3L:11272275-11272395 0.00092 65_[+2]_47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGGGBA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTAGGGBA width=8 seqs=91 chr3R:11777129-11777249 ( 40) GTAGGGCA 1 chr3R:26228699-26228819 ( 11) GTAGGGCA 1 chr3R:20256323-20256443 ( 58) GTAGGGCA 1 chr2L:6690459-6690579 ( 75) GTAGGGCA 1 chrX:9588037-9588157 ( 83) GTAGGGCA 1 chrX:19578130-19578250 ( 68) GTAGGGTA 1 chr2R:11202219-11202339 ( 58) GTAGGGTA 1 chrX:15453260-15453380 ( 63) GTAGGGTA 1 chr3R:20007564-20007684 ( 27) GTAGGGTA 1 chr3L:4604087-4604207 ( 57) GTAGGGTA 1 chr3R:28004076-28004196 ( 11) GTAGGGTA 1 chr2R:9862264-9862384 ( 62) GTAGGGTA 1 chrX:7961135-7961255 ( 94) GTAGGGTA 1 chr3R:10024480-10024600 ( 84) GTAGGGTA 1 chr2R:7622223-7622343 ( 65) GTAGGGTA 1 chrX:16849183-16849303 ( 97) GTAGGGTA 1 chr2L:527157-527277 ( 63) GTAGGGTA 1 chr3R:13705660-13705780 ( 77) GTAGGGTA 1 chr3L:17531643-17531763 ( 77) GTAGGGGA 1 chr2L:10321628-10321748 ( 78) GTAGGGGA 1 chr3R:12399056-12399176 ( 64) GTAGGGGA 1 chr3L:15196203-15196323 ( 60) GTAGGGGA 1 chr2L:4814408-4814528 ( 83) GTAGGGGA 1 chr3R:18276817-18276937 ( 84) GTAGGGGA 1 chr2L:13804534-13804654 ( 18) GTAGGGGA 1 chr2L:16587827-16587947 ( 45) GCAGGGCA 1 chr3L:6998865-6998985 ( 16) GCAGGGCA 1 chr3R:18068170-18068290 ( 26) GCAGGGCA 1 chr2L:7249777-7249897 ( 54) GCAGGGCA 1 chr2R:7917479-7917599 ( 54) GCAGGGCA 1 chr2R:22115970-22116090 ( 69) GCAGGGCA 1 chr3L:20197214-20197334 ( 59) GCAGGGTA 1 chr2L:1122093-1122213 ( 53) GCAGGGTA 1 chrX:498880-499000 ( 100) GGAGGGCA 1 chr3L:17605003-17605123 ( 64) GTAGGGTG 1 chr2L:6340466-6340586 ( 81) GTAGGGTG 1 chr2L:1723237-1723357 ( 83) GTAGGGTG 1 chr2R:22314171-22314291 ( 100) GTAGGGTG 1 chr2L:10938285-10938405 ( 70) GTAGGGTG 1 chrX:15319869-15319989 ( 73) GTAGGGTG 1 chr3R:10888662-10888782 ( 83) GTAGCGCA 1 chr3R:22086519-22086639 ( 36) GTAGCGCA 1 chr3R:26952325-26952445 ( 71) GTAGGGGG 1 chr3R:14654659-14654779 ( 77) GAAGGGCA 1 chr2R:6548277-6548397 ( 78) GTAGCGCA 1 chrX:18118680-18118800 ( 21) GAAGGGCA 1 chr3R:30860696-30860816 ( 22) GAAGGGCA 1 chr2R:21545742-21545862 ( 95) GGAGGGGA 1 chr2L:2800105-2800225 ( 18) GGAGGGGA 1 chr2R:17393389-17393509 ( 94) GTAGAGCA 1 chr3R:15580809-15580929 ( 89) GTAGAGCA 1 chr3R:12723050-12723170 ( 92) GAAGGGGA 1 chr2L:20884520-20884640 ( 88) GTAGCGGA 1 chr2R:15897311-15897431 ( 27) GAAGGGGA 1 chr3L:19172204-19172324 ( 63) GCAGGGTG 1 chr2R:21194240-21194360 ( 84) GTAGGGAA 1 chr3R:11778980-11779100 ( 19) GTCGGGCA 1 chr2L:12025622-12025742 ( 46) GTCGGGCA 1 chr3L:2762536-2762656 ( 40) GTCGGGCA 1 chr2R:23633144-23633264 ( 11) GCAGGGTG 1 chr2L:6551599-6551719 ( 112) GTAGGGAA 1 chrX:18613602-18613722 ( 102) GCAGGGTG 1 chr3R:20990559-20990679 ( 55) GTCGGGCA 1 chrX:14910146-14910266 ( 99) GCAGGGGG 1 chr2L:13400505-13400625 ( 105) GCAGCGCA 1 chr3L:1580971-1581091 ( 80) GCAGCGCA 1 chr3R:18914597-18914717 ( 57) GTAGAGTA 1 chrX:11680564-11680684 ( 91) GTAGAGGA 1 chrX:13300443-13300563 ( 56) GTAGAGGA 1 chr2L:6343263-6343383 ( 84) GTAGCGCG 1 chr2L:7425804-7425924 ( 62) GTAGCGCG 1 chr2R:11263948-11264068 ( 54) GAAGGGCG 1 chr3R:27069241-27069361 ( 37) GTCGGGGA 1 chrX:19324679-19324799 ( 104) GCAGAGCA 1 chr3L:1517201-1517321 ( 79) GGAGGGTG 1 chr3L:10344983-10345103 ( 69) GGAGGGTG 1 chr3R:16051471-16051591 ( 72) GGAGCGCA 1 chr3L:2118864-2118984 ( 75) GGAGCGCA 1 chrX:7256743-7256863 ( 5) GGAGCGCA 1 chr2R:10274186-10274306 ( 64) GTAGAGCG 1 chr2R:17476481-17476601 ( 108) GAAGGGTG 1 chrX:5538118-5538238 ( 76) GAAGCGCA 1 chr3R:18914316-18914436 ( 22) GCAGAGTA 1 chr3L:22187524-22187644 ( 65) GCAGAGTA 1 chr3L:18993807-18993927 ( 38) GCAGAGGA 1 chr3L:3415926-3416046 ( 38) GGAGAGCA 1 chr3R:18914074-18914194 ( 32) GGAGCGGA 1 chr3L:6254869-6254989 ( 33) GTCGGGGG 1 chr3R:29511596-29511716 ( 98) GAAGGGAA 1 chr3R:20318233-20318353 ( 82) GAAGGGAA 1 chr3L:11272275-11272395 ( 66) GTCGGGAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGGGBA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.83018 E= 5.5e-023 -1315 -1315 222 -1315 -137 -12 -97 102 170 -148 -1315 -1315 -1315 -1315 222 -1315 -123 -59 178 -1315 -1315 -1315 222 -1315 -237 88 3 20 148 -1315 -4 -1315 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGGGBA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 91 E= 5.5e-023 0.000000 0.000000 1.000000 0.000000 0.109890 0.197802 0.109890 0.582418 0.923077 0.076923 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.120879 0.142857 0.736264 0.000000 0.000000 0.000000 1.000000 0.000000 0.054945 0.395604 0.219780 0.329670 0.791209 0.000000 0.208791 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTAGGGBA MEME-2 regular expression -------------------------------------------------------------------------------- GTAGGG[CTG][AG] -------------------------------------------------------------------------------- Time 13.54 secs. ******************************************************************************** ******************************************************************************** MOTIF TATGCCCS MEME-3 width = 8 sites = 12 llr = 124 E-value = 1.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TATGCCCS MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2a:::::: pos.-specific C ::::aaa6 probability G :::a:::4 matrix T 8:a::::: bits 2.2 **** 2.0 **** 1.8 ****** 1.6 ****** Relative 1.3 ******* Entropy 1.1 ******** (14.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TATGCCCC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGCCCS MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:5538118-5538238 97 1.07e-05 CATGTTCGCC TATGCCCC CAGTAGTGTC chr2R:15215554-15215674 104 1.07e-05 GTGCCTTTTA TATGCCCC CCAGGAACT chr2R:7618066-7618186 75 1.07e-05 ACCCTTTTTT TATGCCCC AACCAACCAC chr2L:10938285-10938405 36 1.07e-05 AAAACGGGTG TATGCCCC ACACGACGGG chrX:15786381-15786501 6 1.07e-05 ATCAA TATGCCCC GCTATTACGG chr2L:10321628-10321748 66 2.15e-05 TATACACAGG TATGCCCG ATGAGTAGGG chr3R:23148674-23148794 55 2.15e-05 CATCCACCGA TATGCCCG CCAGTTGGCA chr2R:17477032-17477152 89 2.15e-05 CCCAGTGCGG TATGCCCG ACCATGATAA chr2R:9862264-9862384 33 2.15e-05 TGTACTATCG TATGCCCG ATAATGCTGC chrX:11680564-11680684 71 2.15e-05 TTGGGTCGGC TATGCCCG CCTCTTTGCT chr3L:19172204-19172324 87 3.21e-05 GAAGAGGAAG AATGCCCC ATCCTCCCAT chr2R:11202219-11202339 78 3.21e-05 AATCTTCACG AATGCCCC ACTTAAGTAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGCCCS MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:5538118-5538238 1.1e-05 96_[+3]_16 chr2R:15215554-15215674 1.1e-05 103_[+3]_9 chr2R:7618066-7618186 1.1e-05 74_[+3]_38 chr2L:10938285-10938405 1.1e-05 35_[+3]_77 chrX:15786381-15786501 1.1e-05 5_[+3]_107 chr2L:10321628-10321748 2.1e-05 65_[+3]_47 chr3R:23148674-23148794 2.1e-05 54_[+3]_58 chr2R:17477032-17477152 2.1e-05 88_[+3]_24 chr2R:9862264-9862384 2.1e-05 32_[+3]_80 chrX:11680564-11680684 2.1e-05 70_[+3]_42 chr3L:19172204-19172324 3.2e-05 86_[+3]_26 chr2R:11202219-11202339 3.2e-05 77_[+3]_35 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGCCCS MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TATGCCCS width=8 seqs=12 chrX:5538118-5538238 ( 97) TATGCCCC 1 chr2R:15215554-15215674 ( 104) TATGCCCC 1 chr2R:7618066-7618186 ( 75) TATGCCCC 1 chr2L:10938285-10938405 ( 36) TATGCCCC 1 chrX:15786381-15786501 ( 6) TATGCCCC 1 chr2L:10321628-10321748 ( 66) TATGCCCG 1 chr3R:23148674-23148794 ( 55) TATGCCCG 1 chr2R:17477032-17477152 ( 89) TATGCCCG 1 chr2R:9862264-9862384 ( 33) TATGCCCG 1 chrX:11680564-11680684 ( 71) TATGCCCG 1 chr3L:19172204-19172324 ( 87) AATGCCCC 1 chr2R:11202219-11202339 ( 78) AATGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGCCCS MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8592 E= 1.5e+004 -77 -1023 -1023 154 182 -1023 -1023 -1023 -1023 -1023 -1023 180 -1023 -1023 222 -1023 -1023 222 -1023 -1023 -1023 222 -1023 -1023 -1023 222 -1023 -1023 -1023 144 96 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGCCCS MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.5e+004 0.166667 0.000000 0.000000 0.833333 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.583333 0.416667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TATGCCCS MEME-3 regular expression -------------------------------------------------------------------------------- TATGCCC[CG] -------------------------------------------------------------------------------- Time 19.49 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCGRCCA MEME-4 width = 8 sites = 8 llr = 87 E-value = 1.6e+005 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCGRCCA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::5::a pos.-specific C :aa:1aa: probability G a::a4::: matrix T :::::::: bits 2.2 **** ** 2.0 **** ** 1.8 **** *** 1.6 **** *** Relative 1.3 **** *** Entropy 1.1 **** *** (15.7 bits) 0.9 **** *** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCCGACCA consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGRCCA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:6998865-6998985 42 1.40e-05 CGAATTGAGT GCCGGCCA CAACGAAGCG chr3R:19633005-19633125 54 1.40e-05 GGTCGTTCTA GCCGACCA GGGATGGCTG chr2L:1723237-1723357 67 1.40e-05 GAACTAATGT GCCGGCCA TTGTGTGTGT chr3L:4604087-4604207 33 1.40e-05 TCTAGGCCAT GCCGACCA TAAAGCAAAG chr2L:21304245-21304365 28 1.40e-05 CAGCGGCACA GCCGACCA GACTATGATA chrX:6778857-6778977 36 1.40e-05 GTCAAGTACA GCCGACCA GCGGGCATCC chr3R:27071033-27071153 112 1.40e-05 GTGAGAAGGT GCCGGCCA G chr3L:17605003-17605123 106 2.00e-05 ACCCCCCTTT GCCGCCCA AGGGCGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGRCCA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:6998865-6998985 1.4e-05 41_[+4]_71 chr3R:19633005-19633125 1.4e-05 53_[+4]_59 chr2L:1723237-1723357 1.4e-05 66_[+4]_46 chr3L:4604087-4604207 1.4e-05 32_[+4]_80 chr2L:21304245-21304365 1.4e-05 27_[+4]_85 chrX:6778857-6778977 1.4e-05 35_[+4]_77 chr3R:27071033-27071153 1.4e-05 111_[+4]_1 chr3L:17605003-17605123 2e-05 105_[+4]_7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGRCCA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCGRCCA width=8 seqs=8 chr3L:6998865-6998985 ( 42) GCCGGCCA 1 chr3R:19633005-19633125 ( 54) GCCGACCA 1 chr2L:1723237-1723357 ( 67) GCCGGCCA 1 chr3L:4604087-4604207 ( 33) GCCGACCA 1 chr2L:21304245-21304365 ( 28) GCCGACCA 1 chrX:6778857-6778977 ( 36) GCCGACCA 1 chr3R:27071033-27071153 ( 112) GCCGGCCA 1 chr3L:17605003-17605123 ( 106) GCCGCCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGRCCA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5227 E= 1.6e+005 -965 -965 222 -965 -965 222 -965 -965 -965 222 -965 -965 -965 -965 222 -965 82 -78 80 -965 -965 222 -965 -965 -965 222 -965 -965 182 -965 -965 -965 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGRCCA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 1.6e+005 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.125000 0.375000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCGRCCA MEME-4 regular expression -------------------------------------------------------------------------------- GCCG[AG]CCA -------------------------------------------------------------------------------- Time 25.40 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGACTG MEME-5 width = 8 sites = 2 llr = 23 E-value = 1.6e+006 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGACTG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::::a::: pos.-specific C ::a::a:: probability G aa:a:::a matrix T ::::::a: bits 2.2 **** * * 2.0 **** * * 1.8 ******** 1.6 ******** Relative 1.3 ******** Entropy 1.1 ******** (16.9 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GGCGACTG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGACTG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:18993807-18993927 16 8.05e-06 CTTCTGGGCC GGCGACTG CCATGAATGC chrX:18118680-18118800 11 8.05e-06 TCGAAAAAAC GGCGACTG CGGAAGGGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGACTG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:18993807-18993927 8.1e-06 15_[+5]_97 chrX:18118680-18118800 8.1e-06 10_[+5]_102 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGACTG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGACTG width=8 seqs=2 chr3L:18993807-18993927 ( 16) GGCGACTG 1 chrX:18118680-18118800 ( 11) GGCGACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGACTG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 1.6e+006 -765 -765 221 -765 -765 -765 221 -765 -765 221 -765 -765 -765 -765 221 -765 181 -765 -765 -765 -765 221 -765 -765 -765 -765 -765 180 -765 -765 221 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGACTG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+006 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGACTG MEME-5 regular expression -------------------------------------------------------------------------------- GGCGACTG -------------------------------------------------------------------------------- Time 31.30 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15786381-15786501 2.47e-04 5_[+3(1.07e-05)]_42_[+1(3.57e-05)]_\ 57 chr3L:11337833-11337953 5.34e-03 54_[+3(7.13e-05)]_58 chr3R:13705660-13705780 9.69e-02 76_[+2(2.48e-05)]_36 chr3L:22187524-22187644 2.61e-02 120 chrX:15319869-15319989 1.99e-02 72_[+2(8.88e-05)]_40 chr2L:19074532-19074652 9.99e-01 120 chr3R:20990559-20990679 2.17e-02 120 chrX:13300443-13300563 3.52e-01 120 chr2R:23701885-23702005 2.43e-01 120 chr3R:30860696-30860816 1.13e-01 120 chrX:18613602-18613722 2.02e-01 120 chr3R:29079133-29079253 1.00e-01 18_[+1(3.57e-05)]_94 chr2R:23377473-23377593 2.01e-01 50_[+1(7.33e-05)]_62 chr3L:1580971-1581091 2.84e-02 120 chrX:19321397-19321517 9.63e-01 120 chr3R:26228493-26228613 9.98e-01 120 chrX:4604261-4604381 7.35e-01 120 chr2L:18568355-18568475 1.00e+00 120 chrX:18118680-18118800 4.25e-03 10_[+5(8.05e-06)]_102 chr2L:19506500-19506620 3.93e-01 120 chr3R:27071033-27071153 3.02e-02 111_[+4(1.40e-05)]_1 chrX:6625089-6625209 9.99e-01 120 chrX:10886528-10886648 9.99e-01 120 chr3R:20318233-20318353 1.45e-01 120 chrX:19964030-19964150 2.15e-01 120 chr3L:2536958-2537078 5.07e-02 45_[+1(3.57e-05)]_67 chr2R:7633435-7633555 8.50e-01 120 chr2L:13291206-13291326 3.66e-01 120 chrX:20688180-20688300 1.12e-04 11_[+4(6.34e-05)]_11_[+1(1.42e-05)]_\ 82 chr3L:21177351-21177471 9.21e-02 120 chr2L:6551599-6551719 2.13e-01 120 chr3L:10344983-10345103 6.52e-01 120 chr2L:14533572-14533692 6.40e-01 120 chr2L:527157-527277 2.93e-03 62_[+2(2.48e-05)]_50 chrX:16849183-16849303 2.90e-01 96_[+2(2.48e-05)]_16 chr2R:23377681-23377801 6.19e-01 120 chr2R:23633144-23633264 1.65e-02 48_[+1(7.33e-05)]_64 chrX:6778857-6778977 1.99e-03 35_[+4(1.40e-05)]_14_[+1(1.42e-05)]_\ 55 chr3L:2762536-2762656 3.69e-04 9_[+1(7.33e-05)]_83_[+5(4.84e-05)]_\ 12 chrX:9588037-9588157 1.85e-02 82_[+2(1.06e-05)]_30 chr3R:21888834-21888954 6.96e-01 120 chr2L:13400505-13400625 7.97e-03 35_[+1(7.33e-05)]_77 chr2L:13804534-13804654 7.52e-03 17_[+2(3.55e-05)]_95 chr2L:12025622-12025742 2.09e-03 27_[+1(1.42e-05)]_85 chr3R:18276817-18276937 5.81e-02 83_[+2(3.55e-05)]_29 chr2R:15897311-15897431 8.20e-02 120 chrX:7256743-7256863 3.01e-02 120 chr2R:7622223-7622343 1.83e-03 64_[+2(2.48e-05)]_16_[+4(6.34e-05)]_\ 24 chr3R:18443401-18443521 3.98e-02 120 chr3R:17412557-17412677 1.15e-01 4_[+1(3.57e-05)]_108 chr2L:6690459-6690579 1.19e-02 74_[+2(1.06e-05)]_38 chr2L:10938285-10938405 3.54e-04 35_[+3(1.07e-05)]_12_[+2(8.88e-05)]_\ 6_[+2(8.88e-05)]_43 chrX:11680564-11680684 3.68e-03 70_[+3(2.15e-05)]_42 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chr3R:26952325-26952445 4.77e-02 120 chrX:16090605-16090725 6.07e-02 41_[+1(1.42e-05)]_71 chrX:9338488-9338608 9.42e-03 [+1(7.33e-05)]_112 chr3R:22086519-22086639 2.89e-02 120 chr3L:17049912-17050032 3.18e-01 120 chr3L:19013978-19014098 9.94e-01 120 chr2R:22663529-22663649 5.54e-01 120 chr2R:24877418-24877538 6.01e-02 26_[+1(7.33e-05)]_86 chr2R:16660208-16660328 9.99e-01 120 chr3R:27069241-27069361 2.24e-01 120 chrX:14948832-14948952 8.28e-01 120 chr2L:6343263-6343383 6.32e-01 120 chr2R:23713145-23713265 4.45e-02 34_[+1(1.42e-05)]_78 chrX:17780334-17780454 3.29e-01 120 chrX:17799396-17799516 7.56e-01 120 chr2L:6340466-6340586 6.12e-02 80_[+2(8.88e-05)]_32 chr3R:4977611-4977731 2.90e-01 120 chrX:14910146-14910266 1.64e-01 120 chr3R:22066772-22066892 8.07e-01 120 chr3R:18914074-18914194 2.07e-01 120 chr3L:18993807-18993927 6.78e-06 15_[+5(8.05e-06)]_45_[+1(3.57e-05)]_\ 44 chr2L:1723437-1723557 8.72e-01 120 chr2R:21194240-21194360 4.14e-01 120 chr3R:13952497-13952617 6.96e-01 120 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120 chr3L:17531643-17531763 1.33e-01 76_[+2(3.55e-05)]_36 chr3R:11980026-11980146 9.88e-01 120 chr2L:16587827-16587947 1.09e-02 44_[+2(4.34e-05)]_68 chrX:12906077-12906197 6.46e-02 66_[+1(1.42e-05)]_46 chrX:5538118-5538238 4.81e-04 58_[+1(3.57e-05)]_30_[+3(1.07e-05)]_\ 16 chr3R:20265430-20265550 2.63e-01 120 chrX:18084106-18084226 4.54e-01 120 chr3R:22447449-22447569 3.25e-01 120 chr3L:18791778-18791898 9.98e-01 120 chr3R:7108278-7108398 3.56e-01 120 chr2R:22799692-22799812 2.47e-01 120 chr3L:19172204-19172324 7.04e-03 86_[+3(3.21e-05)]_26 chrX:5894702-5894822 8.73e-01 120 chrX:618861-618981 2.27e-01 120 chr3R:10888662-10888782 2.31e-01 120 chr3R:15581011-15581131 2.20e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************