******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10209.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:16221422-16221542 1.0000 120 chr2R:14848298-14848418 1.0000 120 chrX:5746941-5747061 1.0000 120 chr3R:14457143-14457263 1.0000 120 chr3L:18272919-18273039 1.0000 120 chr3R:5467710-5467830 1.0000 120 chr2R:13450480-13450600 1.0000 120 chr3R:29493453-29493573 1.0000 120 chr2L:484757-484877 1.0000 120 chrX:1276519-1276639 1.0000 120 chr3R:26030841-26030961 1.0000 120 chr3R:17703759-17703879 1.0000 120 chr2R:6144721-6144841 1.0000 120 chr2R:18356310-18356430 1.0000 120 chr3L:614886-615006 1.0000 120 chr2R:15899276-15899396 1.0000 120 chrX:12736263-12736383 1.0000 120 chr3R:20261864-20261984 1.0000 120 chr2R:23396658-23396778 1.0000 120 chr2R:6553133-6553253 1.0000 120 chrX:6862599-6862719 1.0000 120 chr3L:699637-699757 1.0000 120 chr2L:19155224-19155344 1.0000 120 chr2R:9936074-9936194 1.0000 120 chrX:5340107-5340227 1.0000 120 chr2L:246954-247074 1.0000 120 chr2R:22661325-22661445 1.0000 120 chr2R:9071998-9072118 1.0000 120 chrX:7710889-7711009 1.0000 120 chr3L:1442412-1442532 1.0000 120 chr3L:19042143-19042263 1.0000 120 chr3R:16235728-16235848 1.0000 120 chr3R:4979001-4979121 1.0000 120 chr3R:5101853-5101973 1.0000 120 chr2L:2872700-2872820 1.0000 120 chr3R:14362098-14362218 1.0000 120 chrX:11885525-11885645 1.0000 120 chr2R:12021173-12021293 1.0000 120 chr3L:6797417-6797537 1.0000 120 chr3L:9695714-9695834 1.0000 120 chr3L:13917852-13917972 1.0000 120 chrX:7553507-7553627 1.0000 120 chr3R:17056301-17056421 1.0000 120 chrX:10738994-10739114 1.0000 120 chr2R:8122949-8123069 1.0000 120 chr2L:2898413-2898533 1.0000 120 chr3L:3305549-3305669 1.0000 120 chr3L:9466712-9466832 1.0000 120 chr3R:3586351-3586471 1.0000 120 chr2R:15351917-15352037 1.0000 120 chr2R:12913619-12913739 1.0000 120 chr3L:11580075-11580195 1.0000 120 chrX:20506070-20506190 1.0000 120 chr3R:24544472-24544592 1.0000 120 chrX:22837525-22837645 1.0000 120 chr2L:12465850-12465970 1.0000 120 chr3L:12892949-12893069 1.0000 120 chr3L:6797639-6797759 1.0000 120 chr3L:18782256-18782376 1.0000 120 chr3R:6667402-6667522 1.0000 120 chr2R:18339062-18339182 1.0000 120 chrX:10582210-10582330 1.0000 120 chr3L:8080928-8081048 1.0000 120 chr2L:18566744-18566864 1.0000 120 chr2R:14577756-14577876 1.0000 120 chr3L:3543792-3543912 1.0000 120 chr3R:22147623-22147743 1.0000 120 chr2L:21263872-21263992 1.0000 120 chr2L:11189219-11189339 1.0000 120 chr2L:7957098-7957218 1.0000 120 chr2R:11809433-11809553 1.0000 120 chr3L:22471684-22471804 1.0000 120 chr2R:18774943-18775063 1.0000 120 chr3R:17966140-17966260 1.0000 120 chr2L:11199185-11199305 1.0000 120 chrX:17330359-17330479 1.0000 120 chr3L:15592594-15592714 1.0000 120 chr3R:24010904-24011024 1.0000 120 chr3L:18274298-18274418 1.0000 120 chr2L:3435199-3435319 1.0000 120 chr3R:5413161-5413281 1.0000 120 chr3L:15999742-15999862 1.0000 120 chr3L:14956455-14956575 1.0000 120 chr2R:23567376-23567496 1.0000 120 chr3L:643080-643200 1.0000 120 chr3R:21161796-21161916 1.0000 120 chr3R:26556032-26556152 1.0000 120 chrX:19166383-19166503 1.0000 120 chr3R:21594486-21594606 1.0000 120 chr3R:10140401-10140521 1.0000 120 chr3L:4000877-4000997 1.0000 120 chr2R:11602100-11602220 1.0000 120 chrX:15890174-15890294 1.0000 120 chr3L:17009762-17009882 1.0000 120 chr3R:27153571-27153691 1.0000 120 chr2R:12991291-12991411 1.0000 120 chr3R:29891334-29891454 1.0000 120 chrX:8125281-8125401 1.0000 120 chr3L:8683899-8684019 1.0000 120 chr3L:17791645-17791765 1.0000 120 chr2R:23668854-23668974 1.0000 120 chrX:21322795-21322915 1.0000 120 chr3L:14613817-14613937 1.0000 120 chrX:5970303-5970423 1.0000 120 chr3L:22163861-22163981 1.0000 120 chr2R:11427828-11427948 1.0000 120 chr3L:8951188-8951308 1.0000 120 chr2L:9775388-9775508 1.0000 120 chr2L:7339727-7339847 1.0000 120 chr2R:16150908-16151028 1.0000 120 chrX:8777249-8777369 1.0000 120 chrX:16385954-16386074 1.0000 120 chr2L:20822873-20822993 1.0000 120 chrX:13137137-13137257 1.0000 120 chr3R:20259572-20259692 1.0000 120 chr2L:1207641-1207761 1.0000 120 chr3L:18114157-18114277 1.0000 120 chr2L:18305149-18305269 1.0000 120 chr3R:19847960-19848080 1.0000 120 chr2L:7871899-7872019 1.0000 120 chrX:20631255-20631375 1.0000 120 chr2R:23176801-23176921 1.0000 120 chr3R:30802896-30803016 1.0000 120 chr2R:13261843-13261963 1.0000 120 chr3L:13356188-13356308 1.0000 120 chrX:18525051-18525171 1.0000 120 chr3L:3770935-3771055 1.0000 120 chr3R:15139503-15139623 1.0000 120 chr2L:8982760-8982880 1.0000 120 chr2R:18994101-18994221 1.0000 120 chr2L:18377288-18377408 1.0000 120 chrX:947627-947747 1.0000 120 chr3R:9494294-9494414 1.0000 120 chr3L:4254590-4254710 1.0000 120 chr3L:8925797-8925917 1.0000 120 chrX:6614382-6614502 1.0000 120 chr3L:21007861-21007981 1.0000 120 chr2L:20890009-20890129 1.0000 120 chr3R:6373888-6374008 1.0000 120 chr2R:11541239-11541359 1.0000 120 chr3L:4378996-4379116 1.0000 120 chrX:3358010-3358130 1.0000 120 chr3L:3090841-3090961 1.0000 120 chr2L:10552934-10553054 1.0000 120 chr3L:6059232-6059352 1.0000 120 chr2L:16476750-16476870 1.0000 120 chr2L:1629682-1629802 1.0000 120 chr2R:7031164-7031284 1.0000 120 chr3R:8867929-8868049 1.0000 120 chr2R:7748176-7748296 1.0000 120 chrX:14743958-14744078 1.0000 120 chrX:16644919-16645039 1.0000 120 chr2L:901431-901551 1.0000 120 chr2L:6700786-6700906 1.0000 120 chr3R:6818725-6818845 1.0000 120 chr4:226029-226149 1.0000 120 chr3R:6504553-6504673 1.0000 120 chr2L:7395909-7396029 1.0000 120 chr3R:26117746-26117866 1.0000 120 chr2R:22548201-22548321 1.0000 120 chr2R:15034824-15034944 1.0000 120 chrX:16944208-16944328 1.0000 120 chr2R:11435215-11435335 1.0000 120 chr2L:3775978-3776098 1.0000 120 chr3R:5319194-5319314 1.0000 120 chr3R:8744326-8744446 1.0000 120 chr3R:20542397-20542517 1.0000 120 chr2L:10522722-10522842 1.0000 120 chrX:17582812-17582932 1.0000 120 chr3R:5015324-5015444 1.0000 120 chr2L:16275893-16276013 1.0000 120 chr3L:16571559-16571679 1.0000 120 chr3L:3855337-3855457 1.0000 120 chrX:9899926-9900046 1.0000 120 chr3L:20944316-20944436 1.0000 120 chr2R:10103727-10103847 1.0000 120 chr3L:13236761-13236881 1.0000 120 chr2R:18528543-18528663 1.0000 120 chr3L:16060958-16061078 1.0000 120 chr3R:24809714-24809834 1.0000 120 chr2L:3477446-3477566 1.0000 120 chr2L:19867025-19867145 1.0000 120 chr2R:12337700-12337820 1.0000 120 chrX:9664596-9664716 1.0000 120 chr3L:9066239-9066359 1.0000 120 chrX:3188572-3188692 1.0000 120 chr3L:19636867-19636987 1.0000 120 chr3R:15837231-15837351 1.0000 120 chr3L:7861232-7861352 1.0000 120 chr2L:15908641-15908761 1.0000 120 chr3L:14555258-14555378 1.0000 120 chr3R:15089719-15089839 1.0000 120 chr3L:8692315-8692435 1.0000 120 chrX:12242504-12242624 1.0000 120 chr3L:13911754-13911874 1.0000 120 chr2L:522879-522999 1.0000 120 chrX:14765937-14766057 1.0000 120 chr3R:25123354-25123474 1.0000 120 chr3R:23176548-23176668 1.0000 120 chr2R:11275833-11275953 1.0000 120 chr3R:14609362-14609482 1.0000 120 chr2L:14701607-14701727 1.0000 120 chr2L:10442129-10442249 1.0000 120 chr3L:11350781-11350901 1.0000 120 chr2L:18136692-18136812 1.0000 120 chr3L:21509611-21509731 1.0000 120 chr3L:5185265-5185385 1.0000 120 chr3L:8526141-8526261 1.0000 120 chr2L:1628229-1628349 1.0000 120 chrX:9590018-9590138 1.0000 120 chr2L:9224555-9224675 1.0000 120 chr2L:5798108-5798228 1.0000 120 chr3R:16212959-16213079 1.0000 120 chr2R:22690434-22690554 1.0000 120 chr2L:14545502-14545622 1.0000 120 chrX:10488082-10488202 1.0000 120 chr3L:18250853-18250973 1.0000 120 chr2R:17796724-17796844 1.0000 120 chr2L:6874703-6874823 1.0000 120 chrX:7333335-7333455 1.0000 120 chr2L:16547815-16547935 1.0000 120 chr3R:22596607-22596727 1.0000 120 chrX:13391256-13391376 1.0000 120 chr3L:10843344-10843464 1.0000 120 chr2R:24593735-24593855 1.0000 120 chr3R:6468207-6468327 1.0000 120 chr2L:5043918-5044038 1.0000 120 chr2R:13429206-13429326 1.0000 120 chr3R:9600638-9600758 1.0000 120 chr3L:21954710-21954830 1.0000 120 chr3L:18784689-18784809 1.0000 120 chr3R:23333814-23333934 1.0000 120 chr2L:1123520-1123640 1.0000 120 chr3L:20140672-20140792 1.0000 120 chr2R:18326585-18326705 1.0000 120 chr2R:13926266-13926386 1.0000 120 chrX:3414515-3414635 1.0000 120 chr3R:14670987-14671107 1.0000 120 chr3R:26654707-26654827 1.0000 120 chr3R:8819719-8819839 1.0000 120 chr2L:6830450-6830570 1.0000 120 chr3L:7360326-7360446 1.0000 120 chrX:16782266-16782386 1.0000 120 chr3L:8824108-8824228 1.0000 120 chr3L:8395716-8395836 1.0000 120 chr3L:20634579-20634699 1.0000 120 chrX:13368261-13368381 1.0000 120 chr3R:20834999-20835119 1.0000 120 chr2R:14898917-14899037 1.0000 120 chr2L:17470742-17470862 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG10209/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10209.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.312 C 0.183 G 0.184 T 0.321 Background letter frequencies (from file dataset with add-one prior applied): A 0.312 C 0.183 G 0.184 T 0.321 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF YGWCYGWC MEME-1 width = 8 sites = 39 llr = 341 E-value = 9.5e-005 ******************************************************************************** -------------------------------------------------------------------------------- Motif YGWCYGWC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::6:::4: pos.-specific C 5::a4:1a probability G :a::1a:: matrix T 5:4:5:5: bits 2.5 * * * * 2.2 * * * * 2.0 * * * * 1.7 * * * * Relative 1.5 * * * * Entropy 1.2 * * * * (12.6 bits) 1.0 ** * * * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACTGTC consensus C T C A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGWCYGWC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:22837525-22837645 74 3.80e-06 AGATCAGCGA CGACCGTC GGCCAAAACA chr2R:23396658-23396778 76 3.80e-06 CCACTCTTTG CGACCGTC TGGCAGCCTT chr3R:29493453-29493573 63 3.80e-06 AACGACTGAA CGACCGTC GTTTCGCCAC chrX:5746941-5747061 81 3.80e-06 accgaccgaa cgaccgTC GCTATCGCCG chr3L:643080-643200 38 1.42e-05 accgaccgac cgaccgac cgaccgaccg chrX:7710889-7711009 15 1.42e-05 TGGCTAGCAT TGACCGTC GATAAATTTT chrX:5340107-5340227 62 1.42e-05 agcgacaaac cgaccgac agccgagcgG chr2R:18356310-18356430 25 1.42e-05 AGAGACTATA CGACCGAC GGACTGACGC chr3R:16221422-16221542 2 1.42e-05 T CGaccgac gaacccgcca chr3R:4979001-4979121 53 2.48e-05 ttcgactgtt cgactgtc tgtccgtctg chr3L:19042143-19042263 16 2.48e-05 TTCCtcggcc cgtccgtc tgtgcgtccg chr2R:15899276-15899396 68 2.48e-05 tccgtctgtc cgtccgtc catccgttcg chr3R:14670987-14671107 71 6.01e-05 TCAAAATATA CGACTGAC CCAACATTTA chrX:20506070-20506190 50 6.01e-05 ACTTCCCATT TGTCCGtc aatatcaata chr3L:6797417-6797537 77 6.01e-05 ACGAACTGGC CGACTGAC CATTCCACAG chr2R:6144721-6144841 22 6.01e-05 tctgactgtc tgactgtc tgacCGGCGG chr2L:484757-484877 60 6.01e-05 tccgttagtc tgtccgtc ggttagactc chr2R:18339062-18339182 2 6.69e-05 c cgtctgtc tgtctgtctg chr2R:8122949-8123069 98 6.91e-05 TAACATTTAT CGACCGCC AGCAACGCGG chrX:1276519-1276639 90 6.91e-05 CGTTTCCACG CGACCGCC GAAAGAGCGG chrX:13137137-13137257 4 8.72e-05 GAA TGACTGAC GGTCAGACCC chr3L:8080928-8081048 47 8.72e-05 GGgaacggac tgtccgac gaacggacag chr2R:15351917-15352037 66 8.72e-05 accaactggc tgactgac tgactgacAG chr3R:14362098-14362218 99 8.72e-05 acgaactgac tgactgac ggactgagtg chr3R:5101853-5101973 21 8.72e-05 cccgcctgac tgactgac tgactgGAGA chr3L:1442412-1442532 32 8.72e-05 AGCGTCTGGc tgactgac tgactgactg chr3R:26030841-26030961 81 8.72e-05 acggactgac tgactgac tgactgGCGA chr3L:18272919-18273039 29 8.72e-05 agtgactgac tgactgac aaactgacga chrX:10582210-10582330 22 1.06e-04 CGGCCGTGTG TGTCTGTC TGTGTTTGGA chr2L:12465850-12465970 65 1.06e-04 TCGAAGCAGC TGTCTGTC AATATGTCCA chr3R:17056301-17056421 29 1.06e-04 CCTGTCCGTG TGTCTGTC TAAGGTGAGC chr2L:19155224-19155344 98 1.06e-04 TGGATTGAAT TGTCTGTC AATACGGCAA chr3L:614886-615006 42 1.06e-04 TTGGATTGTT TGTCTGTC TGCCTGCTTG chr3R:14457143-14457263 86 1.06e-04 tcgatttgtc tgtctgtc tgtcggtctg chr3R:16235728-16235848 26 1.13e-04 CCGAGGCGAA CGAcggtc ggtcggatgg chr2R:14848298-14848418 85 1.42e-04 TGTGTGCGTT TGACGGTC TCACCAGTTT chr3L:17009762-17009882 79 1.56e-04 GACGTGGGTG TGTCCGCC AGTTAACCGT chr3R:3586351-3586471 34 1.77e-04 tcggtcccac tgtcggtc ccgctgtcag chrX:7553507-7553627 89 1.99e-04 AGAGTCGAAC CGTCGGCC GGATCGTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGWCYGWC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:22837525-22837645 3.8e-06 73_[+1]_39 chr2R:23396658-23396778 3.8e-06 75_[+1]_37 chr3R:29493453-29493573 3.8e-06 62_[+1]_50 chrX:5746941-5747061 3.8e-06 80_[+1]_32 chr3L:643080-643200 1.4e-05 37_[+1]_75 chrX:7710889-7711009 1.4e-05 14_[+1]_98 chrX:5340107-5340227 1.4e-05 61_[+1]_51 chr2R:18356310-18356430 1.4e-05 24_[+1]_88 chr3R:16221422-16221542 1.4e-05 1_[+1]_111 chr3R:4979001-4979121 2.5e-05 52_[+1]_60 chr3L:19042143-19042263 2.5e-05 15_[+1]_97 chr2R:15899276-15899396 2.5e-05 67_[+1]_45 chr3R:14670987-14671107 6e-05 70_[+1]_42 chrX:20506070-20506190 6e-05 49_[+1]_63 chr3L:6797417-6797537 6e-05 76_[+1]_36 chr2R:6144721-6144841 6e-05 21_[+1]_91 chr2L:484757-484877 6e-05 59_[+1]_53 chr2R:18339062-18339182 6.7e-05 1_[+1]_111 chr2R:8122949-8123069 6.9e-05 97_[+1]_15 chrX:1276519-1276639 6.9e-05 89_[+1]_23 chrX:13137137-13137257 8.7e-05 3_[+1]_109 chr3L:8080928-8081048 8.7e-05 46_[+1]_66 chr2R:15351917-15352037 8.7e-05 65_[+1]_47 chr3R:14362098-14362218 8.7e-05 98_[+1]_14 chr3R:5101853-5101973 8.7e-05 20_[+1]_92 chr3L:1442412-1442532 8.7e-05 31_[+1]_81 chr3R:26030841-26030961 8.7e-05 80_[+1]_32 chr3L:18272919-18273039 8.7e-05 28_[+1]_84 chrX:10582210-10582330 0.00011 21_[+1]_91 chr2L:12465850-12465970 0.00011 64_[+1]_48 chr3R:17056301-17056421 0.00011 28_[+1]_84 chr2L:19155224-19155344 0.00011 97_[+1]_15 chr3L:614886-615006 0.00011 41_[+1]_71 chr3R:14457143-14457263 0.00011 85_[+1]_27 chr3R:16235728-16235848 0.00011 25_[+1]_87 chr2R:14848298-14848418 0.00014 84_[+1]_28 chr3L:17009762-17009882 0.00016 78_[+1]_34 chr3R:3586351-3586471 0.00018 33_[+1]_79 chrX:7553507-7553627 0.0002 88_[+1]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGWCYGWC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF YGWCYGWC width=8 seqs=39 chrX:22837525-22837645 ( 74) CGACCGTC 1 chr2R:23396658-23396778 ( 76) CGACCGTC 1 chr3R:29493453-29493573 ( 63) CGACCGTC 1 chrX:5746941-5747061 ( 81) CGACCGTC 1 chr3L:643080-643200 ( 38) CGACCGAC 1 chrX:7710889-7711009 ( 15) TGACCGTC 1 chrX:5340107-5340227 ( 62) CGACCGAC 1 chr2R:18356310-18356430 ( 25) CGACCGAC 1 chr3R:16221422-16221542 ( 2) CGACCGAC 1 chr3R:4979001-4979121 ( 53) CGACTGTC 1 chr3L:19042143-19042263 ( 16) CGTCCGTC 1 chr2R:15899276-15899396 ( 68) CGTCCGTC 1 chr3R:14670987-14671107 ( 71) CGACTGAC 1 chrX:20506070-20506190 ( 50) TGTCCGTC 1 chr3L:6797417-6797537 ( 77) CGACTGAC 1 chr2R:6144721-6144841 ( 22) TGACTGTC 1 chr2L:484757-484877 ( 60) TGTCCGTC 1 chr2R:18339062-18339182 ( 2) CGTCTGTC 1 chr2R:8122949-8123069 ( 98) CGACCGCC 1 chrX:1276519-1276639 ( 90) CGACCGCC 1 chrX:13137137-13137257 ( 4) TGACTGAC 1 chr3L:8080928-8081048 ( 47) TGTCCGAC 1 chr2R:15351917-15352037 ( 66) TGACTGAC 1 chr3R:14362098-14362218 ( 99) TGACTGAC 1 chr3R:5101853-5101973 ( 21) TGACTGAC 1 chr3L:1442412-1442532 ( 32) TGACTGAC 1 chr3R:26030841-26030961 ( 81) TGACTGAC 1 chr3L:18272919-18273039 ( 29) TGACTGAC 1 chrX:10582210-10582330 ( 22) TGTCTGTC 1 chr2L:12465850-12465970 ( 65) TGTCTGTC 1 chr3R:17056301-17056421 ( 29) TGTCTGTC 1 chr2L:19155224-19155344 ( 98) TGTCTGTC 1 chr3L:614886-615006 ( 42) TGTCTGTC 1 chr3R:14457143-14457263 ( 86) TGTCTGTC 1 chr3R:16235728-16235848 ( 26) CGACGGTC 1 chr2R:14848298-14848418 ( 85) TGACGGTC 1 chr3L:17009762-17009882 ( 79) TGTCCGCC 1 chr3R:3586351-3586471 ( 34) TGTCGGTC 1 chrX:7553507-7553627 ( 89) CGTCGGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGWCYGWC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5528 E= 9.5e-005 -1193 133 -1193 74 -1193 -1193 244 -1193 98 -1193 -1193 26 -1193 245 -1193 -1193 -1193 125 -84 52 -1193 -1193 244 -1193 20 -83 -1193 74 -1193 245 -1193 -1193 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGWCYGWC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 39 E= 9.5e-005 0.000000 0.461538 0.000000 0.538462 0.000000 0.000000 1.000000 0.000000 0.615385 0.000000 0.000000 0.384615 0.000000 1.000000 0.000000 0.000000 0.000000 0.435897 0.102564 0.461538 0.000000 0.000000 1.000000 0.000000 0.358974 0.102564 0.000000 0.538462 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif YGWCYGWC MEME-1 regular expression -------------------------------------------------------------------------------- [TC]G[AT]C[TC]G[TA]C -------------------------------------------------------------------------------- Time 7.46 secs. ******************************************************************************** ******************************************************************************** MOTIF SCACTSCC MEME-2 width = 8 sites = 22 llr = 206 E-value = 3.2e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif SCACTSCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::a:2::: pos.-specific C 4a:a157a probability G 6::::43: matrix T ::::71:: bits 2.5 * * * 2.2 * * * 2.0 * * * 1.7 *** * Relative 1.5 **** ** Entropy 1.2 **** ** (13.5 bits) 1.0 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCACTCCC consensus C AGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTSCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6373888-6374008 52 3.78e-06 AAGTAAATAA GCACTCCC TGTTGTTGGT chr2R:12337700-12337820 79 7.58e-06 TTCACAGTCT GCACTGCC ACCTATTTAG chr3R:21161796-21161916 61 7.58e-06 CATTTTGTTG GCACTGCC TTGCGTTGTG chr2L:19155224-19155344 63 7.58e-06 GAATAGATTA GCACTGCC GGGTTATTGA chrX:1276519-1276639 6 7.58e-06 agagG GCACTGCC AACCGGCTGT chr2R:13450480-13450600 41 7.58e-06 CGCACTGGCA GCACTGCC GTACAACGGG chr2L:5043918-5044038 60 1.89e-05 TTCAAAATTT GCACTCGC ACTGTCTGCA chr2L:9224555-9224675 107 1.89e-05 GTTGGTACTG CCACTGCC CTGCTG chr3R:9494294-9494414 5 1.89e-05 GTAG GCACTCGC TGACACAGAG chr2R:6553133-6553253 16 2.64e-05 ACACACATCG GCACACCC CTTTCGCTTC chr2L:7339727-7339847 20 3.39e-05 AAATACTTTG CCACTCGC ATGTTGACAA chr3R:16221422-16221542 42 3.39e-05 accaatccac ccaCTCGC CCACTGACTC chr2R:15899276-15899396 28 3.99e-05 TTTTGCTCTT CCACTGGC GGCGTGTTGA chr2R:16150908-16151028 112 4.35e-05 ACACAAACGC CCACACCC C chr3R:24010904-24011024 12 4.35e-05 CAATCAGGCC CCACACCC AACCCACACC chr3L:8683899-8684019 99 4.57e-05 CGTCTGATTA GCACCGCC AAAGTCATCG chr2L:16476750-16476870 76 5.97e-05 TTACATATTG CCACAGCC AATATTTGCG chrX:16385954-16386074 10 5.97e-05 AAAATATTA GCACTTCC AACGCTACCC chrX:20506070-20506190 38 5.97e-05 CAATATGTTT GCACTTCC CATTTGTCCG chr2R:18356310-18356430 59 5.97e-05 ACTTCACCTT GCACACGC GCGGAAATTG chr2R:23396658-23396778 27 6.56e-05 TCGATAGGAT CCACCCCC TAAGCTATCG chr2L:3435199-3435319 28 9.27e-05 ATAGGTGTCA GCACTTGC TTGAAATGTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTSCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6373888-6374008 3.8e-06 51_[+2]_61 chr2R:12337700-12337820 7.6e-06 78_[+2]_34 chr3R:21161796-21161916 7.6e-06 60_[+2]_52 chr2L:19155224-19155344 7.6e-06 62_[+2]_50 chrX:1276519-1276639 7.6e-06 5_[+2]_107 chr2R:13450480-13450600 7.6e-06 40_[+2]_72 chr2L:5043918-5044038 1.9e-05 59_[+2]_53 chr2L:9224555-9224675 1.9e-05 106_[+2]_6 chr3R:9494294-9494414 1.9e-05 4_[+2]_108 chr2R:6553133-6553253 2.6e-05 15_[+2]_97 chr2L:7339727-7339847 3.4e-05 19_[+2]_93 chr3R:16221422-16221542 3.4e-05 41_[+2]_71 chr2R:15899276-15899396 4e-05 27_[+2]_85 chr2R:16150908-16151028 4.4e-05 111_[+2]_1 chr3R:24010904-24011024 4.4e-05 11_[+2]_101 chr3L:8683899-8684019 4.6e-05 98_[+2]_14 chr2L:16476750-16476870 6e-05 75_[+2]_37 chrX:16385954-16386074 6e-05 9_[+2]_103 chrX:20506070-20506190 6e-05 37_[+2]_75 chr2R:18356310-18356430 6e-05 58_[+2]_54 chr2R:23396658-23396778 6.6e-05 26_[+2]_86 chr2L:3435199-3435319 9.3e-05 27_[+2]_85 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTSCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SCACTSCC width=8 seqs=22 chr3R:6373888-6374008 ( 52) GCACTCCC 1 chr2R:12337700-12337820 ( 79) GCACTGCC 1 chr3R:21161796-21161916 ( 61) GCACTGCC 1 chr2L:19155224-19155344 ( 63) GCACTGCC 1 chrX:1276519-1276639 ( 6) GCACTGCC 1 chr2R:13450480-13450600 ( 41) GCACTGCC 1 chr2L:5043918-5044038 ( 60) GCACTCGC 1 chr2L:9224555-9224675 ( 107) CCACTGCC 1 chr3R:9494294-9494414 ( 5) GCACTCGC 1 chr2R:6553133-6553253 ( 16) GCACACCC 1 chr2L:7339727-7339847 ( 20) CCACTCGC 1 chr3R:16221422-16221542 ( 42) CCACTCGC 1 chr2R:15899276-15899396 ( 28) CCACTGGC 1 chr2R:16150908-16151028 ( 112) CCACACCC 1 chr3R:24010904-24011024 ( 12) CCACACCC 1 chr3L:8683899-8684019 ( 99) GCACCGCC 1 chr2L:16476750-16476870 ( 76) CCACAGCC 1 chrX:16385954-16386074 ( 10) GCACTTCC 1 chrX:20506070-20506190 ( 38) GCACTTCC 1 chr2R:18356310-18356430 ( 59) GCACACGC 1 chr2R:23396658-23396778 ( 27) CCACCCCC 1 chr2L:3435199-3435319 ( 28) GCACTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTSCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 3.2e+001 -1110 99 179 -1110 -1110 245 -1110 -1110 168 -1110 -1110 -1110 -1110 245 -1110 -1110 -46 -101 -1110 109 -1110 131 115 -124 -1110 190 79 -1110 -1110 245 -1110 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTSCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 3.2e+001 0.000000 0.363636 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.227273 0.090909 0.000000 0.681818 0.000000 0.454545 0.409091 0.136364 0.000000 0.681818 0.318182 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SCACTSCC MEME-2 regular expression -------------------------------------------------------------------------------- [GC]CAC[TA][CG][CG]C -------------------------------------------------------------------------------- Time 14.16 secs. ******************************************************************************** ******************************************************************************** MOTIF KGSSGCCR MEME-3 width = 8 sites = 20 llr = 189 E-value = 7.3e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif KGSSGCCR MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::4 pos.-specific C 1:66:9a1 probability G 4a55a2:6 matrix T 5::::::: bits 2.5 * * * 2.2 * * * 2.0 * *** 1.7 * *** Relative 1.5 ****** Entropy 1.2 ****** (13.6 bits) 1.0 ****** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGCCGCCG consensus G GG A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSSGCCR MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:18994101-18994221 25 6.11e-06 ATTTGGTTAT TGCCGCCG ACGTCACACA chr2R:16150908-16151028 26 6.11e-06 CGTAATAGTT TGCCGCCG CAGACATTAG chr3R:17056301-17056421 81 6.11e-06 ACGACGCCTC TGCCGCCG ACATCGTTAC chr3L:699637-699757 2 6.11e-06 G GGGCGCCG CAGTCGACGC chrX:5746941-5747061 15 6.11e-06 TCTTTCGCTC TGCCGCCG AGGTGCATAG chr3L:13236761-13236881 93 1.19e-05 GGCGGTGGCG GGGGGCCG GGAAATATGT chr2L:246954-247074 13 1.19e-05 CGGCTGAGTG GGGGGCCG TGTGCCGGCC chr3L:18784689-18784809 73 2.46e-05 ttttcatacg ggcggcca ccccttttct chr3L:6797417-6797537 11 2.46e-05 GTGGCATTAC TGCCGCCA CTCCGGCAAA chr2R:23396658-23396778 61 2.46e-05 GACGGCTATC GGCGGCCA CTCTTTGCGA chrX:5970303-5970423 21 3.57e-05 TTCGCCACAT TGCGGCCA TTGAGTGTAA chr3R:24544472-24544592 79 3.57e-05 TGTTCTATTT TGGCGCCA AAAATAGCTG chr3L:8080928-8081048 15 3.95e-05 TGAGTTTAGT CGGCGCCG TTGACGTCAA chr3L:3090841-3090961 75 4.47e-05 GTCGCAAGAC TGGGGCCA TAAAAAATAA chr3R:5101853-5101973 47 5.08e-05 GAGCTCTCCC CGGGGCCG AACTTATCCG chr3R:29493453-29493573 10 5.08e-05 ATATCGATA GGCGGGCG ACCGAAGAAG chr3L:614886-615006 95 5.56e-05 CTTTGTGTCC GGCGGCCC TCCCCGTCGC chr3R:29891334-29891454 22 6.15e-05 AGTTTTCAGG TGGCGGCG TTGTAATTTC chr3L:14613817-14613937 67 6.72e-05 GCATACATTT TGGCGCCC AACAGAGAAA chr2R:9071998-9072118 81 8.05e-05 GCAGCATCTA GGCCGGca gacagacaga -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSSGCCR MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:18994101-18994221 6.1e-06 24_[+3]_88 chr2R:16150908-16151028 6.1e-06 25_[+3]_87 chr3R:17056301-17056421 6.1e-06 80_[+3]_32 chr3L:699637-699757 6.1e-06 1_[+3]_111 chrX:5746941-5747061 6.1e-06 14_[+3]_98 chr3L:13236761-13236881 1.2e-05 92_[+3]_20 chr2L:246954-247074 1.2e-05 12_[+3]_100 chr3L:18784689-18784809 2.5e-05 72_[+3]_40 chr3L:6797417-6797537 2.5e-05 10_[+3]_102 chr2R:23396658-23396778 2.5e-05 60_[+3]_52 chrX:5970303-5970423 3.6e-05 20_[+3]_92 chr3R:24544472-24544592 3.6e-05 78_[+3]_34 chr3L:8080928-8081048 4e-05 14_[+3]_98 chr3L:3090841-3090961 4.5e-05 74_[+3]_38 chr3R:5101853-5101973 5.1e-05 46_[+3]_66 chr3R:29493453-29493573 5.1e-05 9_[+3]_103 chr3L:614886-615006 5.6e-05 94_[+3]_18 chr3R:29891334-29891454 6.1e-05 21_[+3]_91 chr3L:14613817-14613937 6.7e-05 66_[+3]_46 chr2R:9071998-9072118 8e-05 80_[+3]_32 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSSGCCR MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KGSSGCCR width=8 seqs=20 chr2R:18994101-18994221 ( 25) TGCCGCCG 1 chr2R:16150908-16151028 ( 26) TGCCGCCG 1 chr3R:17056301-17056421 ( 81) TGCCGCCG 1 chr3L:699637-699757 ( 2) GGGCGCCG 1 chrX:5746941-5747061 ( 15) TGCCGCCG 1 chr3L:13236761-13236881 ( 93) GGGGGCCG 1 chr2L:246954-247074 ( 13) GGGGGCCG 1 chr3L:18784689-18784809 ( 73) GGCGGCCA 1 chr3L:6797417-6797537 ( 11) TGCCGCCA 1 chr2R:23396658-23396778 ( 61) GGCGGCCA 1 chrX:5970303-5970423 ( 21) TGCGGCCA 1 chr3R:24544472-24544592 ( 79) TGGCGCCA 1 chr3L:8080928-8081048 ( 15) CGGCGCCG 1 chr3L:3090841-3090961 ( 75) TGGGGCCA 1 chr3R:5101853-5101973 ( 47) CGGGGCCG 1 chr3R:29493453-29493573 ( 10) GGCGGGCG 1 chr3L:614886-615006 ( 95) GGCGGCCC 1 chr3R:29891334-29891454 ( 22) TGGCGGCG 1 chr3L:14613817-14613937 ( 67) TGGCGCCC 1 chr2R:9071998-9072118 ( 81) GGCCGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSSGCCR MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.9376 E= 7.3e+002 -1097 -87 112 64 -1097 -1097 244 -1097 -1097 159 129 -1097 -1097 159 129 -1097 -1097 -1097 244 -1097 -1097 222 -29 -1097 -1097 245 -1097 -1097 17 -87 158 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSSGCCR MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 7.3e+002 0.000000 0.100000 0.400000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.550000 0.450000 0.000000 0.000000 0.550000 0.450000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.850000 0.150000 0.000000 0.000000 1.000000 0.000000 0.000000 0.350000 0.100000 0.550000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KGSSGCCR MEME-3 regular expression -------------------------------------------------------------------------------- [TG]G[CG][CG]GCC[GA] -------------------------------------------------------------------------------- Time 20.37 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCCCC MEME-4 width = 8 sites = 3 llr = 39 E-value = 5.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :a::aaaa probability G a::a:::: matrix T :::::::: bits 2.5 ** ***** 2.2 ** ***** 2.0 ** ***** 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.8 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCAGCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22596607-22596727 23 2.17e-06 acacacGCGA GCAGCCCC AAGTGGGCGT chrX:3188572-3188692 112 2.17e-06 GATCTCGAGA GCAGCCCC T chrX:19166383-19166503 53 2.17e-06 CTTCTGTTGA GCAGCCCC GATTAAAGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22596607-22596727 2.2e-06 22_[+4]_90 chrX:3188572-3188692 2.2e-06 111_[+4]_1 chrX:19166383-19166503 2.2e-06 52_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCCCC width=8 seqs=3 chr3R:22596607-22596727 ( 23) GCAGCCCC 1 chrX:3188572-3188692 ( 112) GCAGCCCC 1 chrX:19166383-19166503 ( 53) GCAGCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 5.9e+003 -823 -823 244 -823 -823 245 -823 -823 168 -823 -823 -823 -823 -823 244 -823 -823 245 -823 -823 -823 245 -823 -823 -823 245 -823 -823 -823 245 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 5.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCCCC MEME-4 regular expression -------------------------------------------------------------------------------- GCAGCCCC -------------------------------------------------------------------------------- Time 26.50 secs. ******************************************************************************** ******************************************************************************** MOTIF GAGCGGCR MEME-5 width = 8 sites = 6 llr = 71 E-value = 2.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAGCGGCR MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a:::::3 pos.-specific C ::2a::a: probability G a:8:aa:7 matrix T :::::::: bits 2.5 * **** 2.2 * **** 2.0 * **** 1.7 ******* Relative 1.5 ******* Entropy 1.2 ******** (17.0 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGCGGCG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGGCR MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:10738994-10739114 4 2.20e-06 CGC GAGCGGCG AACAAACACA chrX:1276519-1276639 102 2.20e-06 ACCGCCGAAA GAGCGGCG AAAAGCGAAA chr3R:29493453-29493573 41 2.20e-06 CCGAACGGTT GAGCGGCG AAGAAACGAC chr3L:20944316-20944436 72 5.94e-06 GCAAACAAAT GAGCGGCA GCAGGCAGAA chr2R:18994101-18994221 7 5.94e-06 GTGTGC GAGCGGCA ATTTGGTTAT chr2R:6144721-6144841 31 8.13e-06 ctgactgtct gacCGGCG GAGAGACCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGGCR MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:10738994-10739114 2.2e-06 3_[+5]_109 chrX:1276519-1276639 2.2e-06 101_[+5]_11 chr3R:29493453-29493573 2.2e-06 40_[+5]_72 chr3L:20944316-20944436 5.9e-06 71_[+5]_41 chr2R:18994101-18994221 5.9e-06 6_[+5]_106 chr2R:6144721-6144841 8.1e-06 30_[+5]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGGCR MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAGCGGCR width=8 seqs=6 chrX:10738994-10739114 ( 4) GAGCGGCG 1 chrX:1276519-1276639 ( 102) GAGCGGCG 1 chr3R:29493453-29493573 ( 41) GAGCGGCG 1 chr3L:20944316-20944436 ( 72) GAGCGGCA 1 chr2R:18994101-18994221 ( 7) GAGCGGCA 1 chr2R:6144721-6144841 ( 31) GACCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGGCR MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.6482 E= 2.7e+003 -923 -923 244 -923 168 -923 -923 -923 -923 -13 218 -923 -923 245 -923 -923 -923 -923 244 -923 -923 -923 244 -923 -923 245 -923 -923 9 -923 186 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGGCR MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.7e+003 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.333333 0.000000 0.666667 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAGCGGCR MEME-5 regular expression -------------------------------------------------------------------------------- GAGCGGC[GA] -------------------------------------------------------------------------------- Time 32.66 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:16221422-16221542 6.41e-05 1_[+1(1.42e-05)]_32_[+2(3.39e-05)]_\ 71 chr2R:14848298-14848418 7.42e-03 120 chrX:5746941-5747061 1.02e-07 14_[+3(6.11e-06)]_17_[+1(1.42e-05)]_\ 21_[+1(1.42e-05)]_4_[+1(3.80e-06)]_32 chr3R:14457143-14457263 1.12e-01 120 chr3L:18272919-18273039 3.58e-02 20_[+1(8.72e-05)]_[+1(8.72e-05)]_84 chr3R:5467710-5467830 1.86e-01 120 chr2R:13450480-13450600 7.50e-04 31_[+2(2.28e-05)]_1_[+2(7.58e-06)]_\ 72 chr3R:29493453-29493573 5.12e-07 9_[+3(5.08e-05)]_23_[+5(2.20e-06)]_\ 14_[+1(3.80e-06)]_50 chr2L:484757-484877 9.94e-03 59_[+1(6.01e-05)]_53 chrX:1276519-1276639 2.59e-07 5_[+2(7.58e-06)]_76_[+1(6.91e-05)]_\ 4_[+5(2.20e-06)]_11 chr3R:26030841-26030961 3.02e-03 76_[+1(8.72e-05)]_[+1(8.72e-05)]_28 chr3R:17703759-17703879 9.06e-04 120 chr2R:6144721-6144841 7.38e-05 13_[+1(6.01e-05)]_[+1(6.01e-05)]_1_\ [+5(8.13e-06)]_82 chr2R:18356310-18356430 8.33e-05 24_[+1(1.42e-05)]_26_[+2(5.97e-05)]_\ 54 chr3L:614886-615006 4.46e-06 94_[+3(5.56e-05)]_18 chr2R:15899276-15899396 3.14e-05 27_[+2(3.99e-05)]_20_[+1(2.48e-05)]_\ 4_[+1(2.48e-05)]_45 chrX:12736263-12736383 5.81e-01 120 chr3R:20261864-20261984 8.23e-01 120 chr2R:23396658-23396778 3.46e-07 26_[+2(6.56e-05)]_26_[+3(2.46e-05)]_\ 7_[+1(3.80e-06)]_37 chr2R:6553133-6553253 6.27e-04 15_[+2(2.64e-05)]_97 chrX:6862599-6862719 5.65e-01 120 chr3L:699637-699757 8.86e-04 1_[+3(6.11e-06)]_111 chr2L:19155224-19155344 7.77e-05 28_[+4(7.46e-05)]_26_[+2(7.58e-06)]_\ 50 chr2R:9936074-9936194 3.31e-01 120 chrX:5340107-5340227 1.23e-04 61_[+1(1.42e-05)]_4_[+5(7.93e-05)]_\ 39 chr2L:246954-247074 7.43e-03 12_[+3(1.19e-05)]_100 chr2R:22661325-22661445 9.68e-01 120 chr2R:9071998-9072118 4.91e-03 80_[+3(8.05e-05)]_32 chrX:7710889-7711009 6.47e-04 14_[+1(1.42e-05)]_98 chr3L:1442412-1442532 8.66e-02 31_[+1(8.72e-05)]_[+1(8.72e-05)]_\ [+1(8.72e-05)]_65 chr3L:19042143-19042263 1.17e-03 15_[+1(2.48e-05)]_36_[+1(6.01e-05)]_\ 53 chr3R:16235728-16235848 1.17e-02 120 chr3R:4979001-4979121 4.69e-02 24_[+1(6.01e-05)]_20_[+1(2.48e-05)]_\ [+1(6.01e-05)]_52 chr3R:5101853-5101973 7.08e-06 16_[+1(8.72e-05)]_[+1(8.72e-05)]_14_\ [+3(5.08e-05)]_48_[+2(6.56e-05)]_10 chr2L:2872700-2872820 9.25e-01 120 chr3R:14362098-14362218 2.37e-03 46_[+3(9.09e-05)]_40_[+1(8.72e-05)]_\ 18 chrX:11885525-11885645 9.66e-01 120 chr2R:12021173-12021293 1.75e-03 120 chr3L:6797417-6797537 1.54e-05 10_[+3(2.46e-05)]_58_[+1(6.01e-05)]_\ 36 chr3L:9695714-9695834 7.45e-01 120 chr3L:13917852-13917972 1.51e-01 120 chrX:7553507-7553627 3.80e-03 120 chr3R:17056301-17056421 3.82e-05 57_[+3(3.57e-05)]_15_[+3(6.11e-06)]_\ 32 chrX:10738994-10739114 2.35e-03 3_[+5(2.20e-06)]_109 chr2R:8122949-8123069 1.09e-03 97_[+1(6.91e-05)]_15 chr2L:2898413-2898533 8.10e-02 120 chr3L:3305549-3305669 7.73e-01 120 chr3L:9466712-9466832 9.75e-01 120 chr3R:3586351-3586471 1.65e-02 120 chr2R:15351917-15352037 4.02e-02 41_[+1(8.72e-05)]_16_[+1(8.72e-05)]_\ [+1(8.72e-05)]_39 chr2R:12913619-12913739 4.72e-01 120 chr3L:11580075-11580195 9.48e-01 120 chrX:20506070-20506190 2.52e-03 37_[+2(5.97e-05)]_4_[+1(6.01e-05)]_\ 63 chr3R:24544472-24544592 4.85e-02 78_[+3(3.57e-05)]_34 chrX:22837525-22837645 1.36e-03 73_[+1(3.80e-06)]_39 chr2L:12465850-12465970 3.57e-01 120 chr3L:12892949-12893069 9.69e-01 120 chr3L:6797639-6797759 1.00e+00 120 chr3L:18782256-18782376 6.17e-01 120 chr3R:6667402-6667522 9.93e-01 120 chr2R:18339062-18339182 3.03e-02 1_[+1(6.69e-05)]_111 chrX:10582210-10582330 6.95e-02 120 chr3L:8080928-8081048 9.95e-04 14_[+3(3.95e-05)]_24_[+1(8.72e-05)]_\ 66 chr2L:18566744-18566864 5.47e-01 120 chr2R:14577756-14577876 2.75e-01 120 chr3L:3543792-3543912 8.54e-01 120 chr3R:22147623-22147743 9.68e-01 120 chr2L:21263872-21263992 6.87e-01 120 chr2L:11189219-11189339 9.99e-01 120 chr2L:7957098-7957218 8.70e-01 120 chr2R:11809433-11809553 8.33e-01 120 chr3L:22471684-22471804 7.16e-01 120 chr2R:18774943-18775063 8.61e-01 120 chr3R:17966140-17966260 3.82e-01 120 chr2L:11199185-11199305 8.47e-01 120 chrX:17330359-17330479 9.96e-01 120 chr3L:15592594-15592714 2.74e-01 120 chr3R:24010904-24011024 7.18e-02 11_[+2(4.35e-05)]_101 chr3L:18274298-18274418 1.00e+00 120 chr2L:3435199-3435319 3.75e-01 27_[+2(9.27e-05)]_85 chr3R:5413161-5413281 7.05e-01 120 chr3L:15999742-15999862 9.88e-01 120 chr3L:14956455-14956575 3.56e-01 120 chr2R:23567376-23567496 2.67e-01 120 chr3L:643080-643200 2.64e-03 25_[+1(1.42e-05)]_[+1(1.42e-05)]_\ [+1(1.42e-05)]_[+1(1.42e-05)]_63 chr3R:21161796-21161916 2.87e-02 60_[+2(7.58e-06)]_52 chr3R:26556032-26556152 6.46e-01 120 chrX:19166383-19166503 6.40e-04 52_[+4(2.17e-06)]_60 chr3R:21594486-21594606 9.06e-01 120 chr3R:10140401-10140521 1.13e-01 120 chr3L:4000877-4000997 4.67e-01 120 chr2R:11602100-11602220 9.97e-01 120 chrX:15890174-15890294 6.46e-01 120 chr3L:17009762-17009882 1.52e-02 120 chr3R:27153571-27153691 9.47e-01 120 chr2R:12991291-12991411 8.87e-01 120 chr3R:29891334-29891454 4.70e-02 21_[+3(6.15e-05)]_91 chrX:8125281-8125401 5.28e-01 120 chr3L:8683899-8684019 8.46e-03 98_[+2(4.57e-05)]_14 chr3L:17791645-17791765 9.97e-01 120 chr2R:23668854-23668974 5.74e-02 120 chrX:21322795-21322915 9.99e-01 120 chr3L:14613817-14613937 1.39e-01 66_[+3(6.72e-05)]_46 chrX:5970303-5970423 4.18e-03 20_[+3(3.57e-05)]_92 chr3L:22163861-22163981 2.34e-01 120 chr2R:11427828-11427948 6.94e-02 2_[+4(7.46e-05)]_110 chr3L:8951188-8951308 1.00e+00 120 chr2L:9775388-9775508 6.01e-02 120 chr2L:7339727-7339847 2.21e-03 19_[+2(3.39e-05)]_93 chr2R:16150908-16151028 6.30e-05 25_[+3(6.11e-06)]_78_[+2(4.35e-05)]_\ 1 chrX:8777249-8777369 9.19e-01 120 chrX:16385954-16386074 6.10e-02 9_[+2(5.97e-05)]_103 chr2L:20822873-20822993 1.80e-01 120 chrX:13137137-13137257 5.49e-03 3_[+1(8.72e-05)]_109 chr3R:20259572-20259692 7.41e-01 120 chr2L:1207641-1207761 4.51e-01 120 chr3L:18114157-18114277 1.00e+00 120 chr2L:18305149-18305269 1.00e+00 120 chr3R:19847960-19848080 4.80e-01 120 chr2L:7871899-7872019 9.98e-01 120 chrX:20631255-20631375 2.22e-01 120 chr2R:23176801-23176921 7.29e-01 120 chr3R:30802896-30803016 7.41e-01 120 chr2R:13261843-13261963 9.90e-01 120 chr3L:13356188-13356308 7.44e-01 120 chrX:18525051-18525171 9.96e-01 120 chr3L:3770935-3771055 2.23e-01 120 chr3R:15139503-15139623 7.38e-01 120 chr2L:8982760-8982880 9.95e-01 120 chr2R:18994101-18994221 1.08e-04 6_[+5(5.94e-06)]_10_[+3(6.11e-06)]_\ 88 chr2L:18377288-18377408 1.00e+00 120 chrX:947627-947747 1.00e+00 120 chr3R:9494294-9494414 9.44e-02 4_[+2(1.89e-05)]_108 chr3L:4254590-4254710 9.98e-01 120 chr3L:8925797-8925917 9.42e-01 120 chrX:6614382-6614502 9.81e-01 120 chr3L:21007861-21007981 6.31e-01 120 chr2L:20890009-20890129 9.08e-01 120 chr3R:6373888-6374008 2.38e-02 51_[+2(3.78e-06)]_61 chr2R:11541239-11541359 2.27e-01 120 chr3L:4378996-4379116 7.61e-01 120 chrX:3358010-3358130 8.48e-01 120 chr3L:3090841-3090961 8.48e-02 74_[+3(4.47e-05)]_38 chr2L:10552934-10553054 6.76e-01 120 chr3L:6059232-6059352 2.99e-01 120 chr2L:16476750-16476870 1.52e-01 75_[+2(5.97e-05)]_37 chr2L:1629682-1629802 9.12e-01 120 chr2R:7031164-7031284 5.65e-01 120 chr3R:8867929-8868049 9.64e-01 120 chr2R:7748176-7748296 8.47e-01 120 chrX:14743958-14744078 9.86e-01 120 chrX:16644919-16645039 3.90e-01 120 chr2L:901431-901551 1.77e-02 120 chr2L:6700786-6700906 2.51e-02 120 chr3R:6818725-6818845 1.00e+00 120 chr4:226029-226149 6.35e-01 120 chr3R:6504553-6504673 2.57e-02 120 chr2L:7395909-7396029 1.00e+00 120 chr3R:26117746-26117866 9.38e-01 120 chr2R:22548201-22548321 4.33e-01 120 chr2R:15034824-15034944 5.08e-01 120 chrX:16944208-16944328 9.70e-01 120 chr2R:11435215-11435335 9.77e-01 120 chr2L:3775978-3776098 2.60e-01 120 chr3R:5319194-5319314 8.64e-01 120 chr3R:8744326-8744446 9.25e-01 120 chr3R:20542397-20542517 1.00e+00 120 chr2L:10522722-10522842 6.24e-01 120 chrX:17582812-17582932 8.32e-01 120 chr3R:5015324-5015444 1.80e-01 120 chr2L:16275893-16276013 2.05e-01 120 chr3L:16571559-16571679 4.82e-01 120 chr3L:3855337-3855457 9.94e-01 120 chrX:9899926-9900046 1.00e+00 120 chr3L:20944316-20944436 1.79e-03 71_[+5(5.94e-06)]_41 chr2R:10103727-10103847 5.81e-01 120 chr3L:13236761-13236881 8.78e-03 78_[+3(7.17e-05)]_6_[+3(1.19e-05)]_\ 20 chr2R:18528543-18528663 7.60e-01 120 chr3L:16060958-16061078 1.00e+00 120 chr3R:24809714-24809834 8.33e-02 120 chr2L:3477446-3477566 9.81e-01 120 chr2L:19867025-19867145 1.98e-01 120 chr2R:12337700-12337820 2.74e-04 78_[+2(7.58e-06)]_21_[+4(7.46e-05)]_\ 5 chrX:9664596-9664716 9.83e-01 120 chr3L:9066239-9066359 9.92e-01 120 chrX:3188572-3188692 1.83e-03 111_[+4(2.17e-06)]_1 chr3L:19636867-19636987 1.00e+00 120 chr3R:15837231-15837351 9.69e-01 120 chr3L:7861232-7861352 1.00e+00 120 chr2L:15908641-15908761 1.00e+00 120 chr3L:14555258-14555378 6.68e-02 120 chr3R:15089719-15089839 7.65e-01 120 chr3L:8692315-8692435 1.00e+00 120 chrX:12242504-12242624 4.18e-01 120 chr3L:13911754-13911874 9.03e-01 120 chr2L:522879-522999 9.97e-01 120 chrX:14765937-14766057 1.00e+00 120 chr3R:25123354-25123474 2.88e-02 120 chr3R:23176548-23176668 6.17e-01 120 chr2R:11275833-11275953 9.80e-01 120 chr3R:14609362-14609482 1.00e+00 120 chr2L:14701607-14701727 2.10e-01 120 chr2L:10442129-10442249 9.44e-01 120 chr3L:11350781-11350901 9.30e-01 120 chr2L:18136692-18136812 4.51e-03 18_[+5(7.93e-05)]_94 chr3L:21509611-21509731 8.05e-01 120 chr3L:5185265-5185385 3.69e-02 120 chr3L:8526141-8526261 9.26e-01 120 chr2L:1628229-1628349 9.67e-01 120 chrX:9590018-9590138 9.96e-01 120 chr2L:9224555-9224675 2.70e-02 85_[+2(8.02e-05)]_13_[+2(1.89e-05)]_\ 6 chr2L:5798108-5798228 9.93e-01 120 chr3R:16212959-16213079 3.66e-02 120 chr2R:22690434-22690554 1.00e+00 120 chr2L:14545502-14545622 5.13e-01 120 chrX:10488082-10488202 8.74e-01 120 chr3L:18250853-18250973 9.87e-01 120 chr2R:17796724-17796844 9.99e-01 120 chr2L:6874703-6874823 1.00e+00 120 chrX:7333335-7333455 7.30e-01 120 chr2L:16547815-16547935 8.89e-01 120 chr3R:22596607-22596727 6.28e-05 22_[+4(2.17e-06)]_90 chrX:13391256-13391376 1.89e-01 120 chr3L:10843344-10843464 3.78e-01 120 chr2R:24593735-24593855 3.22e-01 120 chr3R:6468207-6468327 6.84e-01 120 chr2L:5043918-5044038 5.77e-02 59_[+2(1.89e-05)]_53 chr2R:13429206-13429326 8.30e-01 120 chr3R:9600638-9600758 1.00e+00 120 chr3L:21954710-21954830 2.39e-01 120 chr3L:18784689-18784809 8.32e-04 72_[+3(2.46e-05)]_40 chr3R:23333814-23333934 9.55e-01 120 chr2L:1123520-1123640 4.64e-01 120 chr3L:20140672-20140792 6.68e-01 120 chr2R:18326585-18326705 5.27e-01 120 chr2R:13926266-13926386 9.97e-01 120 chrX:3414515-3414635 9.74e-01 120 chr3R:14670987-14671107 9.62e-02 70_[+1(6.01e-05)]_42 chr3R:26654707-26654827 9.24e-01 120 chr3R:8819719-8819839 2.98e-01 120 chr2L:6830450-6830570 1.00e+00 120 chr3L:7360326-7360446 8.03e-01 120 chrX:16782266-16782386 3.25e-01 120 chr3L:8824108-8824228 3.62e-01 120 chr3L:8395716-8395836 9.99e-01 120 chr3L:20634579-20634699 6.15e-01 120 chrX:13368261-13368381 4.72e-01 120 chr3R:20834999-20835119 8.66e-01 120 chr2R:14898917-14899037 1.77e-01 120 chr2L:17470742-17470862 9.96e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n07.farnam.hpc.yale.internal ********************************************************************************