******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10147.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:17412637-17412757 1.0000 120 chr3R:16558930-16559050 1.0000 120 chr3R:23110848-23110968 1.0000 120 chrX:15996923-15997043 1.0000 120 chr3L:2411058-2411178 1.0000 120 chr2R:9544161-9544281 1.0000 120 chr2R:22882691-22882811 1.0000 120 chr2R:12218889-12219009 1.0000 120 chr2L:17558189-17558309 1.0000 120 chr3L:19216576-19216696 1.0000 120 chr2R:18374547-18374667 1.0000 120 chr2R:15537980-15538100 1.0000 120 chr2R:16660230-16660350 1.0000 120 chr2L:18965740-18965860 1.0000 120 chr3L:1609726-1609846 1.0000 120 chr3L:19969289-19969409 1.0000 120 chr2R:326550-326670 1.0000 120 chr3L:19598770-19598890 1.0000 120 chr3L:4445955-4446075 1.0000 120 chrX:18004378-18004498 1.0000 120 chr2L:7443013-7443133 1.0000 120 chr2L:18658195-18658315 1.0000 120 chrX:9004500-9004620 1.0000 120 chrX:3288945-3289065 1.0000 120 chrX:15120193-15120313 1.0000 120 chr2R:9756281-9756401 1.0000 120 chr2R:14698970-14699090 1.0000 120 chr3R:14542173-14542293 1.0000 120 chr3L:3411861-3411981 1.0000 120 chr2R:15155033-15155153 1.0000 120 chr3L:10599676-10599796 1.0000 120 chr3R:25152426-25152546 1.0000 120 chr3R:14912703-14912823 1.0000 120 chrX:6179570-6179690 1.0000 120 chrX:12547161-12547281 1.0000 120 chr3L:14847492-14847612 1.0000 120 chr2L:20951443-20951563 1.0000 120 chrX:17694961-17695081 1.0000 120 chr2L:7675516-7675636 1.0000 120 chr3L:3381997-3382117 1.0000 120 chr3R:12562109-12562229 1.0000 120 chr3R:17526180-17526300 1.0000 120 chr2R:23154686-23154806 1.0000 120 chr3L:917353-917473 1.0000 120 chr2L:6921813-6921933 1.0000 120 chrX:11156338-11156458 1.0000 120 chr3L:21859787-21859907 1.0000 120 chr3L:8028815-8028935 1.0000 120 chr2R:16142110-16142230 1.0000 120 chr3L:16657009-16657129 1.0000 120 chr3R:21420083-21420203 1.0000 120 chr2L:14887612-14887732 1.0000 120 chr2L:18153208-18153328 1.0000 120 chr3L:13903392-13903512 1.0000 120 chr2L:13461007-13461127 1.0000 120 chr2L:18119829-18119949 1.0000 120 chr2R:15480276-15480396 1.0000 120 chr2L:2348661-2348781 1.0000 120 chrX:14169216-14169336 1.0000 120 chrX:12937984-12938104 1.0000 120 chr3R:15347931-15348051 1.0000 120 chr2L:7091053-7091173 1.0000 120 chr3L:11322575-11322695 1.0000 120 chr2L:1048412-1048532 1.0000 120 chr3R:24467422-24467542 1.0000 120 chr2R:21991104-21991224 1.0000 120 chr3R:14875671-14875791 1.0000 120 chrX:6067559-6067679 1.0000 120 chr2L:7223133-7223253 1.0000 120 chr3L:10362784-10362904 1.0000 120 chr2R:9820143-9820263 1.0000 120 chr3R:31127550-31127670 1.0000 120 chr3R:20908764-20908884 1.0000 120 chrX:17330434-17330554 1.0000 120 chr2L:8746369-8746489 1.0000 120 chrX:10784890-10785010 1.0000 120 chr3L:8509804-8509924 1.0000 120 chr3L:15034513-15034633 1.0000 120 chr3R:29626050-29626170 1.0000 120 chr2L:11902616-11902736 1.0000 120 chr2R:9291705-9291825 1.0000 120 chr3L:11351475-11351595 1.0000 120 chr3R:18438884-18439004 1.0000 120 chr3R:29978697-29978817 1.0000 120 chr3R:30046791-30046911 1.0000 120 chr2R:24139222-24139342 1.0000 120 chr3L:16147943-16148063 1.0000 120 chr3L:16870800-16870920 1.0000 120 chr2L:273738-273858 1.0000 120 chr3L:13993892-13994012 1.0000 120 chr3L:5182382-5182502 1.0000 120 chr2R:16581719-16581839 1.0000 120 chrX:9119419-9119539 1.0000 120 chr3R:16151605-16151725 1.0000 120 chr3L:11580072-11580192 1.0000 120 chr3L:19338409-19338529 1.0000 120 chr2L:6794985-6795105 1.0000 120 chr3R:26333473-26333593 1.0000 120 chr2L:2735087-2735207 1.0000 120 chr3R:23612213-23612333 1.0000 120 chrX:4762404-4762524 1.0000 120 chr3R:26945375-26945495 1.0000 120 chr3R:16476556-16476676 1.0000 120 chr3R:25855676-25855796 1.0000 120 chr3R:11243138-11243258 1.0000 120 chr2R:21091806-21091926 1.0000 120 chr2R:11602024-11602144 1.0000 120 chr3L:17113354-17113474 1.0000 120 chr3L:2913431-2913551 1.0000 120 chr2L:14394860-14394980 1.0000 120 chr2L:8894380-8894500 1.0000 120 chr3R:28677736-28677856 1.0000 120 chr3L:9838708-9838828 1.0000 120 chr2R:7054326-7054446 1.0000 120 chr2R:9388675-9388795 1.0000 120 chr2L:892597-892717 1.0000 120 chr3R:28118199-28118319 1.0000 120 chr2L:7871950-7872070 1.0000 120 chr3R:7892830-7892950 1.0000 120 chr3R:25056257-25056377 1.0000 120 chrX:10628982-10629102 1.0000 120 chr2R:10395508-10395628 1.0000 120 chr2R:7879116-7879236 1.0000 120 chr3L:12805942-12806062 1.0000 120 chr2R:22608377-22608497 1.0000 120 chr2L:12542149-12542269 1.0000 120 chr2R:14170437-14170557 1.0000 120 chrX:12547790-12547910 1.0000 120 chr3L:12275806-12275926 1.0000 120 chr2R:18273463-18273583 1.0000 120 chr3L:17310646-17310766 1.0000 120 chr3R:21852722-21852842 1.0000 120 chr3L:20519243-20519363 1.0000 120 chr2L:19019182-19019302 1.0000 120 chrX:2790188-2790308 1.0000 120 chr3L:21042640-21042760 1.0000 120 chr3L:40218-40338 1.0000 120 chr2R:14305188-14305308 1.0000 120 chrX:16580045-16580165 1.0000 120 chr2L:3938964-3939084 1.0000 120 chr4:558764-558884 1.0000 120 chr3L:14559810-14559930 1.0000 120 chr3R:10688972-10689092 1.0000 120 chrX:17726622-17726742 1.0000 120 chr2L:937005-937125 1.0000 120 chr3R:9237832-9237952 1.0000 120 chrX:17465635-17465755 1.0000 120 chr3L:15275606-15275726 1.0000 120 chrX:3841052-3841172 1.0000 120 chr3L:11450678-11450798 1.0000 120 chr3R:27289740-27289860 1.0000 120 chr3R:25275441-25275561 1.0000 120 chrX:12699255-12699375 1.0000 120 chr3L:3770950-3771070 1.0000 120 chr3R:16249694-16249814 1.0000 120 chrX:8542103-8542223 1.0000 120 chr2R:12437145-12437265 1.0000 120 chr2R:18350013-18350133 1.0000 120 chr2L:1837841-1837961 1.0000 120 chr2L:19285599-19285719 1.0000 120 chrX:10899360-10899480 1.0000 120 chr2R:11178575-11178695 1.0000 120 chr3R:26494349-26494469 1.0000 120 chr3L:16149969-16150089 1.0000 120 chr3R:10139849-10139969 1.0000 120 chr3L:6609331-6609451 1.0000 120 chrX:13676611-13676731 1.0000 120 chrX:3399432-3399552 1.0000 120 chr2R:10160449-10160569 1.0000 120 chr2R:23578589-23578709 1.0000 120 chr3R:28959243-28959363 1.0000 120 chr3L:16602857-16602977 1.0000 120 chr3R:9039517-9039637 1.0000 120 chr3L:12409114-12409234 1.0000 120 chr3L:11285276-11285396 1.0000 120 chr3L:16582852-16582972 1.0000 120 chr3L:19260573-19260693 1.0000 120 chr2R:12035099-12035219 1.0000 120 chrX:7691541-7691661 1.0000 120 chr2R:22546773-22546893 1.0000 120 chr3R:25184118-25184238 1.0000 120 chr2R:12547643-12547763 1.0000 120 chr2R:6668977-6669097 1.0000 120 chr2L:13905465-13905585 1.0000 120 chr2R:17161026-17161146 1.0000 120 chr3L:17003678-17003798 1.0000 120 chr3L:3035230-3035350 1.0000 120 chrX:11379286-11379406 1.0000 120 chr2R:17085655-17085775 1.0000 120 chr3R:20833002-20833122 1.0000 120 chr2R:23697902-23698022 1.0000 120 chr3L:12269984-12270104 1.0000 120 chr3R:26105942-26106062 1.0000 120 chr3L:17529818-17529938 1.0000 120 chr3L:8093774-8093894 1.0000 120 chr3L:549048-549168 1.0000 120 chr2R:6749318-6749438 1.0000 120 chr2L:10366644-10366764 1.0000 120 chrX:16930466-16930586 1.0000 120 chr2R:9186280-9186400 1.0000 120 chrX:8145658-8145778 1.0000 120 chr3R:23067569-23067689 1.0000 120 chr3L:4353696-4353816 1.0000 120 chrX:17696760-17696880 1.0000 120 chr3L:2845386-2845506 1.0000 120 chr3L:14335960-14336080 1.0000 120 chr3R:30325593-30325713 1.0000 120 chr2L:19140960-19141080 1.0000 120 chr2L:19121073-19121193 1.0000 120 chr3R:26117900-26118020 1.0000 120 chr2R:22062596-22062716 1.0000 120 chr2L:2374001-2374121 1.0000 120 chr3R:16213052-16213172 1.0000 120 chr2L:16647834-16647954 1.0000 120 chrX:10786107-10786227 1.0000 120 chrX:9135202-9135322 1.0000 120 chr2R:19455987-19456107 1.0000 120 chrX:15043966-15044086 1.0000 120 chr3L:9371093-9371213 1.0000 120 chr3L:16054241-16054361 1.0000 120 chr3R:22121329-22121449 1.0000 120 chrX:3019784-3019904 1.0000 120 chrX:18900027-18900147 1.0000 120 chr3R:7821683-7821803 1.0000 120 chr2R:8122978-8123098 1.0000 120 chr3R:8030633-8030753 1.0000 120 chr3L:15144319-15144439 1.0000 120 chr3L:17596992-17597112 1.0000 120 chr2R:22657290-22657410 1.0000 120 chr3L:797065-797185 1.0000 120 chr3L:8024866-8024986 1.0000 120 chrX:6375753-6375873 1.0000 120 chr2L:6967795-6967915 1.0000 120 chr2R:13586418-13586538 1.0000 120 chr3L:13044447-13044567 1.0000 120 chr2L:10698139-10698259 1.0000 120 chrX:21375778-21375898 1.0000 120 chr2R:10023907-10024027 1.0000 120 chr2L:7601967-7602087 1.0000 120 chr3R:28556497-28556617 1.0000 120 chr2R:13261813-13261933 1.0000 120 chr2L:17588755-17588875 1.0000 120 chr2L:1362380-1362500 1.0000 120 chr3L:15988278-15988398 1.0000 120 chrX:6657073-6657193 1.0000 120 chr3R:11661892-11662012 1.0000 120 chr3R:22781619-22781739 1.0000 120 chr3R:5413106-5413226 1.0000 120 chr2R:18883619-18883739 1.0000 120 chr3L:5554482-5554602 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_CG10147/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/CG10147.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.352 C 0.156 G 0.152 T 0.34 Background letter frequencies (from file dataset with add-one prior applied): A 0.352 C 0.156 G 0.152 T 0.34 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF WDGCNGCS MEME-1 width = 8 sites = 29 llr = 266 E-value = 1.2e-003 ******************************************************************************** -------------------------------------------------------------------------------- Motif WDGCNGCS MEME-1 Description -------------------------------------------------------------------------------- Simplified A 34::2::: pos.-specific C 2::a2:a4 probability G :4a:3a:6 matrix T 52::3::: bits 2.7 * ** 2.4 ** ** 2.2 ** ** 1.9 ** ** Relative 1.6 ** *** Entropy 1.4 ** *** (13.2 bits) 1.1 ** *** 0.8 ** *** 0.5 *** *** 0.3 **** *** 0.0 -------- Multilevel TGGCTGCG consensus AA G C sequence CT A C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDGCNGCS MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14170437-14170557 88 9.79e-07 TCTGGAAAGT CGGCGGCG TCACATATTT chr2L:2735087-2735207 102 9.79e-07 TACATTCTCG CGGCGGCG AACACAGTAA chr2R:22062596-22062716 103 1.67e-06 GCTGACTGAT TGGCCGCG TGCTCAGCAA chr3R:15347931-15348051 111 5.19e-06 TCGTGCTGAA TGGCTGCG AG chr2R:326550-326670 98 5.19e-06 TCCCAAGTCG AGGCGGCG CATCAGAGCA chr3R:29626050-29626170 99 6.58e-06 TCCCAGTGCA CGGCTGCG TGAGTGCGTG chrX:16930466-16930586 4 9.89e-06 TTA CAGCGGCG GTCAGCAGAC chr2R:10023907-10024027 75 1.53e-05 CAAACACAAA TGGCAGCg gaatggaaag chr2L:18153208-18153328 53 1.53e-05 AATGAGCTCA TAGCCGCG ATTACTTTCA chr3R:17526180-17526300 17 1.53e-05 GTGAAAGAAA TGGCAGCG ATACCATATA chr3L:14847492-14847612 26 2.36e-05 AATATTTTAT AGGCCGCC TATTTAAAAG chr3L:19598770-19598890 27 2.36e-05 CAGTGTGACC TTGCGGCG GAATTTAGCA chr3L:17529818-17529938 67 2.93e-05 ATACCCAAAC TAGCTGCG TGGCAAATTA chr2R:9291705-9291825 66 3.42e-05 AAAGCTAAGT TGGCAGCC CAGTTTAGTA chrX:10784890-10785010 29 3.42e-05 GCCGACAAGT CAGCTGCG AAGCAGACGG chr3L:10362784-10362904 23 3.72e-05 AAATGGACGT TTGCCGCG ATGACGAAGA chr3R:11661892-11662012 64 5.38e-05 GCGCGATGTT TAGCAGCG TATTATCATT chr3R:28556497-28556617 5 5.38e-05 ATAC AAGCGGCC AGAAATGAGG chr3L:3770950-3771070 10 5.38e-05 CTTAATTTA TAGCAGCG CTTTTCATGA chr3L:12805942-12806062 74 6.20e-05 CAAGTCTAAT TTGCTGCG CTTAATGTGT chr2L:8894380-8894500 19 6.20e-05 ATTTGTTTGA CAGCTGCC TGCATTAAAA chr3L:11351475-11351595 14 6.88e-05 TATATGATCA TTGCCGCC CTCTGTGGGG chr2R:18350013-18350133 102 7.28e-05 AATAAATATA AGGCAGCC GACCGCGAGA chr3R:30046791-30046911 15 7.28e-05 ACAAAACTCA AAGCCGCC GCTGCTAATT chr3R:26945375-26945495 24 8.83e-05 TCAACTGCTT ATGCGGCC CTGAAATTCA chrX:6179570-6179690 76 8.83e-05 TGTTTTTTTT TTGCTGCC AACTAACATA chr2R:18883619-18883739 38 9.89e-05 TGTGCGAAAA AAGCTGCC ATATATATTT chr3R:23110848-23110968 35 9.89e-05 TACACCTATT AAGCTGCC TAAAAGTAAG chr2L:1362380-1362500 72 1.21e-04 TTGAGCGCTT TGCCGGCG TTGCTCGATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDGCNGCS MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14170437-14170557 9.8e-07 87_[+1]_25 chr2L:2735087-2735207 9.8e-07 101_[+1]_11 chr2R:22062596-22062716 1.7e-06 102_[+1]_10 chr3R:15347931-15348051 5.2e-06 110_[+1]_2 chr2R:326550-326670 5.2e-06 97_[+1]_15 chr3R:29626050-29626170 6.6e-06 98_[+1]_14 chrX:16930466-16930586 9.9e-06 3_[+1]_109 chr2R:10023907-10024027 1.5e-05 74_[+1]_38 chr2L:18153208-18153328 1.5e-05 52_[+1]_60 chr3R:17526180-17526300 1.5e-05 16_[+1]_96 chr3L:14847492-14847612 2.4e-05 25_[+1]_87 chr3L:19598770-19598890 2.4e-05 26_[+1]_86 chr3L:17529818-17529938 2.9e-05 66_[+1]_46 chr2R:9291705-9291825 3.4e-05 65_[+1]_47 chrX:10784890-10785010 3.4e-05 28_[+1]_84 chr3L:10362784-10362904 3.7e-05 22_[+1]_90 chr3R:11661892-11662012 5.4e-05 63_[+1]_49 chr3R:28556497-28556617 5.4e-05 4_[+1]_108 chr3L:3770950-3771070 5.4e-05 9_[+1]_103 chr3L:12805942-12806062 6.2e-05 73_[+1]_39 chr2L:8894380-8894500 6.2e-05 18_[+1]_94 chr3L:11351475-11351595 6.9e-05 13_[+1]_99 chr2R:18350013-18350133 7.3e-05 101_[+1]_11 chr3R:30046791-30046911 7.3e-05 14_[+1]_98 chr3R:26945375-26945495 8.8e-05 23_[+1]_89 chrX:6179570-6179690 8.8e-05 75_[+1]_37 chr2R:18883619-18883739 9.9e-05 37_[+1]_75 chr3R:23110848-23110968 9.9e-05 34_[+1]_78 chr2L:1362380-1362500 0.00012 71_[+1]_41 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDGCNGCS MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF WDGCNGCS width=8 seqs=29 chr2R:14170437-14170557 ( 88) CGGCGGCG 1 chr2L:2735087-2735207 ( 102) CGGCGGCG 1 chr2R:22062596-22062716 ( 103) TGGCCGCG 1 chr3R:15347931-15348051 ( 111) TGGCTGCG 1 chr2R:326550-326670 ( 98) AGGCGGCG 1 chr3R:29626050-29626170 ( 99) CGGCTGCG 1 chrX:16930466-16930586 ( 4) CAGCGGCG 1 chr2R:10023907-10024027 ( 75) TGGCAGCG 1 chr2L:18153208-18153328 ( 53) TAGCCGCG 1 chr3R:17526180-17526300 ( 17) TGGCAGCG 1 chr3L:14847492-14847612 ( 26) AGGCCGCC 1 chr3L:19598770-19598890 ( 27) TTGCGGCG 1 chr3L:17529818-17529938 ( 67) TAGCTGCG 1 chr2R:9291705-9291825 ( 66) TGGCAGCC 1 chrX:10784890-10785010 ( 29) CAGCTGCG 1 chr3L:10362784-10362904 ( 23) TTGCCGCG 1 chr3R:11661892-11662012 ( 64) TAGCAGCG 1 chr3R:28556497-28556617 ( 5) AAGCGGCC 1 chr3L:3770950-3771070 ( 10) TAGCAGCG 1 chr3L:12805942-12806062 ( 74) TTGCTGCG 1 chr2L:8894380-8894500 ( 19) CAGCTGCC 1 chr3L:11351475-11351595 ( 14) TTGCCGCC 1 chr2R:18350013-18350133 ( 102) AGGCAGCC 1 chr3R:30046791-30046911 ( 15) AAGCCGCC 1 chr3R:26945375-26945495 ( 24) ATGCGGCC 1 chrX:6179570-6179690 ( 76) TTGCTGCC 1 chr2R:18883619-18883739 ( 38) AAGCTGCC 1 chr3R:23110848-23110968 ( 35) AAGCTGCC 1 chr2L:1362380-1362500 ( 72) TGCCGGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDGCNGCS MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.1765 E= 1.2e-003 -35 41 -1150 61 11 -1150 145 -72 -1150 -218 267 -1150 -1150 268 -1150 -1150 -77 41 86 -13 -1150 -1150 272 -1150 -1150 268 -1150 -1150 -1150 128 203 -1150 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDGCNGCS MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 1.2e-003 0.275862 0.206897 0.000000 0.517241 0.379310 0.000000 0.413793 0.206897 0.000000 0.034483 0.965517 0.000000 0.000000 1.000000 0.000000 0.000000 0.206897 0.206897 0.275862 0.310345 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.379310 0.620690 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif WDGCNGCS MEME-1 regular expression -------------------------------------------------------------------------------- [TAC][GAT]GC[TGAC]GC[GC] -------------------------------------------------------------------------------- Time 7.49 secs. ******************************************************************************** ******************************************************************************** MOTIF BTSGCCGG MEME-2 width = 8 sites = 18 llr = 177 E-value = 4.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif BTSGCCGG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::1:: pos.-specific C 4:4287:: probability G 3:682:a9 matrix T 3a:::2:1 bits 2.7 * 2.4 * 2.2 * ** 1.9 ** ** Relative 1.6 **** ** Entropy 1.4 ******* (14.2 bits) 1.1 ******* 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CTGGCCGG consensus T C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTSGCCGG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:15043966-15044086 111 6.89e-07 TCACTGACTT CTGGCCGG AG chr3R:30325593-30325713 109 2.07e-06 AAAGAAAACT CTCGCCGG GTTT chr2L:19121073-19121193 15 4.26e-06 TGCCAGTTAC TTGGCCGG AATTTCAAAA chr3R:10139849-10139969 76 5.80e-06 TATCACCTCT TTCGCCGG ATTTTTGAAG chr2R:23154686-23154806 113 5.80e-06 CACACTTTTT TTCGCCGG chrX:10786107-10786227 15 7.18e-06 TCATGTGCGA CTGGGCGG TAGAACAATC chrX:15996923-15997043 82 7.18e-06 CATGCTGGCA CTGCCCGG AATACTTTGA chr2R:15480276-15480396 100 9.94e-06 ATAAATAACG CTCGGCGG CTTGTTGTGC chr3L:13044447-13044567 93 1.28e-05 AACATTGTGC GTCCCCGG ATCAGAACTC chr3L:8093774-8093894 47 1.58e-05 TATTTATTAT TTGCCCGG CTTGATTGAG chr3L:549048-549168 87 1.88e-05 CGTCATCAGA GTGGCTGG AATTTGTTGT chr3L:6609331-6609451 7 1.88e-05 CATCAA CTGGCAGG TATTTTCAAA chr2R:9544161-9544281 106 1.88e-05 TTGTAGCCAT GTGGCTGG CGACCTA chr3L:17003678-17003798 6 2.04e-05 GGGCA CTCGCTGG GATCACATGC chr3R:5413106-5413226 17 2.65e-05 TTAATTTGTT TTCGGCGG TATATATATA chr3L:17529818-17529938 22 3.51e-05 CTGCTTGCGT GTGGCCGT TCGTTGGTGT chr3L:19260573-19260693 103 3.51e-05 CTGGAGCAGT GTGGCCGT AGGCGAGAGC chr3L:15988278-15988398 19 4.23e-05 TCCTCCGAAA TTGGCAGG TAAAACGCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTSGCCGG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:15043966-15044086 6.9e-07 110_[+2]_2 chr3R:30325593-30325713 2.1e-06 108_[+2]_4 chr2L:19121073-19121193 4.3e-06 14_[+2]_98 chr3R:10139849-10139969 5.8e-06 75_[+2]_37 chr2R:23154686-23154806 5.8e-06 112_[+2] chrX:10786107-10786227 7.2e-06 14_[+2]_98 chrX:15996923-15997043 7.2e-06 81_[+2]_31 chr2R:15480276-15480396 9.9e-06 99_[+2]_13 chr3L:13044447-13044567 1.3e-05 92_[+2]_20 chr3L:8093774-8093894 1.6e-05 46_[+2]_66 chr3L:549048-549168 1.9e-05 86_[+2]_26 chr3L:6609331-6609451 1.9e-05 6_[+2]_106 chr2R:9544161-9544281 1.9e-05 105_[+2]_7 chr3L:17003678-17003798 2e-05 5_[+2]_107 chr3R:5413106-5413226 2.7e-05 16_[+2]_96 chr3L:17529818-17529938 3.5e-05 21_[+2]_91 chr3L:19260573-19260693 3.5e-05 102_[+2]_10 chr3L:15988278-15988398 4.2e-05 18_[+2]_94 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTSGCCGG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF BTSGCCGG width=8 seqs=18 chrX:15043966-15044086 ( 111) CTGGCCGG 1 chr3R:30325593-30325713 ( 109) CTCGCCGG 1 chr2L:19121073-19121193 ( 15) TTGGCCGG 1 chr3R:10139849-10139969 ( 76) TTCGCCGG 1 chr2R:23154686-23154806 ( 113) TTCGCCGG 1 chrX:10786107-10786227 ( 15) CTGGGCGG 1 chrX:15996923-15997043 ( 82) CTGCCCGG 1 chr2R:15480276-15480396 ( 100) CTCGGCGG 1 chr3L:13044447-13044567 ( 93) GTCCCCGG 1 chr3L:8093774-8093894 ( 47) TTGCCCGG 1 chr3L:549048-549168 ( 87) GTGGCTGG 1 chr3L:6609331-6609451 ( 7) CTGGCAGG 1 chr2R:9544161-9544281 ( 106) GTGGCTGG 1 chr3L:17003678-17003798 ( 6) CTCGCTGG 1 chr3R:5413106-5413226 ( 17) TTCGGCGG 1 chr3L:17529818-17529938 ( 22) GTGGCCGT 1 chr3L:19260573-19260693 ( 103) GTGGCCGT 1 chr3L:15988278-15988398 ( 19) TTGGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTSGCCGG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 4.7e+000 -1081 132 87 -3 -1081 -1081 -1081 156 -1081 132 201 -1081 -1081 10 246 -1081 -1081 242 14 -1081 -166 221 -1081 -103 -1081 -1081 272 -1081 -1081 -1081 255 -161 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTSGCCGG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 4.7e+000 0.000000 0.388889 0.277778 0.333333 0.000000 0.000000 0.000000 1.000000 0.000000 0.388889 0.611111 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.833333 0.166667 0.000000 0.111111 0.722222 0.000000 0.166667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.888889 0.111111 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif BTSGCCGG MEME-2 regular expression -------------------------------------------------------------------------------- [CTG]T[GC]GCCGG -------------------------------------------------------------------------------- Time 13.71 secs. ******************************************************************************** ******************************************************************************** MOTIF GKTGGCGC MEME-3 width = 8 sites = 7 llr = 82 E-value = 6.1e+002 ******************************************************************************** -------------------------------------------------------------------------------- Motif GKTGGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::1a:a probability G 761a9:a: matrix T 349::::: bits 2.7 * *** 2.4 * *** 2.2 ***** 1.9 ***** Relative 1.6 * ***** Entropy 1.4 ** ***** (16.8 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGTGGCGC consensus TT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12805942-12806062 44 6.71e-07 CGTATTAATA GGTGGCGC GGTAAAAATC chr2R:9820143-9820263 99 6.71e-07 TTATCGGCTA GGTGGCGC TCTATTTCGA chrX:3288945-3289065 66 2.47e-06 AGTCACTTGT GTTGGCGC CTCTTATCAG chr2L:1362380-1362500 23 3.97e-06 GGATTCCGTT TGTGGCGC CATCTCTTCG chrX:3841052-3841172 24 3.97e-06 GCCAGCATTT TGTGGCGC GACTTTTGGG chr2R:19455987-19456107 66 5.34e-06 CAATCAGTCT GTGGGCGC GGTTTTTAGA chr3R:22781619-22781739 65 1.12e-05 TCAGATTGTC GTTGCCGC TCGCGTATTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12805942-12806062 6.7e-07 43_[+3]_69 chr2R:9820143-9820263 6.7e-07 98_[+3]_14 chrX:3288945-3289065 2.5e-06 65_[+3]_47 chr2L:1362380-1362500 4e-06 22_[+3]_90 chrX:3841052-3841172 4e-06 23_[+3]_89 chr2R:19455987-19456107 5.3e-06 65_[+3]_47 chr3R:22781619-22781739 1.1e-05 64_[+3]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GKTGGCGC width=8 seqs=7 chr3L:12805942-12806062 ( 44) GGTGGCGC 1 chr2R:9820143-9820263 ( 99) GGTGGCGC 1 chrX:3288945-3289065 ( 66) GTTGGCGC 1 chr2L:1362380-1362500 ( 23) TGTGGCGC 1 chrX:3841052-3841172 ( 24) TGTGGCGC 1 chr2R:19455987-19456107 ( 66) GTGGGCGC 1 chr3R:22781619-22781739 ( 65) GTTGCCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.2008 E= 6.1e+002 -945 -945 223 -25 -945 -945 191 33 -945 -945 -9 133 -945 -945 272 -945 -945 -13 250 -945 -945 268 -945 -945 -945 -945 272 -945 -945 268 -945 -945 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 6.1e+002 0.000000 0.000000 0.714286 0.285714 0.000000 0.000000 0.571429 0.428571 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.142857 0.857143 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GKTGGCGC MEME-3 regular expression -------------------------------------------------------------------------------- [GT][GT]TGGCGC -------------------------------------------------------------------------------- Time 19.90 secs. ******************************************************************************** ******************************************************************************** MOTIF CGRGCGGG MEME-4 width = 8 sites = 2 llr = 28 E-value = 9.8e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGRGCGGG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::5::::: pos.-specific C a:::a::: probability G :a5a:aaa matrix T :::::::: bits 2.7 ** ***** 2.4 ** ***** 2.2 ** ***** 1.9 ** ***** Relative 1.6 ** ***** Entropy 1.4 ** ***** (20.1 bits) 1.1 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CGAGCGGG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRGCGGG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17003678-17003798 100 3.00e-07 TACATAAATA CGGGCGGG CATGCATAAT chr3L:19260573-19260693 20 9.95e-07 TTGATGAAAG CGAGCGGG AGCAACAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRGCGGG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17003678-17003798 3e-07 99_[+4]_13 chr3L:19260573-19260693 1e-06 19_[+4]_93 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRGCGGG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGRGCGGG width=8 seqs=2 chr3L:17003678-17003798 ( 100) CGGGCGGG 1 chr3L:19260573-19260693 ( 20) CGAGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRGCGGG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.9378 E= 9.8e+003 -765 267 -765 -765 -765 -765 271 -765 50 -765 172 -765 -765 -765 271 -765 -765 267 -765 -765 -765 -765 271 -765 -765 -765 271 -765 -765 -765 271 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRGCGGG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 9.8e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGRGCGGG MEME-4 regular expression -------------------------------------------------------------------------------- CG[AG]GCGGG -------------------------------------------------------------------------------- Time 26.08 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGGTGC MEME-5 width = 8 sites = 5 llr = 59 E-value = 1.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGGTGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::2:: pos.-specific C :a::2:2a probability G a::a8:8: matrix T ::a::8:: bits 2.7 ** * * 2.4 ** * * 2.2 ** * * 1.9 ** ** ** Relative 1.6 ***** ** Entropy 1.4 ***** ** (17.2 bits) 1.1 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCTGGTGC consensus CAC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGTGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22781619-22781739 106 1.50e-06 GTCTCCTTGG GCTGGTGC AACTGTG chr2L:7443013-7443133 17 1.50e-06 ACTCTTCTTT GCTGGTGC TTTTAATATT chr3L:13044447-13044567 21 6.14e-06 TGCTCAGTGG GCTGCTGC TTCTGCTGCA chr3L:12269984-12270104 105 6.14e-06 AAATGAATAT GCTGGTCC CTGAATAT chr3L:20519243-20519363 48 6.14e-06 GAAGCCAACC GCTGGAGC TCCGAAATAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGTGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22781619-22781739 1.5e-06 105_[+5]_7 chr2L:7443013-7443133 1.5e-06 16_[+5]_96 chr3L:13044447-13044567 6.1e-06 20_[+5]_92 chr3L:12269984-12270104 6.1e-06 104_[+5]_8 chr3L:20519243-20519363 6.1e-06 47_[+5]_65 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGTGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGGTGC width=8 seqs=5 chr3R:22781619-22781739 ( 106) GCTGGTGC 1 chr2L:7443013-7443133 ( 17) GCTGGTGC 1 chr3L:13044447-13044567 ( 21) GCTGCTGC 1 chr3L:12269984-12270104 ( 105) GCTGGTCC 1 chr3L:20519243-20519363 ( 48) GCTGGAGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGTGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7154 E= 1.1e+004 -897 -897 272 -897 -897 268 -897 -897 -897 -897 -897 155 -897 -897 272 -897 -897 36 240 -897 -81 -897 -897 123 -897 36 240 -897 -897 268 -897 -897 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGTGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.200000 0.800000 0.000000 0.200000 0.000000 0.000000 0.800000 0.000000 0.200000 0.800000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGGTGC MEME-5 regular expression -------------------------------------------------------------------------------- GCTG[GC][TA][GC]C -------------------------------------------------------------------------------- Time 32.29 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:17412637-17412757 1.17e-01 120 chr3R:16558930-16559050 3.28e-02 120 chr3R:23110848-23110968 2.04e-01 34_[+1(9.89e-05)]_78 chrX:15996923-15997043 2.12e-04 81_[+2(7.18e-06)]_31 chr3L:2411058-2411178 3.55e-01 120 chr2R:9544161-9544281 2.13e-05 21_[+3(1.91e-05)]_76_[+2(1.88e-05)]_\ 7 chr2R:22882691-22882811 9.14e-01 120 chr2R:12218889-12219009 9.99e-01 120 chr2L:17558189-17558309 1.00e+00 120 chr3L:19216576-19216696 2.24e-01 120 chr2R:18374547-18374667 9.99e-01 120 chr2R:15537980-15538100 1.46e-01 120 chr2R:16660230-16660350 9.13e-01 120 chr2L:18965740-18965860 2.60e-01 120 chr3L:1609726-1609846 1.33e-01 120 chr3L:19969289-19969409 1.00e+00 120 chr2R:326550-326670 5.50e-05 97_[+1(5.19e-06)]_15 chr3L:19598770-19598890 1.83e-03 26_[+1(2.36e-05)]_86 chr3L:4445955-4446075 9.96e-01 120 chrX:18004378-18004498 1.45e-01 120 chr2L:7443013-7443133 1.84e-03 16_[+5(1.50e-06)]_96 chr2L:18658195-18658315 2.53e-01 120 chrX:9004500-9004620 2.81e-01 120 chrX:3288945-3289065 1.80e-04 65_[+3(2.47e-06)]_47 chrX:15120193-15120313 3.02e-01 120 chr2R:9756281-9756401 8.94e-01 120 chr2R:14698970-14699090 8.60e-01 120 chr3R:14542173-14542293 1.00e+00 120 chr3L:3411861-3411981 8.53e-01 120 chr2R:15155033-15155153 1.00e+00 120 chr3L:10599676-10599796 7.91e-01 120 chr3R:25152426-25152546 6.02e-01 120 chr3R:14912703-14912823 4.41e-02 120 chrX:6179570-6179690 1.52e-02 75_[+1(8.83e-05)]_37 chrX:12547161-12547281 5.48e-04 5_[+4(1.36e-05)]_107 chr3L:14847492-14847612 7.59e-03 25_[+1(2.36e-05)]_87 chr2L:20951443-20951563 8.53e-01 120 chrX:17694961-17695081 8.54e-01 120 chr2L:7675516-7675636 9.05e-01 120 chr3L:3381997-3382117 5.18e-01 120 chr3R:12562109-12562229 9.35e-01 120 chr3R:17526180-17526300 1.86e-02 16_[+1(1.53e-05)]_96 chr2R:23154686-23154806 3.19e-02 112_[+2(5.80e-06)] chr3L:917353-917473 9.84e-01 120 chr2L:6921813-6921933 9.55e-03 120 chrX:11156338-11156458 9.81e-01 120 chr3L:21859787-21859907 1.00e+00 120 chr3L:8028815-8028935 2.49e-01 120 chr2R:16142110-16142230 9.52e-01 120 chr3L:16657009-16657129 5.84e-01 120 chr3R:21420083-21420203 9.56e-01 120 chr2L:14887612-14887732 5.22e-01 120 chr2L:18153208-18153328 2.42e-02 52_[+1(1.53e-05)]_60 chr3L:13903392-13903512 6.10e-01 120 chr2L:13461007-13461127 8.93e-01 120 chr2L:18119829-18119949 5.53e-01 120 chr2R:15480276-15480396 1.49e-03 99_[+2(9.94e-06)]_13 chr2L:2348661-2348781 2.92e-01 120 chrX:14169216-14169336 6.92e-01 120 chrX:12937984-12938104 4.21e-02 87_[+3(1.91e-05)]_25 chr3R:15347931-15348051 3.95e-03 110_[+1(5.19e-06)]_2 chr2L:7091053-7091173 1.00e+00 120 chr3L:11322575-11322695 3.93e-01 120 chr2L:1048412-1048532 7.89e-01 120 chr3R:24467422-24467542 9.38e-01 120 chr2R:21991104-21991224 6.93e-02 120 chr3R:14875671-14875791 4.27e-01 120 chrX:6067559-6067679 4.35e-01 120 chr2L:7223133-7223253 1.00e+00 120 chr3L:10362784-10362904 8.25e-05 21_[+3(1.91e-05)]_91 chr2R:9820143-9820263 4.98e-05 98_[+3(6.71e-07)]_14 chr3R:31127550-31127670 7.44e-02 34_[+2(8.63e-05)]_78 chr3R:20908764-20908884 7.07e-01 120 chrX:17330434-17330554 8.51e-01 120 chr2L:8746369-8746489 4.44e-02 120 chrX:10784890-10785010 1.90e-02 28_[+1(3.42e-05)]_84 chr3L:8509804-8509924 9.42e-01 120 chr3L:15034513-15034633 8.00e-01 120 chr3R:29626050-29626170 4.93e-04 98_[+1(6.58e-06)]_14 chr2L:11902616-11902736 2.23e-02 120 chr2R:9291705-9291825 4.59e-05 65_[+1(3.42e-05)]_14_[+4(4.05e-05)]_\ 25 chr3L:11351475-11351595 5.55e-03 13_[+1(6.88e-05)]_99 chr3R:18438884-18439004 4.75e-01 120 chr3R:29978697-29978817 9.75e-01 120 chr3R:30046791-30046911 1.27e-03 14_[+1(7.28e-05)]_98 chr2R:24139222-24139342 4.16e-01 120 chr3L:16147943-16148063 6.71e-01 120 chr3L:16870800-16870920 9.97e-01 120 chr2L:273738-273858 9.96e-01 120 chr3L:13993892-13994012 1.00e+00 120 chr3L:5182382-5182502 9.97e-01 120 chr2R:16581719-16581839 6.06e-01 120 chrX:9119419-9119539 5.28e-01 120 chr3R:16151605-16151725 2.23e-01 120 chr3L:11580072-11580192 7.63e-01 120 chr3L:19338409-19338529 9.94e-01 120 chr2L:6794985-6795105 1.99e-01 120 chr3R:26333473-26333593 9.58e-01 120 chr2L:2735087-2735207 2.82e-05 22_[+1(5.38e-05)]_71_[+1(9.79e-07)]_\ 11 chr3R:23612213-23612333 6.30e-01 120 chrX:4762404-4762524 7.61e-02 120 chr3R:26945375-26945495 1.81e-02 23_[+1(8.83e-05)]_89 chr3R:16476556-16476676 8.61e-01 120 chr3R:25855676-25855796 4.47e-01 120 chr3R:11243138-11243258 2.12e-01 120 chr2R:21091806-21091926 1.56e-01 120 chr2R:11602024-11602144 9.92e-01 120 chr3L:17113354-17113474 7.59e-01 120 chr3L:2913431-2913551 9.12e-01 120 chr2L:14394860-14394980 9.34e-01 120 chr2L:8894380-8894500 1.33e-02 18_[+1(6.20e-05)]_54_[+1(8.83e-05)]_\ 32 chr3R:28677736-28677856 3.74e-01 120 chr3L:9838708-9838828 4.65e-01 120 chr2R:7054326-7054446 8.47e-01 120 chr2R:9388675-9388795 8.21e-01 120 chr2L:892597-892717 9.85e-02 120 chr3R:28118199-28118319 9.79e-01 120 chr2L:7871950-7872070 9.08e-01 120 chr3R:7892830-7892950 9.73e-01 120 chr3R:25056257-25056377 2.74e-01 120 chrX:10628982-10629102 1.00e+00 120 chr2R:10395508-10395628 9.96e-01 120 chr2R:7879116-7879236 9.64e-01 120 chr3L:12805942-12806062 3.28e-06 43_[+3(6.71e-07)]_22_[+1(6.20e-05)]_\ 39 chr2R:22608377-22608497 9.84e-01 120 chr2L:12542149-12542269 9.98e-01 120 chr2R:14170437-14170557 8.59e-06 87_[+1(9.79e-07)]_25 chrX:12547790-12547910 6.92e-01 120 chr3L:12275806-12275926 9.98e-01 120 chr2R:18273463-18273583 6.50e-01 120 chr3L:17310646-17310766 4.49e-01 120 chr3R:21852722-21852842 9.51e-01 120 chr3L:20519243-20519363 3.80e-03 47_[+5(6.14e-06)]_65 chr2L:19019182-19019302 9.75e-01 120 chrX:2790188-2790308 5.21e-02 120 chr3L:21042640-21042760 2.25e-01 120 chr3L:40218-40338 2.49e-01 120 chr2R:14305188-14305308 9.92e-01 120 chrX:16580045-16580165 5.85e-01 120 chr2L:3938964-3939084 6.07e-01 120 chr4:558764-558884 2.95e-01 120 chr3L:14559810-14559930 9.80e-01 120 chr3R:10688972-10689092 8.39e-01 120 chrX:17726622-17726742 3.13e-01 120 chr2L:937005-937125 1.46e-02 120 chr3R:9237832-9237952 7.51e-01 120 chrX:17465635-17465755 1.48e-02 1_[+5(6.35e-05)]_111 chr3L:15275606-15275726 9.62e-01 120 chrX:3841052-3841172 1.72e-04 23_[+3(3.97e-06)]_89 chr3L:11450678-11450798 1.52e-01 120 chr3R:27289740-27289860 5.48e-02 120 chr3R:25275441-25275561 3.29e-01 120 chrX:12699255-12699375 1.17e-01 51_[+5(3.05e-05)]_61 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chr2R:8122978-8123098 4.33e-02 120 chr3R:8030633-8030753 4.54e-01 120 chr3L:15144319-15144439 5.15e-02 120 chr3L:17596992-17597112 8.19e-01 120 chr2R:22657290-22657410 9.98e-01 120 chr3L:797065-797185 9.04e-01 120 chr3L:8024866-8024986 1.15e-01 120 chrX:6375753-6375873 3.31e-01 120 chr2L:6967795-6967915 3.46e-01 120 chr2R:13586418-13586538 4.06e-01 120 chr3L:13044447-13044567 8.84e-06 20_[+5(6.14e-06)]_64_[+2(1.28e-05)]_\ 20 chr2L:10698139-10698259 9.98e-01 120 chrX:21375778-21375898 1.00e+00 120 chr2R:10023907-10024027 8.96e-04 53_[+4(7.84e-05)]_13_[+1(1.53e-05)]_\ 38 chr2L:7601967-7602087 6.00e-01 120 chr3R:28556497-28556617 1.52e-02 4_[+1(5.38e-05)]_108 chr2R:13261813-13261933 9.79e-01 120 chr2L:17588755-17588875 9.48e-01 120 chr2L:1362380-1362500 1.29e-04 22_[+3(3.97e-06)]_90 chr3L:15988278-15988398 6.17e-04 18_[+2(4.23e-05)]_94 chrX:6657073-6657193 9.76e-01 120 chr3R:11661892-11662012 5.42e-02 63_[+1(5.38e-05)]_49 chr3R:22781619-22781739 5.71e-07 64_[+3(1.12e-05)]_33_[+5(1.50e-06)]_\ 7 chr3R:5413106-5413226 1.88e-02 16_[+2(2.65e-05)]_96 chr2R:18883619-18883739 3.33e-01 37_[+1(9.89e-05)]_75 chr3L:5554482-5554602 9.15e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n04.farnam.hpc.yale.internal ********************************************************************************