******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Bteb2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:10688931-10689051 1.0000 120 chr2L:16251975-16252095 1.0000 120 chrX:4762449-4762569 1.0000 120 chr3L:19929475-19929595 1.0000 120 chr2R:22661342-22661462 1.0000 120 chr3L:16582857-16582977 1.0000 120 chr2R:23551174-23551294 1.0000 120 chr4:557995-558115 1.0000 120 chrX:18407490-18407610 1.0000 120 chr3R:7913274-7913394 1.0000 120 chr2R:18603915-18604035 1.0000 120 chrX:18366661-18366781 1.0000 120 chr3L:12350451-12350571 1.0000 120 chr2R:12537652-12537772 1.0000 120 chr3L:7243893-7244013 1.0000 120 chr2R:12198824-12198944 1.0000 120 chr3R:26099388-26099508 1.0000 120 chrX:8493611-8493731 1.0000 120 chr2R:21090960-21091080 1.0000 120 chr2L:14499234-14499354 1.0000 120 chrX:4590686-4590806 1.0000 120 chr3L:1609674-1609794 1.0000 120 chr3R:31603817-31603937 1.0000 120 chr2L:1650160-1650280 1.0000 120 chr2R:12173431-12173551 1.0000 120 chr2L:12063256-12063376 1.0000 120 chr3R:7500682-7500802 1.0000 120 chr3R:15347903-15348023 1.0000 120 chrX:17330429-17330549 1.0000 120 chr2R:25183128-25183248 1.0000 120 chr3R:28545057-28545177 1.0000 120 chr2R:17140294-17140414 1.0000 120 chr3R:7092103-7092223 1.0000 120 chr3L:9838657-9838777 1.0000 120 chrX:19146499-19146619 1.0000 120 chr3L:7013593-7013713 1.0000 120 chr3R:30200133-30200253 1.0000 120 chr2L:18625156-18625276 1.0000 120 chrX:6663311-6663431 1.0000 120 chrX:9120970-9121090 1.0000 120 chr3L:16160185-16160305 1.0000 120 chrX:3745316-3745436 1.0000 120 chrX:13817582-13817702 1.0000 120 chr2L:11221608-11221728 1.0000 120 chr2R:7510214-7510334 1.0000 120 chr2R:13909045-13909165 1.0000 120 chr2L:2992849-2992969 1.0000 120 chr2R:9950351-9950471 1.0000 120 chr3L:20432444-20432564 1.0000 120 chr2L:20390119-20390239 1.0000 120 chr2L:9614106-9614226 1.0000 120 chrX:3403576-3403696 1.0000 120 chr2L:13512282-13512402 1.0000 120 chr2L:8461898-8462018 1.0000 120 chr2R:18273413-18273533 1.0000 120 chr2R:23615212-23615332 1.0000 120 chrX:19348997-19349117 1.0000 120 chr3L:3760771-3760891 1.0000 120 chr2R:22562075-22562195 1.0000 120 chr2L:1628276-1628396 1.0000 120 chr3R:18585696-18585816 1.0000 120 chr3L:639841-639961 1.0000 120 chr3R:21161847-21161967 1.0000 120 chr3R:14741501-14741621 1.0000 120 chrX:14169198-14169318 1.0000 120 chr3L:3224828-3224948 1.0000 120 chr3R:8930329-8930449 1.0000 120 chr2R:17698945-17699065 1.0000 120 chr2L:3477387-3477507 1.0000 120 chr3R:8801379-8801499 1.0000 120 chr2L:4403148-4403268 1.0000 120 chr3L:17007134-17007254 1.0000 120 chr2L:13367475-13367595 1.0000 120 chr3R:4775456-4775576 1.0000 120 chr2L:18136702-18136822 1.0000 120 chr3L:3544400-3544520 1.0000 120 chr3L:15825496-15825616 1.0000 120 chr2L:11199227-11199347 1.0000 120 chr3R:8256205-8256325 1.0000 120 chr3R:24580607-24580727 1.0000 120 chr2R:16856725-16856845 1.0000 120 chr2R:13261890-13262010 1.0000 120 chr3R:9430445-9430565 1.0000 120 chr2R:14575973-14576093 1.0000 120 chr3R:6170873-6170993 1.0000 120 chr3R:30802298-30802418 1.0000 120 chr3R:16264022-16264142 1.0000 120 chr3L:9691299-9691419 1.0000 120 chr2L:10698149-10698269 1.0000 120 chr3L:3933017-3933137 1.0000 120 chr3L:12803800-12803920 1.0000 120 chr3L:8720191-8720311 1.0000 120 chr3R:19875674-19875794 1.0000 120 chr3R:16704369-16704489 1.0000 120 chr3L:8440958-8441078 1.0000 120 chr2L:21149212-21149332 1.0000 120 chrX:11325301-11325421 1.0000 120 chr3L:15967975-15968095 1.0000 120 chr2L:6717538-6717658 1.0000 120 chr3L:19016670-19016790 1.0000 120 chr2R:24139274-24139394 1.0000 120 chr3L:11785395-11785515 1.0000 120 chr3R:12985911-12986031 1.0000 120 chr3R:5103839-5103959 1.0000 120 chr3L:3770982-3771102 1.0000 120 chr3L:19909356-19909476 1.0000 120 chr3L:7861166-7861286 1.0000 120 chr2L:7204279-7204399 1.0000 120 chr3L:16149935-16150055 1.0000 120 chr3R:30134776-30134896 1.0000 120 chr3L:9358792-9358912 1.0000 120 chr2R:21663157-21663277 1.0000 120 chrX:5897127-5897247 1.0000 120 chrX:13376650-13376770 1.0000 120 chr2R:22508152-22508272 1.0000 120 chr2R:17514133-17514253 1.0000 120 chr3L:21011402-21011522 1.0000 120 chr2R:9444492-9444612 1.0000 120 chr3R:24518138-24518258 1.0000 120 chr3R:26104481-26104601 1.0000 120 chr2L:9775293-9775413 1.0000 120 chr2L:6622776-6622896 1.0000 120 chr2L:5972182-5972302 1.0000 120 chr2R:22062501-22062621 1.0000 120 chr3L:4522025-4522145 1.0000 120 chr2R:24893752-24893872 1.0000 120 chr2R:24571691-24571811 1.0000 120 chr3L:13015315-13015435 1.0000 120 chr3R:28327358-28327478 1.0000 120 chr3L:14776109-14776229 1.0000 120 chr3L:5926108-5926228 1.0000 120 chr3L:19897253-19897373 1.0000 120 chr2L:12056190-12056310 1.0000 120 chr2R:12772777-12772897 1.0000 120 chr2R:20319523-20319643 1.0000 120 chr2L:13082323-13082443 1.0000 120 chrX:16834295-16834415 1.0000 120 chr3L:16571563-16571683 1.0000 120 chr3L:94225-94345 1.0000 120 chr2R:17564745-17564865 1.0000 120 chr2L:14377049-14377169 1.0000 120 chr3R:9370523-9370643 1.0000 120 chr3L:3450538-3450658 1.0000 120 chr3R:30304993-30305113 1.0000 120 chr2L:8894290-8894410 1.0000 120 chr2L:15254412-15254532 1.0000 120 chr3R:13030715-13030835 1.0000 120 chr3R:9494444-9494564 1.0000 120 chr3L:4353903-4354023 1.0000 120 chr2L:18688787-18688907 1.0000 120 chr2R:16170818-16170938 1.0000 120 chr3L:11708606-11708726 1.0000 120 chr3R:15330601-15330721 1.0000 120 chr3L:4379054-4379174 1.0000 120 chr2L:7702459-7702579 1.0000 120 chr3L:699276-699396 1.0000 120 chr2L:19490252-19490372 1.0000 120 chr2L:19140904-19141024 1.0000 120 chr3R:31793786-31793906 1.0000 120 chr3R:29068932-29069052 1.0000 120 chr3R:5660252-5660372 1.0000 120 chr2L:4224274-4224394 1.0000 120 chr2L:8982683-8982803 1.0000 120 chr2L:13833121-13833241 1.0000 120 chr2R:24763025-24763145 1.0000 120 chr3R:30815004-30815124 1.0000 120 chr3R:18215479-18215599 1.0000 120 chr3R:15472808-15472928 1.0000 120 chr3L:3543083-3543203 1.0000 120 chr3L:19910241-19910361 1.0000 120 chr3R:29062974-29063094 1.0000 120 chr3R:18399569-18399689 1.0000 120 chr2L:7494319-7494439 1.0000 120 chr2L:20918927-20919047 1.0000 120 chrX:1392932-1393052 1.0000 120 chr2L:11417646-11417766 1.0000 120 chrX:19166380-19166500 1.0000 120 chr3L:8395670-8395790 1.0000 120 chr3R:10161295-10161415 1.0000 120 chrX:10628965-10629085 1.0000 120 chr3L:13486719-13486839 1.0000 120 chr3L:16045359-16045479 1.0000 120 chr3L:18672304-18672424 1.0000 120 chr3L:11303987-11304107 1.0000 120 chr2L:13219823-13219943 1.0000 120 chr2L:8350632-8350752 1.0000 120 chr2L:3173022-3173142 1.0000 120 chr3R:23760571-23760691 1.0000 120 chr2L:8554335-8554455 1.0000 120 chr2L:18328826-18328946 1.0000 120 chr3L:9847550-9847670 1.0000 120 chr2R:6741937-6742057 1.0000 120 chr2L:8602806-8602926 1.0000 120 chr2R:9971174-9971294 1.0000 120 chr2R:17161041-17161161 1.0000 120 chr2R:14362979-14363099 1.0000 120 chrX:8574806-8574926 1.0000 120 chr2L:20807706-20807826 1.0000 120 chr2L:4971621-4971741 1.0000 120 chr2L:203662-203782 1.0000 120 chr3L:16165782-16165902 1.0000 120 chr3R:8563958-8564078 1.0000 120 chr3L:19586161-19586281 1.0000 120 chr2L:7957083-7957203 1.0000 120 chr2L:21156243-21156363 1.0000 120 chr3L:1295748-1295868 1.0000 120 chr2L:12542083-12542203 1.0000 120 chr2R:17848881-17849001 1.0000 120 chr3L:20395356-20395476 1.0000 120 chr3R:6007539-6007659 1.0000 120 chr2R:23868635-23868755 1.0000 120 chr3R:30015311-30015431 1.0000 120 chr2L:10516919-10517039 1.0000 120 chr3R:9038827-9038947 1.0000 120 chr4:226001-226121 1.0000 120 chr2R:18775075-18775195 1.0000 120 chr3R:29039762-29039882 1.0000 120 chrX:19643269-19643389 1.0000 120 chr3R:30195749-30195869 1.0000 120 chrX:487587-487707 1.0000 120 chr3L:7435062-7435182 1.0000 120 chr3R:21112474-21112594 1.0000 120 chr2L:6339626-6339746 1.0000 120 chr3L:3305509-3305629 1.0000 120 chr3L:21034414-21034534 1.0000 120 chr2L:8488885-8489005 1.0000 120 chr2L:10760780-10760900 1.0000 120 chr2L:3629639-3629759 1.0000 120 chr3R:15792556-15792676 1.0000 120 chr2R:11809486-11809606 1.0000 120 chrX:3431821-3431941 1.0000 120 chr3L:12336398-12336518 1.0000 120 chr3R:6406640-6406760 1.0000 120 chr3R:17680884-17681004 1.0000 120 chr3R:23028635-23028755 1.0000 120 chrX:11854908-11855028 1.0000 120 chr2L:11829374-11829494 1.0000 120 chr2R:21060540-21060660 1.0000 120 chr3L:16385935-16386055 1.0000 120 chr3R:26888454-26888574 1.0000 120 chr3L:17912727-17912847 1.0000 120 chr2R:17545097-17545217 1.0000 120 chr3L:5789850-5789970 1.0000 120 chr3L:3197630-3197750 1.0000 120 chr3L:9899227-9899347 1.0000 120 chrX:17696743-17696863 1.0000 120 chrX:20257317-20257437 1.0000 120 chr3R:14625635-14625755 1.0000 120 chr3L:4186830-4186950 1.0000 120 chr2L:4394014-4394134 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Bteb2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Bteb2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.33 C 0.175 G 0.173 T 0.321 Background letter frequencies (from file dataset with add-one prior applied): A 0.33 C 0.175 G 0.173 T 0.321 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GYGTTGCC MEME-1 width = 8 sites = 18 llr = 179 E-value = 1.7e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYGTTGCC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 16:3::8a probability G 92a11a2: matrix T :3:69::: bits 2.5 * * * 2.3 * * * * 2.0 * * * * 1.8 * * *** Relative 1.5 * * *** Entropy 1.3 * * **** (14.3 bits) 1.0 * * **** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCGTTGCC consensus T C G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTGCC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:12336398-12336518 34 2.86e-06 CGACGACAAA GCGTTGCC ACATGGATAG chrX:1392932-1393052 24 2.86e-06 AAACGAATTG GCGTTGCC CAACACTGAC chr2L:18688787-18688907 22 2.86e-06 CGTTTTGCTG GCGTTGCC ACTTTTCGCC chr2R:17514133-17514253 12 2.86e-06 CCTGTTAAAA GCGTTGCC AGATGCGGAT chr3L:7243893-7244013 101 2.86e-06 ACTGCATTGA GCGTTGCC AGGTGGACTC chr3R:16264022-16264142 57 4.42e-06 CTACTGAGCA GCGCTGCC AGATTCGGTA chr3L:21034414-21034534 102 8.79e-06 TGGTCACACT GCGGTGCC CCCCAGCACG chr3R:10161295-10161415 35 1.84e-05 AAAAATACCA GGGCTGCC AGCTACACAA chr2R:22562075-22562195 15 1.84e-05 CTGGCCGGCG GTGTTGCC ACATCGCTGG chr3R:7913274-7913394 27 1.84e-05 TGTTGCCTTC GGGCTGCC AACCTGTTTC chr2L:11829374-11829494 65 2.43e-05 CCATTGCGCA GCGTGGCC ACCTGGTCAC chr3L:11708606-11708726 51 2.43e-05 TGCTGCGTAA GTGCTGCC GGATCGAGCG chr3L:9899227-9899347 19 3.10e-05 ACCCAAGCCA GGGTTGGC TTGTGCGTTT chr2L:8350632-8350752 34 3.10e-05 AAAAAACGAG GCGGTGGC ATACTTTTAG chr3L:4186830-4186950 7 4.06e-05 TCATCT GTGTTGGC GGAAATCTAC chr3R:26099388-26099508 108 4.73e-05 GTTTTAAGAT GTGCTGGC AACTC chr3L:14776109-14776229 6 5.38e-05 TTGCA GTGTGGCC GTTTCAGCTT chr3L:8440958-8441078 96 5.38e-05 CGCCGCAGCG CCGTTGCC TTTGACTTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTGCC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:12336398-12336518 2.9e-06 33_[+1]_79 chrX:1392932-1393052 2.9e-06 23_[+1]_89 chr2L:18688787-18688907 2.9e-06 21_[+1]_91 chr2R:17514133-17514253 2.9e-06 11_[+1]_101 chr3L:7243893-7244013 2.9e-06 100_[+1]_12 chr3R:16264022-16264142 4.4e-06 56_[+1]_56 chr3L:21034414-21034534 8.8e-06 101_[+1]_11 chr3R:10161295-10161415 1.8e-05 34_[+1]_78 chr2R:22562075-22562195 1.8e-05 14_[+1]_98 chr3R:7913274-7913394 1.8e-05 26_[+1]_86 chr2L:11829374-11829494 2.4e-05 64_[+1]_48 chr3L:11708606-11708726 2.4e-05 50_[+1]_62 chr3L:9899227-9899347 3.1e-05 18_[+1]_94 chr2L:8350632-8350752 3.1e-05 33_[+1]_79 chr3L:4186830-4186950 4.1e-05 6_[+1]_106 chr3R:26099388-26099508 4.7e-05 107_[+1]_5 chr3L:14776109-14776229 5.4e-05 5_[+1]_107 chr3L:8440958-8441078 5.4e-05 95_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTGCC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYGTTGCC width=8 seqs=18 chr3L:12336398-12336518 ( 34) GCGTTGCC 1 chrX:1392932-1393052 ( 24) GCGTTGCC 1 chr2L:18688787-18688907 ( 22) GCGTTGCC 1 chr2R:17514133-17514253 ( 12) GCGTTGCC 1 chr3L:7243893-7244013 ( 101) GCGTTGCC 1 chr3R:16264022-16264142 ( 57) GCGCTGCC 1 chr3L:21034414-21034534 ( 102) GCGGTGCC 1 chr3R:10161295-10161415 ( 35) GGGCTGCC 1 chr2R:22562075-22562195 ( 15) GTGTTGCC 1 chr3R:7913274-7913394 ( 27) GGGCTGCC 1 chr2L:11829374-11829494 ( 65) GCGTGGCC 1 chr3L:11708606-11708726 ( 51) GTGCTGCC 1 chr3L:9899227-9899347 ( 19) GGGTTGGC 1 chr2L:8350632-8350752 ( 34) GCGGTGGC 1 chr3L:4186830-4186950 ( 7) GTGTTGGC 1 chr3R:26099388-26099508 ( 108) GTGCTGGC 1 chr3L:14776109-14776229 ( 6) GTGTGGCC 1 chr3L:8440958-8441078 ( 96) CCGTTGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTGCC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.4635 E= 1.7e+000 -1081 -166 245 -1081 -1081 166 -6 -21 -1081 -1081 253 -1081 -1081 66 -64 93 -1081 -1081 -64 147 -1081 -1081 253 -1081 -1081 215 36 -1081 -1081 251 -1081 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTGCC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.7e+000 0.000000 0.055556 0.944444 0.000000 0.000000 0.555556 0.166667 0.277778 0.000000 0.000000 1.000000 0.000000 0.000000 0.277778 0.111111 0.611111 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.777778 0.222222 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYGTTGCC MEME-1 regular expression -------------------------------------------------------------------------------- G[CT]G[TC]TG[CG]C -------------------------------------------------------------------------------- Time 7.51 secs. ******************************************************************************** ******************************************************************************** MOTIF CARCMCTG MEME-2 width = 8 sites = 15 llr = 156 E-value = 1.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CARCMCTG MEME-2 Description -------------------------------------------------------------------------------- Simplified A :a4:6::: pos.-specific C a:1a4a:: probability G ::5::::a matrix T ::::::a: bits 2.5 * * * * 2.3 * * * * 2.0 * * * * 1.8 * * * * Relative 1.5 ** * *** Entropy 1.3 ** * *** (15.0 bits) 1.0 ** ***** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCACTG consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:10161295-10161415 11 2.97e-06 TTTTGATTAA CAGCCCTG CCTTGCAAAA chr2R:24763025-24763145 104 2.97e-06 AGTACGTCTG CAGCCCTG GTATTTCGT chr2L:13367475-13367595 107 2.97e-06 TTTTATACAC CAGCCCTG GTTTAT chr3L:16582857-16582977 93 2.97e-06 ATAATATTCC CAGCCCTG TGGTAACTTG chrX:20257317-20257437 103 8.58e-06 AATTAAGCGG CAGCACTG ATTAGCTGGC chr2R:17545097-17545217 4 8.58e-06 GTA CAGCACTG CCAGGCGATA chr3R:23760571-23760691 14 8.58e-06 AAAAATTACA CAGCACTG GGCTAGTGCA chr3L:19910241-19910361 53 1.43e-05 GGCGACATGA CAACCCTG ACTTTTATGT chr3L:4186830-4186950 90 2.49e-05 GAATCACTTT CAACACTG GTCAACAGTT chrX:1392932-1393052 32 2.49e-05 TGGCGTTGCC CAACACTG ACCAGCCAGC chr3R:15330601-15330721 99 2.49e-05 TCATATCTGG CAACACTG CAAACTGGCT chr2R:22508152-22508272 87 2.49e-05 TTTTACACTT CAACACTG CAAATGTTTT chr2R:21090960-21091080 53 2.49e-05 GAGCGATTTT CAACACTG CTCTTGGTGT chrX:19348997-19349117 106 2.80e-05 AAAGAGTTTC CACCCCTG AAAGCTG chrX:19643269-19643389 45 3.36e-05 GCATCCCTGC CACCACTG ACAGCTCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10161295-10161415 3e-06 10_[+2]_102 chr2R:24763025-24763145 3e-06 103_[+2]_9 chr2L:13367475-13367595 3e-06 106_[+2]_6 chr3L:16582857-16582977 3e-06 92_[+2]_20 chrX:20257317-20257437 8.6e-06 102_[+2]_10 chr2R:17545097-17545217 8.6e-06 3_[+2]_109 chr3R:23760571-23760691 8.6e-06 13_[+2]_99 chr3L:19910241-19910361 1.4e-05 52_[+2]_60 chr3L:4186830-4186950 2.5e-05 89_[+2]_23 chrX:1392932-1393052 2.5e-05 31_[+2]_81 chr3R:15330601-15330721 2.5e-05 98_[+2]_14 chr2R:22508152-22508272 2.5e-05 86_[+2]_26 chr2R:21090960-21091080 2.5e-05 52_[+2]_60 chrX:19348997-19349117 2.8e-05 105_[+2]_7 chrX:19643269-19643389 3.4e-05 44_[+2]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CARCMCTG width=8 seqs=15 chr3R:10161295-10161415 ( 11) CAGCCCTG 1 chr2R:24763025-24763145 ( 104) CAGCCCTG 1 chr2L:13367475-13367595 ( 107) CAGCCCTG 1 chr3L:16582857-16582977 ( 93) CAGCCCTG 1 chrX:20257317-20257437 ( 103) CAGCACTG 1 chr2R:17545097-17545217 ( 4) CAGCACTG 1 chr3R:23760571-23760691 ( 14) CAGCACTG 1 chr3L:19910241-19910361 ( 53) CAACCCTG 1 chr3L:4186830-4186950 ( 90) CAACACTG 1 chrX:1392932-1393052 ( 32) CAACACTG 1 chr3R:15330601-15330721 ( 99) CAACACTG 1 chr2R:22508152-22508272 ( 87) CAACACTG 1 chr2R:21090960-21091080 ( 53) CAACACTG 1 chrX:19348997-19349117 ( 106) CACCCCTG 1 chrX:19643269-19643389 ( 45) CACCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.8033 E= 1.7e+001 -1055 251 -1055 -1055 160 -1055 -1055 -1055 28 -40 143 -1055 -1055 251 -1055 -1055 86 119 -1055 -1055 -1055 251 -1055 -1055 -1055 -1055 -1055 164 -1055 -1055 253 -1055 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 15 E= 1.7e+001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.400000 0.133333 0.466667 0.000000 0.000000 1.000000 0.000000 0.000000 0.600000 0.400000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CARCMCTG MEME-2 regular expression -------------------------------------------------------------------------------- CA[GA]C[AC]CTG -------------------------------------------------------------------------------- Time 13.79 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGTY MEME-3 width = 8 sites = 18 llr = 181 E-value = 8.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGTY MEME-3 Description -------------------------------------------------------------------------------- Simplified A :a::::1: pos.-specific C a::a::24 probability G ::a::a11 matrix T ::::a:66 bits 2.5 * ** * 2.3 * ** * 2.0 * ** * 1.8 * ** * Relative 1.5 ****** Entropy 1.3 ****** (14.5 bits) 1.0 ****** 0.8 ****** * 0.5 ******** 0.3 ******** 0.0 -------- Multilevel CAGCTGTT consensus CC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTY MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6339626-6339746 13 5.45e-06 CCGCTGAGAA CAGCTGTC GACTGTCTGC chr3R:23760571-23760691 34 5.45e-06 CTAGTGCAGT CAGCTGTC ATCGATTTGT chr2L:4403148-4403268 68 5.45e-06 TTTCCGCTGA CAGCTGTC ATCGATATGT chr3L:9838657-9838777 3 5.45e-06 AT CAGCTGTC TCCCGATAAC chr3R:9038827-9038947 79 1.55e-05 TAAGGGGGAT CAGCTGTT TGCCAACATG chr2L:12056190-12056310 101 1.55e-05 GAAACGCGCT CAGCTGTT GCACACATCA chr2R:14575973-14576093 7 1.55e-05 TATGTA CAGCTGTT TGTGCCGCTG chr2R:22562075-22562195 79 1.55e-05 AGCAGTGGAT CAGCTGTT GCTCACAAGC chr2R:12198824-12198944 46 1.55e-05 TCAGTGTTAC CAGCTGTT GTGCTGAACA chr3R:7913274-7913394 13 1.55e-05 TAAAGCGAAT CAGCTGTT GCCTTCGGGC chr3R:30015311-30015431 68 1.84e-05 CAAAAACTAC CAGCTGCC TGTGTTGAGC chr2L:8894290-8894410 109 1.84e-05 ATTTGTTTGA CAGCTGCC TGCA chr2R:24763025-24763145 41 2.39e-05 GACAACTGAA CAGCTGCT TCAGATTACG chr2R:17564745-17564865 87 2.39e-05 TATCATCGCA CAGCTGCT AATTCGACGT chr2R:21060540-21060660 10 3.22e-05 TAGCGATGA CAGCTGGT CGATATCGTT chr2L:5972182-5972302 111 3.22e-05 CGAGGGTATG CAGCTGGT CG chr2L:21149212-21149332 53 3.76e-05 ttcttatcta cagctgtg ttcataaaaa chr2L:8488885-8489005 90 4.62e-05 TGCAAACAAA CAGCTGAC AGTATTTGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTY MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6339626-6339746 5.5e-06 12_[+3]_100 chr3R:23760571-23760691 5.5e-06 33_[+3]_79 chr2L:4403148-4403268 5.5e-06 67_[+3]_45 chr3L:9838657-9838777 5.5e-06 2_[+3]_110 chr3R:9038827-9038947 1.5e-05 78_[+3]_34 chr2L:12056190-12056310 1.5e-05 100_[+3]_12 chr2R:14575973-14576093 1.5e-05 6_[+3]_106 chr2R:22562075-22562195 1.5e-05 78_[+3]_34 chr2R:12198824-12198944 1.5e-05 45_[+3]_67 chr3R:7913274-7913394 1.5e-05 12_[+3]_100 chr3R:30015311-30015431 1.8e-05 67_[+3]_45 chr2L:8894290-8894410 1.8e-05 108_[+3]_4 chr2R:24763025-24763145 2.4e-05 40_[+3]_72 chr2R:17564745-17564865 2.4e-05 86_[+3]_26 chr2R:21060540-21060660 3.2e-05 9_[+3]_103 chr2L:5972182-5972302 3.2e-05 110_[+3]_2 chr2L:21149212-21149332 3.8e-05 52_[+3]_60 chr2L:8488885-8489005 4.6e-05 89_[+3]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTY MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGTY width=8 seqs=18 chr2L:6339626-6339746 ( 13) CAGCTGTC 1 chr3R:23760571-23760691 ( 34) CAGCTGTC 1 chr2L:4403148-4403268 ( 68) CAGCTGTC 1 chr3L:9838657-9838777 ( 3) CAGCTGTC 1 chr3R:9038827-9038947 ( 79) CAGCTGTT 1 chr2L:12056190-12056310 ( 101) CAGCTGTT 1 chr2R:14575973-14576093 ( 7) CAGCTGTT 1 chr2R:22562075-22562195 ( 79) CAGCTGTT 1 chr2R:12198824-12198944 ( 46) CAGCTGTT 1 chr3R:7913274-7913394 ( 13) CAGCTGTT 1 chr3R:30015311-30015431 ( 68) CAGCTGCC 1 chr2L:8894290-8894410 ( 109) CAGCTGCC 1 chr2R:24763025-24763145 ( 41) CAGCTGCT 1 chr2R:17564745-17564865 ( 87) CAGCTGCT 1 chr2R:21060540-21060660 ( 10) CAGCTGGT 1 chr2L:5972182-5972302 ( 111) CAGCTGGT 1 chr2L:21149212-21149332 ( 53) CAGCTGTG 1 chr2L:8488885-8489005 ( 90) CAGCTGAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTY MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7495 E= 8.1e-001 -1081 251 -1081 -1081 160 -1081 -1081 -1081 -1081 -1081 253 -1081 -1081 251 -1081 -1081 -1081 -1081 -1081 164 -1081 -1081 253 -1081 -257 34 -64 93 -1081 115 -164 79 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTY MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 8.1e-001 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.055556 0.222222 0.111111 0.611111 0.000000 0.388889 0.055556 0.555556 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGTY MEME-3 regular expression -------------------------------------------------------------------------------- CAGCTG[TC][TC] -------------------------------------------------------------------------------- Time 20.05 secs. ******************************************************************************** ******************************************************************************** MOTIF GSCGSCRA MEME-4 width = 8 sites = 12 llr = 125 E-value = 3.7e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GSCGSCRA MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::::::79 pos.-specific C 13a:5a:: probability G 97:a5:31 matrix T :::::::: bits 2.5 ** * 2.3 ** * 2.0 * ** * 1.8 * ** * Relative 1.5 ****** Entropy 1.3 ****** * (15.0 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGCCAA consensus C G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGSCRA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:14625635-14625755 32 9.16e-06 GTCGCAACGG GGCGGCGA TAGCGATGGC chrX:1392932-1393052 8 9.16e-06 TTCATTT GGCGCCAA ACGAATTGGC chr3L:11708606-11708726 5 9.16e-06 TGGT GGCGCCAA AATATACCAC chr2L:18136702-18136822 13 9.16e-06 CGACAAAAGC GGCGGCAA ATATTCGTTT chrX:18366661-18366781 37 9.16e-06 GAAAAACAAA GGCGGCAA CAAGAACAAC chr2R:23551174-23551294 65 9.16e-06 TTTAAACAAA GGCGCCGA GGACCAGAAC chr3L:1295748-1295868 99 1.84e-05 GCTACTTAAA GCCGGCGA ACCAGCTCAT chr2L:203662-203782 75 1.84e-05 GGCAACGCTA GCCGGCGA AATATCGATG chr2L:13082323-13082443 81 1.84e-05 TGCAAACAAA GCCGCCAA AGCATATGGA chr2R:16856725-16856845 10 1.84e-05 ATCGTATTG GCCGCCAA AAAATTAGCA chr3L:15825496-15825616 21 2.32e-05 aggcagagac ggcggcag aggcagaggc chr3R:30802298-30802418 80 3.25e-05 CTCGGCCCCA CGCGCCAA ATCCGAGTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGSCRA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:14625635-14625755 9.2e-06 31_[+4]_81 chrX:1392932-1393052 9.2e-06 7_[+4]_105 chr3L:11708606-11708726 9.2e-06 4_[+4]_108 chr2L:18136702-18136822 9.2e-06 12_[+4]_100 chrX:18366661-18366781 9.2e-06 36_[+4]_76 chr2R:23551174-23551294 9.2e-06 64_[+4]_48 chr3L:1295748-1295868 1.8e-05 98_[+4]_14 chr2L:203662-203782 1.8e-05 74_[+4]_38 chr2L:13082323-13082443 1.8e-05 80_[+4]_32 chr2R:16856725-16856845 1.8e-05 9_[+4]_103 chr3L:15825496-15825616 2.3e-05 20_[+4]_92 chr3R:30802298-30802418 3.2e-05 79_[+4]_33 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGSCRA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GSCGSCRA width=8 seqs=12 chr3R:14625635-14625755 ( 32) GGCGGCGA 1 chrX:1392932-1393052 ( 8) GGCGCCAA 1 chr3L:11708606-11708726 ( 5) GGCGCCAA 1 chr2L:18136702-18136822 ( 13) GGCGGCAA 1 chrX:18366661-18366781 ( 37) GGCGGCAA 1 chr2R:23551174-23551294 ( 65) GGCGCCGA 1 chr3L:1295748-1295868 ( 99) GCCGGCGA 1 chr2L:203662-203782 ( 75) GCCGGCGA 1 chr2L:13082323-13082443 ( 81) GCCGCCAA 1 chr2R:16856725-16856845 ( 10) GCCGCCAA 1 chr3L:15825496-15825616 ( 21) GGCGGCAG 1 chr3R:30802298-30802418 ( 80) CGCGCCAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGSCRA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 3.7e+003 -1023 -107 240 -1023 -1023 93 194 -1023 -1023 251 -1023 -1023 -1023 -1023 253 -1023 -1023 151 153 -1023 -1023 251 -1023 -1023 101 -1023 94 -1023 147 -1023 -105 -1023 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGSCRA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 3.7e+003 0.000000 0.083333 0.916667 0.000000 0.000000 0.333333 0.666667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.500000 0.500000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.000000 0.333333 0.000000 0.916667 0.000000 0.083333 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GSCGSCRA MEME-4 regular expression -------------------------------------------------------------------------------- G[GC]CG[CG]C[AG]A -------------------------------------------------------------------------------- Time 26.27 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGTGGG MEME-5 width = 8 sites = 2 llr = 26 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGTGGG MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G a:aa:aaa matrix T :a::a::: bits 2.5 * ** *** 2.3 * ** *** 2.0 * ** *** 1.8 * ** *** Relative 1.5 ******** Entropy 1.3 ******** (18.5 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GTGGTGGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:9038827-9038947 108 2.76e-06 GAGTGTGTGG GTGGTGGG AAGGT chr3L:13015315-13015435 21 2.76e-06 ATCAGATTTA GTGGTGGG AGTGTCAGCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:9038827-9038947 2.8e-06 107_[+5]_5 chr3L:13015315-13015435 2.8e-06 20_[+5]_92 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGTGGG width=8 seqs=2 chr3R:9038827-9038947 ( 108) GTGGTGGG 1 chr3L:13015315-13015435 ( 21) GTGGTGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.2e+004 -765 -765 252 -765 -765 -765 -765 163 -765 -765 252 -765 -765 -765 252 -765 -765 -765 -765 163 -765 -765 252 -765 -765 -765 252 -765 -765 -765 252 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGTGGG MEME-5 regular expression -------------------------------------------------------------------------------- GTGGTGGG -------------------------------------------------------------------------------- Time 32.45 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:10688931-10689051 5.71e-01 120 chr2L:16251975-16252095 5.54e-01 120 chrX:4762449-4762569 5.41e-01 120 chr3L:19929475-19929595 7.35e-01 120 chr2R:22661342-22661462 4.48e-01 120 chr3L:16582857-16582977 2.03e-02 92_[+2(2.97e-06)]_20 chr2R:23551174-23551294 5.72e-02 64_[+4(9.16e-06)]_48 chr4:557995-558115 7.27e-01 120 chrX:18407490-18407610 9.94e-01 120 chr3R:7913274-7913394 2.62e-04 12_[+3(1.55e-05)]_6_[+1(1.84e-05)]_\ 86 chr2R:18603915-18604035 1.00e+00 120 chrX:18366661-18366781 2.09e-02 7_[+4(9.16e-06)]_21_[+4(9.16e-06)]_\ 76 chr3L:12350451-12350571 2.59e-02 120 chr2R:12537652-12537772 8.26e-01 120 chr3L:7243893-7244013 1.92e-03 100_[+1(2.86e-06)]_12 chr2R:12198824-12198944 3.27e-03 45_[+3(1.55e-05)]_67 chr3R:26099388-26099508 1.12e-03 107_[+1(4.73e-05)]_5 chrX:8493611-8493731 7.69e-01 120 chr2R:21090960-21091080 5.92e-03 52_[+2(2.49e-05)]_60 chr2L:14499234-14499354 8.40e-01 120 chrX:4590686-4590806 5.04e-01 120 chr3L:1609674-1609794 8.47e-01 120 chr3R:31603817-31603937 6.13e-01 120 chr2L:1650160-1650280 5.15e-01 120 chr2R:12173431-12173551 8.93e-01 120 chr2L:12063256-12063376 9.91e-01 120 chr3R:7500682-7500802 6.50e-01 120 chr3R:15347903-15348023 8.70e-01 120 chrX:17330429-17330549 9.73e-01 120 chr2R:25183128-25183248 9.68e-02 120 chr3R:28545057-28545177 6.10e-02 120 chr2R:17140294-17140414 4.69e-01 120 chr3R:7092103-7092223 7.46e-02 120 chr3L:9838657-9838777 7.48e-03 2_[+3(5.45e-06)]_110 chrX:19146499-19146619 8.06e-01 120 chr3L:7013593-7013713 9.19e-01 120 chr3R:30200133-30200253 6.68e-01 120 chr2L:18625156-18625276 8.44e-01 120 chrX:6663311-6663431 8.66e-01 120 chrX:9120970-9121090 4.29e-01 120 chr3L:16160185-16160305 9.75e-01 120 chrX:3745316-3745436 9.81e-01 120 chrX:13817582-13817702 3.72e-01 120 chr2L:11221608-11221728 3.37e-01 120 chr2R:7510214-7510334 7.26e-01 120 chr2R:13909045-13909165 3.51e-01 120 chr2L:2992849-2992969 7.90e-01 120 chr2R:9950351-9950471 6.15e-01 120 chr3L:20432444-20432564 3.76e-01 120 chr2L:20390119-20390239 4.80e-01 120 chr2L:9614106-9614226 5.39e-01 120 chrX:3403576-3403696 9.72e-01 120 chr2L:13512282-13512402 8.16e-01 120 chr2L:8461898-8462018 6.03e-01 120 chr2R:18273413-18273533 9.41e-01 120 chr2R:23615212-23615332 8.70e-01 120 chrX:19348997-19349117 8.86e-02 105_[+2(2.80e-05)]_7 chr3L:3760771-3760891 5.61e-01 120 chr2R:22562075-22562195 2.58e-06 14_[+1(1.84e-05)]_56_[+3(1.55e-05)]_\ 34 chr2L:1628276-1628396 1.00e+00 120 chr3R:18585696-18585816 3.28e-02 36_[+5(9.36e-05)]_76 chr3L:639841-639961 2.79e-01 120 chr3R:21161847-21161967 4.20e-03 81_[+5(1.44e-05)]_31 chr3R:14741501-14741621 1.69e-01 120 chrX:14169198-14169318 9.97e-01 120 chr3L:3224828-3224948 6.81e-01 120 chr3R:8930329-8930449 2.30e-01 120 chr2R:17698945-17699065 6.49e-01 120 chr2L:3477387-3477507 9.54e-01 120 chr3R:8801379-8801499 9.62e-01 120 chr2L:4403148-4403268 7.68e-03 67_[+3(5.45e-06)]_45 chr3L:17007134-17007254 1.44e-01 120 chr2L:13367475-13367595 9.28e-03 106_[+2(2.97e-06)]_6 chr3R:4775456-4775576 3.84e-01 120 chr2L:18136702-18136822 2.72e-03 12_[+4(9.16e-06)]_100 chr3L:3544400-3544520 6.55e-01 120 chr3L:15825496-15825616 1.86e-03 20_[+4(2.32e-05)]_39_[+5(9.36e-05)]_\ 45 chr2L:11199227-11199347 9.72e-01 120 chr3R:8256205-8256325 9.76e-01 120 chr3R:24580607-24580727 9.62e-01 120 chr2R:16856725-16856845 1.02e-02 9_[+4(1.84e-05)]_103 chr2R:13261890-13262010 7.74e-01 120 chr3R:9430445-9430565 8.89e-01 120 chr2R:14575973-14576093 1.75e-02 6_[+3(1.55e-05)]_106 chr3R:6170873-6170993 9.12e-02 120 chr3R:30802298-30802418 2.76e-04 79_[+4(3.25e-05)]_20_[+2(5.98e-05)]_\ 5 chr3R:16264022-16264142 4.26e-05 56_[+1(4.42e-06)]_56 chr3L:9691299-9691419 9.87e-01 120 chr2L:10698149-10698269 9.90e-01 120 chr3L:3933017-3933137 9.22e-02 120 chr3L:12803800-12803920 9.52e-01 120 chr3L:8720191-8720311 2.68e-01 120 chr3R:19875674-19875794 1.69e-02 120 chr3R:16704369-16704489 4.34e-01 120 chr3L:8440958-8441078 1.20e-02 95_[+1(5.38e-05)]_17 chr2L:21149212-21149332 1.17e-02 52_[+3(3.76e-05)]_60 chrX:11325301-11325421 2.14e-01 120 chr3L:15967975-15968095 9.45e-01 120 chr2L:6717538-6717658 6.05e-01 120 chr3L:19016670-19016790 8.73e-01 120 chr2R:24139274-24139394 8.22e-01 120 chr3L:11785395-11785515 3.57e-01 120 chr3R:12985911-12986031 6.67e-01 120 chr3R:5103839-5103959 9.18e-01 120 chr3L:3770982-3771102 4.79e-01 120 chr3L:19909356-19909476 8.87e-03 120 chr3L:7861166-7861286 7.75e-01 120 chr2L:7204279-7204399 6.24e-01 120 chr3L:16149935-16150055 8.90e-01 120 chr3R:30134776-30134896 9.44e-01 120 chr3L:9358792-9358912 6.85e-01 120 chr2R:21663157-21663277 2.72e-02 120 chrX:5897127-5897247 4.48e-02 120 chrX:13376650-13376770 7.38e-01 120 chr2R:22508152-22508272 1.69e-01 86_[+2(2.49e-05)]_26 chr2R:17514133-17514253 7.93e-03 11_[+1(2.86e-06)]_101 chr3L:21011402-21011522 9.71e-01 120 chr2R:9444492-9444612 9.06e-01 120 chr3R:24518138-24518258 1.50e-01 120 chr3R:26104481-26104601 9.83e-01 120 chr2L:9775293-9775413 1.93e-01 120 chr2L:6622776-6622896 1.18e-01 120 chr2L:5972182-5972302 9.31e-03 110_[+3(3.22e-05)]_2 chr2R:22062501-22062621 7.56e-01 120 chr3L:4522025-4522145 1.76e-01 120 chr2R:24893752-24893872 9.83e-01 120 chr2R:24571691-24571811 1.00e+00 120 chr3L:13015315-13015435 1.59e-03 20_[+5(2.76e-06)]_92 chr3R:28327358-28327478 9.14e-01 120 chr3L:14776109-14776229 2.98e-03 5_[+1(5.38e-05)]_107 chr3L:5926108-5926228 9.97e-01 120 chr3L:19897253-19897373 5.67e-01 120 chr2L:12056190-12056310 2.05e-03 53_[+4(4.67e-05)]_39_[+3(1.55e-05)]_\ 12 chr2R:12772777-12772897 9.58e-01 120 chr2R:20319523-20319643 1.73e-01 120 chr2L:13082323-13082443 2.18e-04 80_[+4(1.84e-05)]_32 chrX:16834295-16834415 9.67e-01 120 chr3L:16571563-16571683 5.80e-01 120 chr3L:94225-94345 2.61e-01 120 chr2R:17564745-17564865 7.39e-03 86_[+3(2.39e-05)]_26 chr2L:14377049-14377169 4.79e-01 120 chr3R:9370523-9370643 8.71e-01 120 chr3L:3450538-3450658 9.03e-01 120 chr3R:30304993-30305113 1.00e+00 120 chr2L:8894290-8894410 2.68e-02 108_[+3(1.84e-05)]_4 chr2L:15254412-15254532 9.78e-01 120 chr3R:13030715-13030835 5.31e-01 120 chr3R:9494444-9494564 4.56e-01 120 chr3L:4353903-4354023 1.21e-01 120 chr2L:18688787-18688907 4.65e-03 21_[+1(2.86e-06)]_91 chr2R:16170818-16170938 3.22e-01 120 chr3L:11708606-11708726 2.87e-04 4_[+4(9.16e-06)]_38_[+1(2.43e-05)]_\ 62 chr3R:15330601-15330721 1.47e-01 98_[+2(2.49e-05)]_14 chr3L:4379054-4379174 5.62e-01 120 chr2L:7702459-7702579 9.83e-01 120 chr3L:699276-699396 3.33e-02 120 chr2L:19490252-19490372 9.13e-01 120 chr2L:19140904-19141024 2.57e-03 55_[+5(1.44e-05)]_57 chr3R:31793786-31793906 9.90e-01 120 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chr3L:18672304-18672424 5.72e-01 120 chr3L:11303987-11304107 8.40e-01 120 chr2L:13219823-13219943 6.56e-01 120 chr2L:8350632-8350752 7.09e-03 33_[+1(3.10e-05)]_79 chr2L:3173022-3173142 6.26e-03 120 chr3R:23760571-23760691 1.65e-04 13_[+2(8.58e-06)]_12_[+3(5.45e-06)]_\ 79 chr2L:8554335-8554455 2.86e-01 120 chr2L:18328826-18328946 3.79e-02 94_[+4(9.64e-05)]_18 chr3L:9847550-9847670 9.03e-01 120 chr2R:6741937-6742057 1.51e-01 120 chr2L:8602806-8602926 3.47e-01 120 chr2R:9971174-9971294 1.72e-01 120 chr2R:17161041-17161161 2.01e-01 120 chr2R:14362979-14363099 2.19e-01 120 chrX:8574806-8574926 6.37e-01 120 chr2L:20807706-20807826 1.66e-02 120 chr2L:4971621-4971741 7.19e-01 120 chr2L:203662-203782 2.33e-03 74_[+4(1.84e-05)]_38 chr3L:16165782-16165902 8.15e-01 120 chr3R:8563958-8564078 9.21e-01 120 chr3L:19586161-19586281 6.96e-02 120 chr2L:7957083-7957203 9.70e-01 120 chr2L:21156243-21156363 5.03e-02 120 chr3L:1295748-1295868 1.06e-02 84_[+4(6.55e-05)]_6_[+4(1.84e-05)]_\ 14 chr2L:12542083-12542203 9.85e-01 120 chr2R:17848881-17849001 9.97e-01 120 chr3L:20395356-20395476 7.66e-01 120 chr3R:6007539-6007659 9.16e-02 120 chr2R:23868635-23868755 8.33e-01 120 chr3R:30015311-30015431 7.98e-03 67_[+3(1.84e-05)]_45 chr2L:10516919-10517039 4.29e-01 120 chr3R:9038827-9038947 9.16e-05 78_[+3(1.55e-05)]_21_[+5(2.76e-06)]_\ 5 chr4:226001-226121 2.90e-02 61_[+1(7.76e-05)]_51 chr2R:18775075-18775195 4.10e-01 120 chr3R:29039762-29039882 5.86e-01 120 chrX:19643269-19643389 1.27e-04 35_[+2(4.75e-05)]_1_[+2(3.36e-05)]_\ 68 chr3R:30195749-30195869 3.52e-02 120 chrX:487587-487707 1.51e-01 120 chr3L:7435062-7435182 4.79e-01 120 chr3R:21112474-21112594 7.13e-01 120 chr2L:6339626-6339746 7.02e-03 12_[+3(5.45e-06)]_100 chr3L:3305509-3305629 1.34e-02 120 chr3L:21034414-21034534 9.34e-03 101_[+1(8.79e-06)]_11 chr2L:8488885-8489005 6.47e-03 89_[+3(4.62e-05)]_23 chr2L:10760780-10760900 3.01e-01 94_[+1(7.76e-05)]_18 chr2L:3629639-3629759 1.69e-01 120 chr3R:15792556-15792676 5.40e-01 120 chr2R:11809486-11809606 8.40e-01 120 chrX:3431821-3431941 1.00e+00 120 chr3L:12336398-12336518 9.50e-04 33_[+1(2.86e-06)]_79 chr3R:6406640-6406760 8.94e-01 120 chr3R:17680884-17681004 2.75e-01 120 chr3R:23028635-23028755 4.03e-01 120 chrX:11854908-11855028 2.68e-01 120 chr2L:11829374-11829494 1.33e-03 64_[+1(2.43e-05)]_48 chr2R:21060540-21060660 8.77e-02 9_[+3(3.22e-05)]_103 chr3L:16385935-16386055 5.50e-02 120 chr3R:26888454-26888574 4.30e-01 120 chr3L:17912727-17912847 5.55e-01 120 chr2R:17545097-17545217 1.05e-04 3_[+2(8.58e-06)]_109 chr3L:5789850-5789970 8.30e-01 120 chr3L:3197630-3197750 9.15e-01 120 chr3L:9899227-9899347 3.94e-02 18_[+1(3.10e-05)]_94 chrX:17696743-17696863 7.76e-01 120 chrX:20257317-20257437 2.98e-03 102_[+2(8.58e-06)]_10 chr3R:14625635-14625755 8.32e-04 31_[+4(9.16e-06)]_81 chr3L:4186830-4186950 4.21e-05 6_[+1(4.06e-05)]_42_[+1(8.45e-05)]_\ 25_[+2(2.49e-05)]_23 chr2L:4394014-4394134 9.51e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************