******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/BtbVII.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3R:23121050-23121170 1.0000 120 chr2L:20720255-20720375 1.0000 120 chr2R:9464013-9464133 1.0000 120 chr2L:8116922-8117042 1.0000 120 chr2R:21255624-21255744 1.0000 120 chrX:19746439-19746559 1.0000 120 chrX:14929848-14929968 1.0000 120 chr3L:311702-311822 1.0000 120 chr2R:7639394-7639514 1.0000 120 chr3R:20985632-20985752 1.0000 120 chr2L:19548346-19548466 1.0000 120 chr3R:19632699-19632819 1.0000 120 chr2L:16801679-16801799 1.0000 120 chr3L:4550417-4550537 1.0000 120 chr3R:10884486-10884606 1.0000 120 chr2L:20341673-20341793 1.0000 120 chr2L:20706031-20706151 1.0000 120 chrX:13890483-13890603 1.0000 120 chr3R:11243474-11243594 1.0000 120 chr2L:20704997-20705117 1.0000 120 chr2R:6758882-6759002 1.0000 120 chr3R:23178205-23178325 1.0000 120 chr3R:8357669-8357789 1.0000 120 chrX:9868859-9868979 1.0000 120 chrX:9581896-9582016 1.0000 120 chr3L:3431197-3431317 1.0000 120 chr2R:15569219-15569339 1.0000 120 chr3L:5329805-5329925 1.0000 120 chr3R:25544055-25544175 1.0000 120 chr3L:17958421-17958541 1.0000 120 chr2R:7727646-7727766 1.0000 120 chr2L:10144623-10144743 1.0000 120 chr3R:11669649-11669769 1.0000 120 chr2L:85210-85330 1.0000 120 chr2R:12679687-12679807 1.0000 120 chr2L:14230552-14230672 1.0000 120 chr2R:22293508-22293628 1.0000 120 chr2L:4614496-4614616 1.0000 120 chr3R:11353439-11353559 1.0000 120 chr2L:1201505-1201625 1.0000 120 chr2L:3114246-3114366 1.0000 120 chr3R:25306062-25306182 1.0000 120 chrX:9355511-9355631 1.0000 120 chr2R:14577025-14577145 1.0000 120 chr2R:6812386-6812506 1.0000 120 chr2R:21082676-21082796 1.0000 120 chr3R:24320153-24320273 1.0000 120 chr2R:7014434-7014554 1.0000 120 chr3R:15198461-15198581 1.0000 120 chr2L:20714697-20714817 1.0000 120 chr3R:10884695-10884815 1.0000 120 chr2R:14042640-14042760 1.0000 120 chr2R:14186655-14186775 1.0000 120 chr2R:24515008-24515128 1.0000 120 chr3L:11005147-11005267 1.0000 120 chr3L:1738774-1738894 1.0000 120 chr2L:19819979-19820099 1.0000 120 chr2R:19416412-19416532 1.0000 120 chr3L:247712-247832 1.0000 120 chr3R:12716430-12716550 1.0000 120 chr3R:11648994-11649114 1.0000 120 chr3R:22057197-22057317 1.0000 120 chr3R:16213980-16214100 1.0000 120 chr2R:19169944-19170064 1.0000 120 chr2L:2228403-2228523 1.0000 120 chr3R:24073888-24074008 1.0000 120 chr3R:15402761-15402881 1.0000 120 chr2L:17448533-17448653 1.0000 120 chr3R:24102492-24102612 1.0000 120 chr2L:1619298-1619418 1.0000 120 chr3L:21010242-21010362 1.0000 120 chr2R:23605297-23605417 1.0000 120 chr3L:9402054-9402174 1.0000 120 chrX:19281419-19281539 1.0000 120 chr2L:10499766-10499886 1.0000 120 chr3L:18846180-18846300 1.0000 120 chr2R:16139961-16140081 1.0000 120 chr2R:23869532-23869652 1.0000 120 chrX:13322566-13322686 1.0000 120 chrX:18125665-18125785 1.0000 120 chr2L:18625165-18625285 1.0000 120 chr2L:18549632-18549752 1.0000 120 chr3L:15742043-15742163 1.0000 120 chrX:11339297-11339417 1.0000 120 chr3R:22636396-22636516 1.0000 120 chr3L:17671904-17672024 1.0000 120 chr3R:9883698-9883818 1.0000 120 chr3L:123965-124085 1.0000 120 chr2R:15249503-15249623 1.0000 120 chr3R:29866889-29867009 1.0000 120 chr3L:17539032-17539152 1.0000 120 chr2R:11394524-11394644 1.0000 120 chr2L:12494027-12494147 1.0000 120 chr3L:1967710-1967830 1.0000 120 chr3L:3149177-3149297 1.0000 120 chr3L:16002605-16002725 1.0000 120 chr3R:21158830-21158950 1.0000 120 chr3R:26185375-26185495 1.0000 120 chr3R:20837367-20837487 1.0000 120 chr3L:7376923-7377043 1.0000 120 chr3R:16982387-16982507 1.0000 120 chr2R:13438168-13438288 1.0000 120 chrX:11813002-11813122 1.0000 120 chr2L:20858902-20859022 1.0000 120 chr3L:12834425-12834545 1.0000 120 chr2R:10395788-10395908 1.0000 120 chr3L:9760274-9760394 1.0000 120 chr2R:8651815-8651935 1.0000 120 chr2R:9387175-9387295 1.0000 120 chr3R:16305674-16305794 1.0000 120 chr2R:7749791-7749911 1.0000 120 chr2R:7886008-7886128 1.0000 120 chr3R:21434178-21434298 1.0000 120 chr2R:6881209-6881329 1.0000 120 chr3R:10054384-10054504 1.0000 120 chr3L:9355835-9355955 1.0000 120 chr3L:14992887-14993007 1.0000 120 chr2L:9509745-9509865 1.0000 120 chr2L:552615-552735 1.0000 120 chr3R:24319935-24320055 1.0000 120 chr3L:12834625-12834745 1.0000 120 chr3L:4103953-4104073 1.0000 120 chr3R:23110801-23110921 1.0000 120 chr2R:22508188-22508308 1.0000 120 chr2L:12700744-12700864 1.0000 120 chr3L:4025933-4026053 1.0000 120 chr3R:9390350-9390470 1.0000 120 chr2R:18810684-18810804 1.0000 120 chr3L:3149382-3149502 1.0000 120 chr2R:22387317-22387437 1.0000 120 chr3R:23284416-23284536 1.0000 120 chr2R:7049614-7049734 1.0000 120 chr2L:20808383-20808503 1.0000 120 chr3L:7836830-7836950 1.0000 120 chr3L:11450686-11450806 1.0000 120 chr3R:29621005-29621125 1.0000 120 chr3L:16840581-16840701 1.0000 120 chr2R:17918839-17918959 1.0000 120 chr3L:3134273-3134393 1.0000 120 chr3L:3691741-3691861 1.0000 120 chr3L:17049674-17049794 1.0000 120 chr3L:1568451-1568571 1.0000 120 chr3R:18296278-18296398 1.0000 120 chr3R:6433382-6433502 1.0000 120 chr3R:17966154-17966274 1.0000 120 chr2L:3369263-3369383 1.0000 120 chr3R:11968568-11968688 1.0000 120 chr3R:7129515-7129635 1.0000 120 chr3L:13912948-13913068 1.0000 120 chr2R:22116295-22116415 1.0000 120 chr3L:17008731-17008851 1.0000 120 chr3R:13976163-13976283 1.0000 120 chr2L:18717493-18717613 1.0000 120 chr2R:9819931-9820051 1.0000 120 chr2R:17020107-17020227 1.0000 120 chr3R:13441804-13441924 1.0000 120 chrX:3282081-3282201 1.0000 120 chr2R:16225445-16225565 1.0000 120 chr3R:4359760-4359880 1.0000 120 chr3L:3755784-3755904 1.0000 120 chr3R:27605890-27606010 1.0000 120 chr3L:698766-698886 1.0000 120 chr3R:15129022-15129142 1.0000 120 chr3L:22838136-22838256 1.0000 120 chr2R:18435148-18435268 1.0000 120 chr3R:13383003-13383123 1.0000 120 chrX:13320765-13320885 1.0000 120 chr3L:300170-300290 1.0000 120 chr3L:606771-606891 1.0000 120 chr2R:5992810-5992930 1.0000 120 chr2R:15813461-15813581 1.0000 120 chr2L:18965681-18965801 1.0000 120 chr2L:7628489-7628609 1.0000 120 chr2L:11271997-11272117 1.0000 120 chr3R:29651591-29651711 1.0000 120 chr3L:17791645-17791765 1.0000 120 chr3L:17808946-17809066 1.0000 120 chr2R:21646664-21646784 1.0000 120 chr2L:9908595-9908715 1.0000 120 chr3R:14285190-14285310 1.0000 120 chr3R:25740564-25740684 1.0000 120 chr3L:626682-626802 1.0000 120 chrX:18243750-18243870 1.0000 120 chr3L:19847114-19847234 1.0000 120 chr3L:20198159-20198279 1.0000 120 chr2L:13158062-13158182 1.0000 120 chr2L:8740165-8740285 1.0000 120 chr3L:639634-639754 1.0000 120 chr3R:12657121-12657241 1.0000 120 chr3L:16356307-16356427 1.0000 120 chr3L:1189327-1189447 1.0000 120 chr3L:11528462-11528582 1.0000 120 chrX:10784319-10784439 1.0000 120 chr2R:21549103-21549223 1.0000 120 chr3L:16356523-16356643 1.0000 120 chr3L:15549025-15549145 1.0000 120 chr3L:17531538-17531658 1.0000 120 chr3L:16958791-16958911 1.0000 120 chr2R:25076866-25076986 1.0000 120 chr2R:25012076-25012196 1.0000 120 chrX:11885460-11885580 1.0000 120 chr2R:13909073-13909193 1.0000 120 chr3R:21637107-21637227 1.0000 120 chr2R:12035190-12035310 1.0000 120 chr3L:8060653-8060773 1.0000 120 chr2R:14908358-14908478 1.0000 120 chr2R:15846374-15846494 1.0000 120 chr2L:10231230-10231350 1.0000 120 chrX:8115944-8116064 1.0000 120 chr2L:8031574-8031694 1.0000 120 chr3L:17003661-17003781 1.0000 120 chr2L:1723165-1723285 1.0000 120 chr2R:9060088-9060208 1.0000 120 chr3L:12835684-12835804 1.0000 120 chr2R:15515725-15515845 1.0000 120 chr2L:20793956-20794076 1.0000 120 chr3L:1609753-1609873 1.0000 120 chrX:16573773-16573893 1.0000 120 chrX:13817588-13817708 1.0000 120 chr3L:17113406-17113526 1.0000 120 chr2L:3121767-3121887 1.0000 120 chr2L:10321766-10321886 1.0000 120 chr3L:17310585-17310705 1.0000 120 chr3L:4603528-4603648 1.0000 120 chr3R:21176717-21176837 1.0000 120 chr3L:548937-549057 1.0000 120 chr2R:14140781-14140901 1.0000 120 chrX:5664316-5664436 1.0000 120 chr2R:10195006-10195126 1.0000 120 chr3L:11819761-11819881 1.0000 120 chr3R:24051716-24051836 1.0000 120 chr3L:21859737-21859857 1.0000 120 chr2R:22390400-22390520 1.0000 120 chr3R:20833100-20833220 1.0000 120 chr2R:23615200-23615320 1.0000 120 chr3L:960733-960853 1.0000 120 chr2L:19121059-19121179 1.0000 120 chr3L:14354716-14354836 1.0000 120 chr3R:26556001-26556121 1.0000 120 chr3R:22108452-22108572 1.0000 120 chr2R:12876625-12876745 1.0000 120 chr3R:12439772-12439892 1.0000 120 chr3L:11580068-11580188 1.0000 120 chr3R:14029146-14029266 1.0000 120 chr2R:16581731-16581851 1.0000 120 chr2L:3323585-3323705 1.0000 120 chr3R:11220104-11220224 1.0000 120 chr3R:11688339-11688459 1.0000 120 chr2R:21610069-21610189 1.0000 120 chr3L:10679874-10679994 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_BtbVII/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/BtbVII.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.295 C 0.207 G 0.202 T 0.296 Background letter frequencies (from file dataset with add-one prior applied): A 0.295 C 0.207 G 0.202 T 0.296 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACGTCA MEME-1 width = 8 sites = 44 llr = 423 E-value = 4.9e-027 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a::::9 pos.-specific C 2::a::a: probability G :8::a::1 matrix T 82:::a:: bits 2.3 ** * 2.1 ** * 1.8 ** * 1.6 * **** Relative 1.4 ******* Entropy 1.2 ******* (13.9 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACGTCA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11220104-11220224 12 1.33e-05 GTTACATCGA TGACGTCA CAAAATGCAA chr3R:21176717-21176837 80 1.33e-05 TGGCAAACAA TGACGTCA GTTTTCTCCA chr2R:7049614-7049734 47 1.33e-05 CCAGTCGACA TGACGTCA TGGCTTTGAG chr3R:21434178-21434298 61 1.33e-05 TTGGCACCCA TGACGTCA CGGACTCGCG chr2L:20858902-20859022 34 1.33e-05 AACAAACAAC TGACGTCA CATCCAAAAT chr2R:19169944-19170064 32 1.33e-05 CAAAAAACTA TGACGTCA ATGGTGGGGG chr3R:11648994-11649114 62 1.33e-05 CGCCTAGGTG TGACGTCA GCGACCGAAA chr3L:247712-247832 88 1.33e-05 CACATTCGTC TGACGTCA TGTGTTATAT chr2R:19416412-19416532 60 1.33e-05 CCTTGGAATA TGACGTCA CTTCCTGTCA chr3R:24320153-24320273 54 1.33e-05 CTCGCCTTTG TGACGTCA TCGTGTCAGG chr2R:14577025-14577145 17 1.33e-05 ACGACGCCCG TGACGTCA CCACCCGAGA chr3R:11353439-11353559 62 1.33e-05 TCTTGAGGTG TGACGTCA CGGATGCGAA chr2L:4614496-4614616 85 1.33e-05 TTTACAGCCG TGACGTCA CTATTTTGAC chr3L:5329805-5329925 99 1.33e-05 tctttctctG TGACGTCA AGTGTGCGTC chr3R:8357669-8357789 47 1.33e-05 ACTCCATCGA TGACGTCA TGGTCATATT chr2R:6758882-6759002 83 1.33e-05 TGTCATCCGG TGACGTCA CGGACAACGC chrX:13890483-13890603 11 1.33e-05 CACACGACAA TGACGTCA CTAAACCAGT chr3R:19632699-19632819 70 1.33e-05 TTTTCACGAG TGACGTCA CCGTTGTCGC chr2L:19548346-19548466 52 1.33e-05 TACAGCCAAG TGACGTCA TCATTCGGCA chrX:14929848-14929968 43 1.33e-05 TGTTATTAAG TGACGTCA CGGTGGCACA chr2R:21255624-21255744 93 1.33e-05 AGCTTTTCCG TGACGTCA CAGTTGAAAG chr2L:8116922-8117042 12 1.33e-05 AAGGGCTATC TGACGTCA TAAATTAACT chr2L:20720255-20720375 102 1.33e-05 CGCTCTCGTC TGACGTCA CTTGTCCTTG chr3R:23121050-23121170 62 1.33e-05 GTTATTGCTA TGACGTCA CTGTTGTGAT chr3L:20198159-20198279 25 2.27e-05 CAAAAAACGG CGACGTCA CTACCGCTCG chr3R:25740564-25740684 40 2.27e-05 AAGAGAGTGT CGACGTCA TCATCGGGGG chr2R:21646664-21646784 28 2.27e-05 GTCGTGACTG CGACGTCA CCGTTCACGT chrX:13322566-13322686 100 2.27e-05 ATATAAACGA CGACGTCA ATGAGAACGC chr2R:14186655-14186775 101 2.27e-05 ACAACAAAGG CGACGTCA TCGACGCGAC chr2L:8740165-8740285 109 4.22e-05 AGAGGCGCGC TTACGTCA TTCA chr3L:3149177-3149297 62 4.22e-05 GCGTATATAA TTACGTCA TAAGAATTAA chr2L:20714697-20714817 83 4.22e-05 GGCCCGGCTA TTACGTCA TTTGGGGCCA chr3L:7836830-7836950 54 5.13e-05 CACACGCAGC TGACGTCG TCGCCTGGCG chr2L:552615-552735 95 5.13e-05 ACCTTAAGCA TGACGTCG TGAAACTGGC chr3L:311702-311822 65 5.13e-05 GCCGAAACGA TGACGTCG TCGAAAGCTC chr3L:4550417-4550537 63 6.04e-05 TTCAGTCATA GGACGTCA CCGTTTCAGT chr2R:9464013-9464133 61 6.04e-05 TTTTCGCCGG GGACGTCA TCATGCGTTA chr3L:9355835-9355955 36 7.41e-05 CGCGTAATTT CTACGTCA TATCAATATC chr3L:12834425-12834545 99 7.41e-05 TTCAGTGAAA CTACGTCA GCAGCAGCTA chr3R:12716430-12716550 73 7.41e-05 TATCGTGTGG CTACGTCA TCGGTGGGCT chr2R:24515008-24515128 14 7.41e-05 acgcacTGAG CTACGTCA TCGACGCAAT chr3L:16356523-16356643 46 1.08e-04 AATCATTAGA TGGCGTCA TCGGTTTGGG chr3R:27605890-27606010 13 1.08e-04 ATGAGCTTTA TGACGCCA GCCGTAAGCG chr3L:17008731-17008851 58 1.08e-04 CGTAATTTAT TGCCGTCA CCCAACTAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11220104-11220224 1.3e-05 11_[+1]_101 chr3R:21176717-21176837 1.3e-05 79_[+1]_33 chr2R:7049614-7049734 1.3e-05 46_[+1]_66 chr3R:21434178-21434298 1.3e-05 60_[+1]_52 chr2L:20858902-20859022 1.3e-05 33_[+1]_79 chr2R:19169944-19170064 1.3e-05 31_[+1]_81 chr3R:11648994-11649114 1.3e-05 61_[+1]_51 chr3L:247712-247832 1.3e-05 87_[+1]_25 chr2R:19416412-19416532 1.3e-05 59_[+1]_53 chr3R:24320153-24320273 1.3e-05 53_[+1]_59 chr2R:14577025-14577145 1.3e-05 16_[+1]_96 chr3R:11353439-11353559 1.3e-05 61_[+1]_51 chr2L:4614496-4614616 1.3e-05 84_[+1]_28 chr3L:5329805-5329925 1.3e-05 98_[+1]_14 chr3R:8357669-8357789 1.3e-05 46_[+1]_66 chr2R:6758882-6759002 1.3e-05 82_[+1]_30 chrX:13890483-13890603 1.3e-05 10_[+1]_102 chr3R:19632699-19632819 1.3e-05 69_[+1]_43 chr2L:19548346-19548466 1.3e-05 51_[+1]_61 chrX:14929848-14929968 1.3e-05 42_[+1]_70 chr2R:21255624-21255744 1.3e-05 92_[+1]_20 chr2L:8116922-8117042 1.3e-05 11_[+1]_101 chr2L:20720255-20720375 1.3e-05 101_[+1]_11 chr3R:23121050-23121170 1.3e-05 61_[+1]_51 chr3L:20198159-20198279 2.3e-05 24_[+1]_88 chr3R:25740564-25740684 2.3e-05 39_[+1]_73 chr2R:21646664-21646784 2.3e-05 27_[+1]_85 chrX:13322566-13322686 2.3e-05 99_[+1]_13 chr2R:14186655-14186775 2.3e-05 100_[+1]_12 chr2L:8740165-8740285 4.2e-05 108_[+1]_4 chr3L:3149177-3149297 4.2e-05 61_[+1]_51 chr2L:20714697-20714817 4.2e-05 82_[+1]_30 chr3L:7836830-7836950 5.1e-05 53_[+1]_59 chr2L:552615-552735 5.1e-05 94_[+1]_18 chr3L:311702-311822 5.1e-05 64_[+1]_48 chr3L:4550417-4550537 6e-05 62_[+1]_50 chr2R:9464013-9464133 6e-05 60_[+1]_52 chr3L:9355835-9355955 7.4e-05 35_[+1]_77 chr3L:12834425-12834545 7.4e-05 98_[+1]_14 chr3R:12716430-12716550 7.4e-05 72_[+1]_40 chr2R:24515008-24515128 7.4e-05 13_[+1]_99 chr3L:16356523-16356643 0.00011 45_[+1]_67 chr3R:27605890-27606010 0.00011 12_[+1]_100 chr3L:17008731-17008851 0.00011 57_[+1]_55 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACGTCA width=8 seqs=44 chr3R:11220104-11220224 ( 12) TGACGTCA 1 chr3R:21176717-21176837 ( 80) TGACGTCA 1 chr2R:7049614-7049734 ( 47) TGACGTCA 1 chr3R:21434178-21434298 ( 61) TGACGTCA 1 chr2L:20858902-20859022 ( 34) TGACGTCA 1 chr2R:19169944-19170064 ( 32) TGACGTCA 1 chr3R:11648994-11649114 ( 62) TGACGTCA 1 chr3L:247712-247832 ( 88) TGACGTCA 1 chr2R:19416412-19416532 ( 60) TGACGTCA 1 chr3R:24320153-24320273 ( 54) TGACGTCA 1 chr2R:14577025-14577145 ( 17) TGACGTCA 1 chr3R:11353439-11353559 ( 62) TGACGTCA 1 chr2L:4614496-4614616 ( 85) TGACGTCA 1 chr3L:5329805-5329925 ( 99) TGACGTCA 1 chr3R:8357669-8357789 ( 47) TGACGTCA 1 chr2R:6758882-6759002 ( 83) TGACGTCA 1 chrX:13890483-13890603 ( 11) TGACGTCA 1 chr3R:19632699-19632819 ( 70) TGACGTCA 1 chr2L:19548346-19548466 ( 52) TGACGTCA 1 chrX:14929848-14929968 ( 43) TGACGTCA 1 chr2R:21255624-21255744 ( 93) TGACGTCA 1 chr2L:8116922-8117042 ( 12) TGACGTCA 1 chr2L:20720255-20720375 ( 102) TGACGTCA 1 chr3R:23121050-23121170 ( 62) TGACGTCA 1 chr3L:20198159-20198279 ( 25) CGACGTCA 1 chr3R:25740564-25740684 ( 40) CGACGTCA 1 chr2R:21646664-21646784 ( 28) CGACGTCA 1 chrX:13322566-13322686 ( 100) CGACGTCA 1 chr2R:14186655-14186775 ( 101) CGACGTCA 1 chr2L:8740165-8740285 ( 109) TTACGTCA 1 chr3L:3149177-3149297 ( 62) TTACGTCA 1 chr2L:20714697-20714817 ( 83) TTACGTCA 1 chr3L:7836830-7836950 ( 54) TGACGTCG 1 chr2L:552615-552735 ( 95) TGACGTCG 1 chr3L:311702-311822 ( 65) TGACGTCG 1 chr3L:4550417-4550537 ( 63) GGACGTCA 1 chr2R:9464013-9464133 ( 61) GGACGTCA 1 chr3L:9355835-9355955 ( 36) CTACGTCA 1 chr3L:12834425-12834545 ( 99) CTACGTCA 1 chr3R:12716430-12716550 ( 73) CTACGTCA 1 chr2R:24515008-24515128 ( 14) CTACGTCA 1 chr3L:16356523-16356643 ( 46) TGGCGTCA 1 chr3R:27605890-27606010 ( 13) TGACGCCA 1 chr3L:17008731-17008851 ( 58) TGCCGTCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.67987 E= 4.9e-027 -1210 -1 -215 134 -1210 -1210 205 -90 170 -318 -315 -1210 -1210 227 -1210 -1210 -1210 -1210 230 -1210 -1210 -318 -1210 172 -1210 227 -1210 -1210 166 -1210 -157 -1210 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 44 E= 4.9e-027 0.000000 0.204545 0.045455 0.750000 0.000000 0.000000 0.840909 0.159091 0.954545 0.022727 0.022727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.022727 0.000000 0.977273 0.000000 1.000000 0.000000 0.000000 0.931818 0.000000 0.068182 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 regular expression -------------------------------------------------------------------------------- [TC]GACGTCA -------------------------------------------------------------------------------- Time 7.70 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTRTTTK MEME-2 width = 8 sites = 81 llr = 601 E-value = 6.5e-007 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTRTTTK MEME-2 Description -------------------------------------------------------------------------------- Simplified A 2::6:::2 pos.-specific C :::::::: probability G :::4::13 matrix T 8aa:aa95 bits 2.3 2.1 1.8 ** ** 1.6 ** ** Relative 1.4 ** ** Entropy 1.2 *** *** (10.7 bits) 0.9 ******* 0.7 ******* 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTATTTT consensus G G sequence A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:13158062-13158182 43 4.02e-05 GTATGCAATA TTTGTTTT CAAATCAGAA chrX:13320765-13320885 64 4.02e-05 TCTTAAAATA TTTGTTTT TTAATGTAAC chrX:3282081-3282201 81 4.02e-05 TATTTGCATA TTTGTTTT TGAAACGCAA chr3L:1568451-1568571 26 4.02e-05 AACAGTTGGG TTTGTTTT GGCTCAATTG chr2R:11394524-11394644 63 4.02e-05 CCAAATAAGT TTTGTTTT TGTTATTTAC chr3R:9883698-9883818 12 4.02e-05 TGGTCGCCAT TTTGTTTT CTCACCGTTA chr3L:11005147-11005267 93 4.02e-05 CGATTTTAAC TTTGTTTT CGTTTATATT chr2R:24515008-24515128 53 4.02e-05 TTGATTTGTT TTTGTTTT TGCCTCGCAC chr3R:25306062-25306182 100 4.02e-05 TGAACACCTG TTTGTTTT GCGATTAGCA chr2L:1201505-1201625 94 4.02e-05 GAATAATATT TTTGTTTT TATTTTGAAC chr2L:4614496-4614616 51 4.02e-05 CCGGCATCGG TTTGTTTT GGTTTTTCGA chr2R:15569219-15569339 9 4.02e-05 TAACAGCT TTTGTTTT ATCTGCGCGG chr2R:9464013-9464133 47 4.02e-05 GTTATTGGTC TTTGTTTT CGCCGGGGAC chr3L:960733-960853 102 9.89e-05 TTAATTGTGG TTTATTTT CTAAGGTGTT chr3L:21859737-21859857 79 9.89e-05 CATTTAAGTA TTTATTTT ATAAGTTTAA chr2R:10195006-10195126 30 9.89e-05 CCTAAATTCA TTTATTTT ATGGTGTTGT chr3L:548937-549057 102 9.89e-05 CTTCGCTTTA TTTATTTT TCGCTTATTG chr3L:1609753-1609873 6 9.89e-05 CATCA TTTATTTT CCATTAAATG chr2R:15515725-15515845 110 9.89e-05 CATATTCTCT TTTATTTT GTT chrX:8115944-8116064 52 9.89e-05 AATTACCGTA TTTATTTT GTATATTTGT chr2L:7628489-7628609 38 9.89e-05 GGGTCTACGC TTTATTTT GGGCAGAAAT chr2L:18965681-18965801 103 9.89e-05 ATACGAATAT TTTATTTT ATATGGCAGG chr2R:9819931-9820051 76 9.89e-05 GTGGAGCGCG TTTATTTT TAAACGTCCG chr2R:17918839-17918959 72 9.89e-05 AATTTCAATT TTTATTTT GGGTTAACAA chr3L:12834625-12834745 109 9.89e-05 TTGTGTCTGT TTTATTTT TTTT chr3L:9760274-9760394 34 9.89e-05 GTTTTTAACT TTTATTTT CTGGTCATAA chrX:9355511-9355631 82 9.89e-05 AGTTGTTTAC TTTATTTT AAATTTCTAT chr3R:8357669-8357789 69 9.89e-05 CATATTCAAA TTTATTTT TAAACGCCGC chr3L:12835684-12835804 93 1.26e-04 CTGTGTCATT TTTGTTTG TTGTGTTTTA chrX:10784319-10784439 14 1.26e-04 TGATATCCAA TTTGTTTG CCATACGTAC chr2L:3114246-3114366 23 1.26e-04 CAATCATACT TTTGTTTG TCACATTCTG chr3L:17958421-17958541 18 1.26e-04 GCTTTAGAAC TTTGTTTG CGTACTTTGT chr3R:11688339-11688459 102 1.66e-04 TTTACACACA TTTATTTG GTTATTTCAA chr3R:11220104-11220224 65 1.66e-04 GAAAACTACG TTTATTTG ATGTTCTTAC chr3L:17008731-17008851 97 1.66e-04 AACAAATACA TTTATTTG GCTCGAGTGG chr3L:13912948-13913068 22 1.66e-04 ttatttgtta tttatttG GCATTTTTTG chr3R:7129515-7129635 99 1.66e-04 TTTGTATATC TTTATTTG CAGGCAAATT chr3L:16840581-16840701 25 1.66e-04 ATAAGTGGTT TTTATTTG GGGTGCTTAT chr3R:25544055-25544175 109 1.66e-04 TGTGTGAAGT TTTATTTG TCAA chr3L:698766-698886 17 2.07e-04 CAAGACCCCG TTTGTTTA CACCACCCAA chr2R:18810684-18810804 98 2.07e-04 ATGTTCGGTG TTTGTTTA ATCTCGAGTT chr2L:14230552-14230672 106 2.07e-04 TAAACCCTTT TTTGTTTA TTTCAGT chr3R:12439772-12439892 87 2.65e-04 CTAATGGAAA TTTATTTA ATAGATTATA chr3R:12657121-12657241 18 2.65e-04 TGGCATAATG TTTATTTA TACAAATGCC chr3L:17808946-17809066 26 2.65e-04 AAGCAACAAG TTTATTTA ATAACCGAGC chr2L:20808383-20808503 2 2.65e-04 C TTTATTTA TTTCAATATA chr3L:4025933-4026053 18 2.65e-04 TGTTTTTGCT TTTATTTA TTCCGACACC chr3R:10054384-10054504 76 2.65e-04 TTCAAGCGTA TTTATTTA TATACAGTCA chr2L:18625165-18625285 7 2.65e-04 CTGTTG TTTATTTA TAGTTTAATT chr2R:16139961-16140081 56 2.65e-04 CGCCTTCGCT TTTATTTA CAATGCTGCA chr3R:22057197-22057317 47 2.65e-04 AAAAATATGG TTTATTTA ACTAACAATT chr3R:10884486-10884606 96 2.65e-04 TAAGTGGATA TTTATTTA TTAGTGGATG chr2L:8116922-8117042 61 2.65e-04 TAATTTTTGC TTTATTTA AAAACGTCAC chr3L:8060653-8060773 105 2.93e-04 CATCCTGACA TTTGTTGT TCGGGTGT chr2R:25076866-25076986 93 3.73e-04 GACTTGAACA ATTGTTTT GTCAATTTCG chr3R:14285190-14285310 25 3.73e-04 CGTTTTTCAT TTTATTGT ATAATTTATT chr3L:3149382-3149502 92 3.73e-04 TGTTTGATTT TTTATTGT AAGCGAGAAG chr2R:22508188-22508308 37 3.73e-04 TTCTCTTTAA ATTGTTTT ACACTTCAAC chrX:9868859-9868979 105 3.73e-04 GCACTCGGGA TTTATTGT CCCGTTAG chr2R:12876625-12876745 15 4.50e-04 AGAGATATAT TTTGTTGG CTCTTACTGA chr3R:22108452-22108572 16 4.50e-04 TTTTAGTAAT ATTATTTT CTATTTCAAT chr3R:26556001-26556121 112 4.50e-04 ACTGATTTCG ATTATTTT C chr2R:14140781-14140901 53 4.50e-04 TGCTTTAAGC ATTATTTT TTTAACAGAT chr3L:626682-626802 38 4.50e-04 TTGGCTCGTC ATTATTTT CATCAAATGG chr2R:21646664-21646784 11 4.50e-04 TCCCTCTCTC TTTGTTGG TCGTGACTGC chr2R:16225445-16225565 92 4.50e-04 GTCGTTAGAT TTTGTTGG AAAATTAAGA chr2L:3369263-3369383 88 4.50e-04 CACAATTGTT ATTATTTT CTTAATACTG chr2R:22387317-22387437 112 4.50e-04 TCTCGTAAAC TTTGTTGG G chr3L:12834425-12834545 77 4.50e-04 GGCTCTGCAA TTTGTTGG CCAGTTCAGT chr3R:15402761-15402881 43 4.50e-04 TCTTGACAGA TTTGTTGG GGAGTACTGT chrX:9581896-9582016 54 4.50e-04 TAAGAAATCG ATTATTTT GTATATACAA chr3R:14029146-14029266 34 5.05e-04 ATATGGCGAA ATTGTTTG CCAACCTAAC chr2L:9509745-9509865 110 5.05e-04 AGGGAATGTG ATTGTTTG TTT chr3L:17671904-17672024 15 5.05e-04 TGAACAAGCG TTTATTGG TCTTACTTAC chr2L:2228403-2228523 53 5.05e-04 CATTTGGTTA ATTGTTTG AGGAAGTACA chr3R:17966154-17966274 88 5.45e-04 ATATCGAAGT ATTATTTG CATACATCTA chr3L:11450686-11450806 68 5.45e-04 AATAATGTAT ATTATTTG GTTATTGCGT chr3L:11528462-11528582 30 6.52e-04 TTGCCTCCAT ATTGTTTA TATTTATGCA chr3L:17791645-17791765 91 6.52e-04 TTATACACGC TTTATTGA ATCGAAGTCT chr3R:24102492-24102612 40 6.52e-04 GTGTGATTGA ATTGTTTA CCCCTTTAAA chr3R:12716430-12716550 27 6.52e-04 CCCATAAACA ATTGTTTA CTGCCAGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:13158062-13158182 4e-05 42_[+2]_70 chrX:13320765-13320885 4e-05 63_[+2]_49 chrX:3282081-3282201 4e-05 80_[+2]_32 chr3L:1568451-1568571 4e-05 25_[+2]_87 chr2R:11394524-11394644 4e-05 62_[+2]_50 chr3R:9883698-9883818 4e-05 11_[+2]_101 chr3L:11005147-11005267 4e-05 92_[+2]_20 chr2R:24515008-24515128 4e-05 52_[+2]_60 chr3R:25306062-25306182 4e-05 99_[+2]_13 chr2L:1201505-1201625 4e-05 93_[+2]_19 chr2L:4614496-4614616 4e-05 50_[+2]_62 chr2R:15569219-15569339 4e-05 8_[+2]_104 chr2R:9464013-9464133 4e-05 46_[+2]_66 chr3L:960733-960853 9.9e-05 101_[+2]_11 chr3L:21859737-21859857 9.9e-05 78_[+2]_34 chr2R:10195006-10195126 9.9e-05 29_[+2]_83 chr3L:548937-549057 9.9e-05 101_[+2]_11 chr3L:1609753-1609873 9.9e-05 5_[+2]_107 chr2R:15515725-15515845 9.9e-05 109_[+2]_3 chrX:8115944-8116064 9.9e-05 51_[+2]_61 chr2L:7628489-7628609 9.9e-05 37_[+2]_75 chr2L:18965681-18965801 9.9e-05 102_[+2]_10 chr2R:9819931-9820051 9.9e-05 75_[+2]_37 chr2R:17918839-17918959 9.9e-05 71_[+2]_41 chr3L:12834625-12834745 9.9e-05 108_[+2]_4 chr3L:9760274-9760394 9.9e-05 33_[+2]_79 chrX:9355511-9355631 9.9e-05 81_[+2]_31 chr3R:8357669-8357789 9.9e-05 68_[+2]_44 chr3L:12835684-12835804 0.00013 92_[+2]_20 chrX:10784319-10784439 0.00013 13_[+2]_99 chr2L:3114246-3114366 0.00013 22_[+2]_90 chr3L:17958421-17958541 0.00013 17_[+2]_95 chr3R:11688339-11688459 0.00017 101_[+2]_11 chr3R:11220104-11220224 0.00017 64_[+2]_48 chr3L:17008731-17008851 0.00017 96_[+2]_16 chr3L:13912948-13913068 0.00017 21_[+2]_91 chr3R:7129515-7129635 0.00017 98_[+2]_14 chr3L:16840581-16840701 0.00017 24_[+2]_88 chr3R:25544055-25544175 0.00017 108_[+2]_4 chr3L:698766-698886 0.00021 16_[+2]_96 chr2R:18810684-18810804 0.00021 97_[+2]_15 chr2L:14230552-14230672 0.00021 105_[+2]_7 chr3R:12439772-12439892 0.00027 86_[+2]_26 chr3R:12657121-12657241 0.00027 17_[+2]_95 chr3L:17808946-17809066 0.00027 25_[+2]_87 chr2L:20808383-20808503 0.00027 1_[+2]_111 chr3L:4025933-4026053 0.00027 17_[+2]_95 chr3R:10054384-10054504 0.00027 75_[+2]_37 chr2L:18625165-18625285 0.00027 6_[+2]_106 chr2R:16139961-16140081 0.00027 55_[+2]_57 chr3R:22057197-22057317 0.00027 46_[+2]_66 chr3R:10884486-10884606 0.00027 95_[+2]_17 chr2L:8116922-8117042 0.00027 60_[+2]_52 chr3L:8060653-8060773 0.00029 104_[+2]_8 chr2R:25076866-25076986 0.00037 92_[+2]_20 chr3R:14285190-14285310 0.00037 24_[+2]_88 chr3L:3149382-3149502 0.00037 91_[+2]_21 chr2R:22508188-22508308 0.00037 36_[+2]_76 chrX:9868859-9868979 0.00037 104_[+2]_8 chr2R:12876625-12876745 0.00045 14_[+2]_98 chr3R:22108452-22108572 0.00045 15_[+2]_97 chr3R:26556001-26556121 0.00045 111_[+2]_1 chr2R:14140781-14140901 0.00045 52_[+2]_60 chr3L:626682-626802 0.00045 37_[+2]_75 chr2R:21646664-21646784 0.00045 10_[+2]_102 chr2R:16225445-16225565 0.00045 91_[+2]_21 chr2L:3369263-3369383 0.00045 87_[+2]_25 chr2R:22387317-22387437 0.00045 111_[+2]_1 chr3L:12834425-12834545 0.00045 76_[+2]_36 chr3R:15402761-15402881 0.00045 42_[+2]_70 chrX:9581896-9582016 0.00045 53_[+2]_59 chr3R:14029146-14029266 0.0005 33_[+2]_79 chr2L:9509745-9509865 0.0005 109_[+2]_3 chr3L:17671904-17672024 0.0005 14_[+2]_98 chr2L:2228403-2228523 0.0005 52_[+2]_60 chr3R:17966154-17966274 0.00054 87_[+2]_25 chr3L:11450686-11450806 0.00054 67_[+2]_45 chr3L:11528462-11528582 0.00065 29_[+2]_83 chr3L:17791645-17791765 0.00065 90_[+2]_22 chr3R:24102492-24102612 0.00065 39_[+2]_73 chr3R:12716430-12716550 0.00065 26_[+2]_86 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTRTTTK width=8 seqs=81 chr2L:13158062-13158182 ( 43) TTTGTTTT 1 chrX:13320765-13320885 ( 64) TTTGTTTT 1 chrX:3282081-3282201 ( 81) TTTGTTTT 1 chr3L:1568451-1568571 ( 26) TTTGTTTT 1 chr2R:11394524-11394644 ( 63) TTTGTTTT 1 chr3R:9883698-9883818 ( 12) TTTGTTTT 1 chr3L:11005147-11005267 ( 93) TTTGTTTT 1 chr2R:24515008-24515128 ( 53) TTTGTTTT 1 chr3R:25306062-25306182 ( 100) TTTGTTTT 1 chr2L:1201505-1201625 ( 94) TTTGTTTT 1 chr2L:4614496-4614616 ( 51) TTTGTTTT 1 chr2R:15569219-15569339 ( 9) TTTGTTTT 1 chr2R:9464013-9464133 ( 47) TTTGTTTT 1 chr3L:960733-960853 ( 102) TTTATTTT 1 chr3L:21859737-21859857 ( 79) TTTATTTT 1 chr2R:10195006-10195126 ( 30) TTTATTTT 1 chr3L:548937-549057 ( 102) TTTATTTT 1 chr3L:1609753-1609873 ( 6) TTTATTTT 1 chr2R:15515725-15515845 ( 110) TTTATTTT 1 chrX:8115944-8116064 ( 52) TTTATTTT 1 chr2L:7628489-7628609 ( 38) TTTATTTT 1 chr2L:18965681-18965801 ( 103) TTTATTTT 1 chr2R:9819931-9820051 ( 76) TTTATTTT 1 chr2R:17918839-17918959 ( 72) TTTATTTT 1 chr3L:12834625-12834745 ( 109) TTTATTTT 1 chr3L:9760274-9760394 ( 34) TTTATTTT 1 chrX:9355511-9355631 ( 82) TTTATTTT 1 chr3R:8357669-8357789 ( 69) TTTATTTT 1 chr3L:12835684-12835804 ( 93) TTTGTTTG 1 chrX:10784319-10784439 ( 14) TTTGTTTG 1 chr2L:3114246-3114366 ( 23) TTTGTTTG 1 chr3L:17958421-17958541 ( 18) TTTGTTTG 1 chr3R:11688339-11688459 ( 102) TTTATTTG 1 chr3R:11220104-11220224 ( 65) TTTATTTG 1 chr3L:17008731-17008851 ( 97) TTTATTTG 1 chr3L:13912948-13913068 ( 22) TTTATTTG 1 chr3R:7129515-7129635 ( 99) TTTATTTG 1 chr3L:16840581-16840701 ( 25) TTTATTTG 1 chr3R:25544055-25544175 ( 109) TTTATTTG 1 chr3L:698766-698886 ( 17) TTTGTTTA 1 chr2R:18810684-18810804 ( 98) TTTGTTTA 1 chr2L:14230552-14230672 ( 106) TTTGTTTA 1 chr3R:12439772-12439892 ( 87) TTTATTTA 1 chr3R:12657121-12657241 ( 18) TTTATTTA 1 chr3L:17808946-17809066 ( 26) TTTATTTA 1 chr2L:20808383-20808503 ( 2) TTTATTTA 1 chr3L:4025933-4026053 ( 18) TTTATTTA 1 chr3R:10054384-10054504 ( 76) TTTATTTA 1 chr2L:18625165-18625285 ( 7) TTTATTTA 1 chr2R:16139961-16140081 ( 56) TTTATTTA 1 chr3R:22057197-22057317 ( 47) TTTATTTA 1 chr3R:10884486-10884606 ( 96) TTTATTTA 1 chr2L:8116922-8117042 ( 61) TTTATTTA 1 chr3L:8060653-8060773 ( 105) TTTGTTGT 1 chr2R:25076866-25076986 ( 93) ATTGTTTT 1 chr3R:14285190-14285310 ( 25) TTTATTGT 1 chr3L:3149382-3149502 ( 92) TTTATTGT 1 chr2R:22508188-22508308 ( 37) ATTGTTTT 1 chrX:9868859-9868979 ( 105) TTTATTGT 1 chr2R:12876625-12876745 ( 15) TTTGTTGG 1 chr3R:22108452-22108572 ( 16) ATTATTTT 1 chr3R:26556001-26556121 ( 112) ATTATTTT 1 chr2R:14140781-14140901 ( 53) ATTATTTT 1 chr3L:626682-626802 ( 38) ATTATTTT 1 chr2R:21646664-21646784 ( 11) TTTGTTGG 1 chr2R:16225445-16225565 ( 92) TTTGTTGG 1 chr2L:3369263-3369383 ( 88) ATTATTTT 1 chr2R:22387317-22387437 ( 112) TTTGTTGG 1 chr3L:12834425-12834545 ( 77) TTTGTTGG 1 chr3R:15402761-15402881 ( 43) TTTGTTGG 1 chrX:9581896-9582016 ( 54) ATTATTTT 1 chr3R:14029146-14029266 ( 34) ATTGTTTG 1 chr2L:9509745-9509865 ( 110) ATTGTTTG 1 chr3L:17671904-17672024 ( 15) TTTATTGG 1 chr2L:2228403-2228523 ( 53) ATTGTTTG 1 chr3R:17966154-17966274 ( 88) ATTATTTG 1 chr3L:11450686-11450806 ( 68) ATTATTTG 1 chr3L:11528462-11528582 ( 30) ATTGTTTA 1 chr3L:17791645-17791765 ( 91) TTTATTGA 1 chr3R:24102492-24102612 ( 40) ATTGTTTA 1 chr3R:12716430-12716550 ( 27) ATTGTTTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.3984 E= 6.5e-007 -58 -1298 -1298 144 -1298 -1298 -1298 175 -1298 -1298 -1298 175 95 -1298 109 -1298 -1298 -1298 -1298 175 -1298 -1298 -1298 175 -1298 -1298 -45 152 -41 -1298 49 74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 81 E= 6.5e-007 0.197531 0.000000 0.000000 0.802469 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.567901 0.000000 0.432099 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.148148 0.851852 0.222222 0.000000 0.283951 0.493827 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTRTTTK MEME-2 regular expression -------------------------------------------------------------------------------- TTT[AG]TTT[TGA] -------------------------------------------------------------------------------- Time 14.23 secs. ******************************************************************************** ******************************************************************************** MOTIF GGKGGGDG MEME-3 width = 8 sites = 24 llr = 221 E-value = 2.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGKGGGDG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::2:::4: pos.-specific C ::1::1:: probability G 8a5aa94a matrix T 2:3:::2: bits 2.3 * ** * 2.1 * ** * 1.8 * *** * 1.6 ** *** * Relative 1.4 ** *** * Entropy 1.2 ** *** * (13.3 bits) 0.9 ** *** * 0.7 ** *** * 0.5 ** ***** 0.2 ******** 0.0 -------- Multilevel GGGGGGGG consensus T A sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGDG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:3282081-3282201 30 2.77e-06 ATGGTTGCGG GGGGGGGG GTGGTTATTA chr3R:25740564-25740684 53 6.82e-06 CGTCATCATC GGGGGGAG CCCCAAAGCG chr2L:18549632-18549752 38 6.82e-06 AAACATCAAG GGGGGGAG AGTTTATAGC chr3R:11648994-11649114 36 6.82e-06 AGTGGGTAGT GGGGGGAG CTTTGTGGCG chr2R:21255624-21255744 23 6.82e-06 GTGGAATGAG GGGGGGAG TGAGTGGTTG chr2L:18717493-18717613 98 1.09e-05 CCAAGGGGGT GGTGGGGG GAAGCCCATG chr2R:19169944-19170064 42 1.09e-05 TGACGTCAAT GGTGGGGG AGCCAATAAA chrX:11339297-11339417 46 1.49e-05 tggcggatgc ggggggtg gcggttttgg chr2R:21610069-21610189 109 2.09e-05 TCTTCCTCCA GGTGGGAG TGAT chrX:13890483-13890603 43 2.49e-05 CTGGCGAGGG GGAGGGGG GACCACGCGC chr2R:12679687-12679807 55 2.78e-05 TGAGTTTCAT GGCGGGGG AGACACTACC chr2R:16225445-16225565 32 3.37e-05 ATAGCCAAAG GGAGGGAG CATAACACTC chr2R:15249503-15249623 45 3.37e-05 GTAAGGGTCT GGAGGGAG ATTCTTCCAT chr3L:17003661-17003781 11 4.65e-05 GGGGGGTAGC GGGGGCGG GGCACTCGCT chrX:8115944-8116064 8 4.65e-05 gtgtgtg tgGGGGGG TATTTCACAA chr3L:626682-626802 64 4.65e-05 GGCCGTGAAG GGTGGGTG CCATATGATT chr3L:3691741-3691861 34 4.65e-05 ATATTCTGGT TGGGGGGG CATTAGCAGC chr3L:7836830-7836950 98 4.65e-05 TGGCAAAAAA GGGGGCGG TTAAGGCAGC chr2L:10499766-10499886 66 4.65e-05 tgtgtgtgtg ggtgggtg gtgATCGCCC chr3L:11005147-11005267 50 4.65e-05 GACCATGTGC GGTGGGTG GCCGCAATCG chr2L:18965681-18965801 25 6.08e-05 CATATTTGAA TGGGGGAG GAAACTGCGA chr2R:5992810-5992930 112 8.10e-05 ATGCCAAGGC GGCGGGTG C chr3L:15742043-15742163 93 1.06e-04 GGGGCAAATG GGTGGCAG ACAACGCCCC chr2R:17918839-17918959 112 1.16e-04 TAACTAAGCT TGAGGGGG T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGDG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:3282081-3282201 2.8e-06 29_[+3]_83 chr3R:25740564-25740684 6.8e-06 52_[+3]_60 chr2L:18549632-18549752 6.8e-06 37_[+3]_75 chr3R:11648994-11649114 6.8e-06 35_[+3]_77 chr2R:21255624-21255744 6.8e-06 22_[+3]_90 chr2L:18717493-18717613 1.1e-05 97_[+3]_15 chr2R:19169944-19170064 1.1e-05 41_[+3]_71 chrX:11339297-11339417 1.5e-05 45_[+3]_67 chr2R:21610069-21610189 2.1e-05 108_[+3]_4 chrX:13890483-13890603 2.5e-05 42_[+3]_70 chr2R:12679687-12679807 2.8e-05 54_[+3]_58 chr2R:16225445-16225565 3.4e-05 31_[+3]_81 chr2R:15249503-15249623 3.4e-05 44_[+3]_68 chr3L:17003661-17003781 4.7e-05 10_[+3]_102 chrX:8115944-8116064 4.7e-05 7_[+3]_105 chr3L:626682-626802 4.7e-05 63_[+3]_49 chr3L:3691741-3691861 4.7e-05 33_[+3]_79 chr3L:7836830-7836950 4.7e-05 97_[+3]_15 chr2L:10499766-10499886 4.7e-05 65_[+3]_47 chr3L:11005147-11005267 4.7e-05 49_[+3]_63 chr2L:18965681-18965801 6.1e-05 24_[+3]_88 chr2R:5992810-5992930 8.1e-05 111_[+3]_1 chr3L:15742043-15742163 0.00011 92_[+3]_20 chr2R:17918839-17918959 0.00012 111_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGDG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGKGGGDG width=8 seqs=24 chrX:3282081-3282201 ( 30) GGGGGGGG 1 chr3R:25740564-25740684 ( 53) GGGGGGAG 1 chr2L:18549632-18549752 ( 38) GGGGGGAG 1 chr3R:11648994-11649114 ( 36) GGGGGGAG 1 chr2R:21255624-21255744 ( 23) GGGGGGAG 1 chr2L:18717493-18717613 ( 98) GGTGGGGG 1 chr2R:19169944-19170064 ( 42) GGTGGGGG 1 chrX:11339297-11339417 ( 46) GGGGGGTG 1 chr2R:21610069-21610189 ( 109) GGTGGGAG 1 chrX:13890483-13890603 ( 43) GGAGGGGG 1 chr2R:12679687-12679807 ( 55) GGCGGGGG 1 chr2R:16225445-16225565 ( 32) GGAGGGAG 1 chr2R:15249503-15249623 ( 45) GGAGGGAG 1 chr3L:17003661-17003781 ( 11) GGGGGCGG 1 chrX:8115944-8116064 ( 8) TGGGGGGG 1 chr3L:626682-626802 ( 64) GGTGGGTG 1 chr3L:3691741-3691861 ( 34) TGGGGGGG 1 chr3L:7836830-7836950 ( 98) GGGGGCGG 1 chr2L:10499766-10499886 ( 66) GGTGGGTG 1 chr3L:11005147-11005267 ( 50) GGTGGGTG 1 chr2L:18965681-18965801 ( 25) TGGGGGAG 1 chr2R:5992810-5992930 ( 112) GGCGGGTG 1 chr3L:15742043-15742163 ( 93) GGTGGCAG 1 chr2R:17918839-17918959 ( 112) TGAGGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGDG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7856 E= 2.4e+001 -1123 -1123 204 -83 -1123 -1123 230 -1123 -82 -131 118 -2 -1123 -1123 230 -1123 -1123 -1123 230 -1123 -1123 -72 211 -1123 35 -1123 104 -51 -1123 -1123 230 -1123 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGDG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.4e+001 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 1.000000 0.000000 0.166667 0.083333 0.458333 0.291667 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.125000 0.875000 0.000000 0.375000 0.000000 0.416667 0.208333 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGKGGGDG MEME-3 regular expression -------------------------------------------------------------------------------- GG[GT]GGG[GAT]G -------------------------------------------------------------------------------- Time 20.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CSCTCTCY MEME-4 width = 8 sites = 24 llr = 223 E-value = 3.5e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CSCTCTCY MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::1::::: pos.-specific C a49:a:a5 probability G :6:::3:1 matrix T :::a:8:4 bits 2.3 * * * 2.1 * * * 1.8 * ** * 1.6 * *** * Relative 1.4 ***** * Entropy 1.2 ******* (13.4 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCTCTCC consensus C G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCTCTCY MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:552615-552735 38 6.73e-06 CGCGAGCTTT CGCTCTCC GCAGTGCCCA chr3R:11243474-11243594 58 6.73e-06 TTACATCATT CGCTCTCC AGAACGAGTT chr3L:4103953-4104073 93 1.36e-05 CGCAGTCCCC CCCTCTCC GCTCCCCGCC chr3R:9883698-9883818 46 1.36e-05 GCCCTATGCT CCCTCTCC CTTTGTGTGT chr2L:3114246-3114366 101 1.36e-05 TAGCAAAGAC CCCTCTCC GGAAGGGGTA chr2R:7049614-7049734 82 2.32e-05 CCAAGTGCAG CGCTCTCT TTTGAGAGAG chr2R:7886008-7886128 47 2.32e-05 TCTTTGCGCC CGCTCTCT TTCTCACTTC chrX:11339297-11339417 105 2.32e-05 GCTCTCTTTG CGCTCTCT TCTGCTCG chr2R:12679687-12679807 14 2.32e-05 CATAAATAGC CGCTCTCT CTCTCTCCCT chr3L:5329805-5329925 72 2.32e-05 ccctctctgt cgctctct gcatttgtct chr2L:20341673-20341793 104 2.32e-05 AAAACATTGG CGCTCTCT GCGAGCGAC chr3R:24320153-24320273 42 2.78e-05 CTCAGTCGTT CGCTCGCC TTTGTGACGT chr2R:6812386-6812506 16 2.78e-05 TTGTTATTCA CGCTCGCC GCGAATTTGA chr2L:4614496-4614616 1 2.78e-05 . CGCTCGCC AAAACAGGTT chr2R:21646664-21646784 2 3.77e-05 T CCCTCTCT CTTTGTTGGT chr3L:3755784-3755904 28 3.77e-05 TCTAGTACAC CCCTCTCT TTCCAGCCAC chr3L:123965-124085 101 3.77e-05 CCGAGTACCT CCCTCTCT TTCTCGCCTG chr3L:3431197-3431317 110 3.77e-05 tccgccacca ccctctcT CTC chr2L:17448533-17448653 86 4.24e-05 CCCACGGCCC CCCTCGCC CACCCACGTG chr2L:20720255-20720375 92 6.22e-05 CCAGTCGTCT CGCTCTCG TCTGACGTCA chr3R:25740564-25740684 88 7.86e-05 TCAAAAGCCT CGATCTCC AACACAAAGA chr3L:20198159-20198279 37 8.30e-05 ACGTCACTAC CGCTCGCG AAAAGGAAAA chr3L:16356523-16356643 68 9.29e-05 TTTGGGTCCC CCATCTCC CAACGCAGCT chr2L:20704997-20705117 68 1.18e-04 GTGGCTTTAT CGATCGCC TGTGAACCCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCTCTCY MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:552615-552735 6.7e-06 37_[+4]_75 chr3R:11243474-11243594 6.7e-06 57_[+4]_55 chr3L:4103953-4104073 1.4e-05 92_[+4]_20 chr3R:9883698-9883818 1.4e-05 45_[+4]_67 chr2L:3114246-3114366 1.4e-05 100_[+4]_12 chr2R:7049614-7049734 2.3e-05 81_[+4]_31 chr2R:7886008-7886128 2.3e-05 46_[+4]_66 chrX:11339297-11339417 2.3e-05 104_[+4]_8 chr2R:12679687-12679807 2.3e-05 13_[+4]_99 chr3L:5329805-5329925 2.3e-05 71_[+4]_41 chr2L:20341673-20341793 2.3e-05 103_[+4]_9 chr3R:24320153-24320273 2.8e-05 41_[+4]_71 chr2R:6812386-6812506 2.8e-05 15_[+4]_97 chr2L:4614496-4614616 2.8e-05 [+4]_112 chr2R:21646664-21646784 3.8e-05 1_[+4]_111 chr3L:3755784-3755904 3.8e-05 27_[+4]_85 chr3L:123965-124085 3.8e-05 100_[+4]_12 chr3L:3431197-3431317 3.8e-05 109_[+4]_3 chr2L:17448533-17448653 4.2e-05 85_[+4]_27 chr2L:20720255-20720375 6.2e-05 91_[+4]_21 chr3R:25740564-25740684 7.9e-05 87_[+4]_25 chr3L:20198159-20198279 8.3e-05 36_[+4]_76 chr3L:16356523-16356643 9.3e-05 67_[+4]_45 chr2L:20704997-20705117 0.00012 67_[+4]_45 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCTCTCY MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CSCTCTCY width=8 seqs=24 chr2L:552615-552735 ( 38) CGCTCTCC 1 chr3R:11243474-11243594 ( 58) CGCTCTCC 1 chr3L:4103953-4104073 ( 93) CCCTCTCC 1 chr3R:9883698-9883818 ( 46) CCCTCTCC 1 chr2L:3114246-3114366 ( 101) CCCTCTCC 1 chr2R:7049614-7049734 ( 82) CGCTCTCT 1 chr2R:7886008-7886128 ( 47) CGCTCTCT 1 chrX:11339297-11339417 ( 105) CGCTCTCT 1 chr2R:12679687-12679807 ( 14) CGCTCTCT 1 chr3L:5329805-5329925 ( 72) CGCTCTCT 1 chr2L:20341673-20341793 ( 104) CGCTCTCT 1 chr3R:24320153-24320273 ( 42) CGCTCGCC 1 chr2R:6812386-6812506 ( 16) CGCTCGCC 1 chr2L:4614496-4614616 ( 1) CGCTCGCC 1 chr2R:21646664-21646784 ( 2) CCCTCTCT 1 chr3L:3755784-3755904 ( 28) CCCTCTCT 1 chr3L:123965-124085 ( 101) CCCTCTCT 1 chr3L:3431197-3431317 ( 110) CCCTCTCT 1 chr2L:17448533-17448653 ( 86) CCCTCGCC 1 chr2L:20720255-20720375 ( 92) CGCTCTCG 1 chr3R:25740564-25740684 ( 88) CGATCTCC 1 chr3L:20198159-20198279 ( 37) CGCTCGCG 1 chr3L:16356523-16356643 ( 68) CCATCTCC 1 chr2L:20704997-20705117 ( 68) CGATCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCTCTCY MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.6476 E= 3.5e+001 -1123 227 -1123 -1123 -1123 86 163 -1123 -124 208 -1123 -1123 -1123 -1123 -1123 175 -1123 227 -1123 -1123 -1123 -1123 30 134 -1123 227 -1123 -1123 -1123 127 -128 49 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCTCTCY MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 3.5e+001 0.000000 1.000000 0.000000 0.000000 0.000000 0.375000 0.625000 0.000000 0.125000 0.875000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.250000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.083333 0.416667 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CSCTCTCY MEME-4 regular expression -------------------------------------------------------------------------------- C[GC]CTC[TG]C[CT] -------------------------------------------------------------------------------- Time 26.79 secs. ******************************************************************************** ******************************************************************************** MOTIF CAGCTGWK MEME-5 width = 8 sites = 22 llr = 204 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-5 Description -------------------------------------------------------------------------------- Simplified A :a2:::4: pos.-specific C a::a::1: probability G ::8::a:6 matrix T ::::a:54 bits 2.3 * * * 2.1 * * * 1.8 ** *** 1.6 ** *** Relative 1.4 ****** Entropy 1.2 ****** * (13.4 bits) 0.9 ****** * 0.7 ****** * 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CAGCTGTG consensus A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:15515725-15515845 16 9.13e-06 ATTTACCCCC CAGCTGTG AAATTAAAGC chr3R:12657121-12657241 40 9.13e-06 AATGCCAAAT CAGCTGTG TCAACTGGAT chr3L:123965-124085 81 9.13e-06 ATATTTACTA CAGCTGTG GACCGAGTAC chr3R:22108452-22108572 85 1.82e-05 TAGACCTGAT CAGCTGAG ATTTACAAAT chr3L:17531538-17531658 102 1.82e-05 GATTGCCAAA CAGCTGAG TCGTGTAGAT chrX:11813002-11813122 36 1.82e-05 AGCTCATTTT CAGCTGAG CAAGTCGAGC chr3R:19632699-19632819 40 1.82e-05 CGGTACAAAT CAGCTGAG AGCGGCGCAC chr3L:10679874-10679994 30 3.16e-05 CGAAGAAAAA CAGCTGTT AAACACCCCC chr3L:11580068-11580188 87 3.16e-05 GATAATAACA CAGCTGTT CAAATTGCCA chr3L:14354716-14354836 52 3.16e-05 AGACCCTGCA CAGCTGTT ATACTCTTCC chrX:16573773-16573893 22 3.16e-05 CAGCAAAAAG CAGCTGTT TGCTTCCATG chr2R:9060088-9060208 95 3.16e-05 TCCGTCGGGT CAGCTGTT TGGTCCTAAA chr3L:5329805-5329925 24 3.16e-05 CATTCCCAAA CAGCTGTT GCCGctcgct chr2L:20706031-20706151 22 3.16e-05 CTTTCGTTGG CAGCTGTT GGAAAagaga chr2R:14186655-14186775 20 4.49e-05 ATGAGCGGAA CAGCTGAT GCTCCCGCAT chr3R:21434178-21434298 79 5.13e-05 CGGACTCGCG CAGCTGCG CAGCTTGTCT chr2R:21549103-21549223 89 6.46e-05 TGTGCGCCAG CAACTGTG CAAATATTGA chr3R:22636396-22636516 73 6.46e-05 TGCCAAAGCC CAACTGTG ACTACCAAAA chr2L:7628489-7628609 59 7.79e-05 CAGAAATAAA CAACTGAG TCAACTTAGC chr2R:22116295-22116415 39 7.79e-05 AGTTGAATTC CAACTGAG GAGCTCCAAC chr2L:20714697-20714817 102 7.79e-05 TTGGGGCCAA CAACTGAG CGCAGCTCGT chrX:11339297-11339417 87 8.73e-05 GGCTCCTTTG CAGCTGCT GCTCTCTTTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:15515725-15515845 9.1e-06 15_[+5]_97 chr3R:12657121-12657241 9.1e-06 39_[+5]_73 chr3L:123965-124085 9.1e-06 80_[+5]_32 chr3R:22108452-22108572 1.8e-05 84_[+5]_28 chr3L:17531538-17531658 1.8e-05 101_[+5]_11 chrX:11813002-11813122 1.8e-05 35_[+5]_77 chr3R:19632699-19632819 1.8e-05 39_[+5]_73 chr3L:10679874-10679994 3.2e-05 29_[+5]_83 chr3L:11580068-11580188 3.2e-05 86_[+5]_26 chr3L:14354716-14354836 3.2e-05 51_[+5]_61 chrX:16573773-16573893 3.2e-05 21_[+5]_91 chr2R:9060088-9060208 3.2e-05 94_[+5]_18 chr3L:5329805-5329925 3.2e-05 23_[+5]_89 chr2L:20706031-20706151 3.2e-05 21_[+5]_91 chr2R:14186655-14186775 4.5e-05 19_[+5]_93 chr3R:21434178-21434298 5.1e-05 78_[+5]_34 chr2R:21549103-21549223 6.5e-05 88_[+5]_24 chr3R:22636396-22636516 6.5e-05 72_[+5]_40 chr2L:7628489-7628609 7.8e-05 58_[+5]_54 chr2R:22116295-22116415 7.8e-05 38_[+5]_74 chr2L:20714697-20714817 7.8e-05 101_[+5]_11 chrX:11339297-11339417 8.7e-05 86_[+5]_26 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CAGCTGWK width=8 seqs=22 chr2R:15515725-15515845 ( 16) CAGCTGTG 1 chr3R:12657121-12657241 ( 40) CAGCTGTG 1 chr3L:123965-124085 ( 81) CAGCTGTG 1 chr3R:22108452-22108572 ( 85) CAGCTGAG 1 chr3L:17531538-17531658 ( 102) CAGCTGAG 1 chrX:11813002-11813122 ( 36) CAGCTGAG 1 chr3R:19632699-19632819 ( 40) CAGCTGAG 1 chr3L:10679874-10679994 ( 30) CAGCTGTT 1 chr3L:11580068-11580188 ( 87) CAGCTGTT 1 chr3L:14354716-14354836 ( 52) CAGCTGTT 1 chrX:16573773-16573893 ( 22) CAGCTGTT 1 chr2R:9060088-9060208 ( 95) CAGCTGTT 1 chr3L:5329805-5329925 ( 24) CAGCTGTT 1 chr2L:20706031-20706151 ( 22) CAGCTGTT 1 chr2R:14186655-14186775 ( 20) CAGCTGAT 1 chr3R:21434178-21434298 ( 79) CAGCTGCG 1 chr2R:21549103-21549223 ( 89) CAACTGTG 1 chr3R:22636396-22636516 ( 73) CAACTGTG 1 chr2L:7628489-7628609 ( 59) CAACTGAG 1 chr2R:22116295-22116415 ( 39) CAACTGAG 1 chr2L:20714697-20714817 ( 102) CAACTGAG 1 chrX:11339297-11339417 ( 87) CAGCTGCT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 1.3e+003 -1110 227 -1110 -1110 176 -1110 -1110 -1110 -37 -1110 193 -1110 -1110 227 -1110 -1110 -1110 -1110 -1110 175 -1110 -1110 230 -1110 30 -118 -1110 88 -1110 -1110 155 46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 1.3e+003 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.227273 0.000000 0.772727 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.363636 0.090909 0.000000 0.545455 0.000000 0.000000 0.590909 0.409091 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CAGCTGWK MEME-5 regular expression -------------------------------------------------------------------------------- CA[GA]CTG[TA][GT] -------------------------------------------------------------------------------- Time 33.01 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:23121050-23121170 3.69e-02 61_[+1(1.33e-05)]_51 chr2L:20720255-20720375 2.32e-03 91_[+4(6.22e-05)]_2_[+1(1.33e-05)]_\ 11 chr2R:9464013-9464133 5.26e-03 46_[+2(4.02e-05)]_6_[+1(6.04e-05)]_\ 52 chr2L:8116922-8117042 8.97e-03 11_[+1(1.33e-05)]_101 chr2R:21255624-21255744 7.79e-04 22_[+3(6.82e-06)]_62_[+1(1.33e-05)]_\ 20 chrX:19746439-19746559 6.11e-02 120 chrX:14929848-14929968 9.28e-03 42_[+1(1.33e-05)]_47_[+1(1.33e-05)]_\ 15 chr3L:311702-311822 5.72e-02 64_[+1(5.13e-05)]_48 chr2R:7639394-7639514 8.02e-01 120 chr3R:20985632-20985752 9.54e-01 120 chr2L:19548346-19548466 9.83e-03 51_[+1(1.33e-05)]_61 chr3R:19632699-19632819 1.78e-04 39_[+5(1.82e-05)]_22_[+1(1.33e-05)]_\ 43 chr2L:16801679-16801799 6.77e-01 120 chr3L:4550417-4550537 1.52e-01 62_[+1(6.04e-05)]_50 chr3R:10884486-10884606 2.33e-01 120 chr2L:20341673-20341793 3.25e-02 103_[+4(2.32e-05)]_9 chr2L:20706031-20706151 1.13e-01 21_[+5(3.16e-05)]_91 chrX:13890483-13890603 1.48e-03 10_[+1(1.33e-05)]_24_[+3(2.49e-05)]_\ 14_[+3(6.67e-05)]_48 chr3R:11243474-11243594 2.12e-02 57_[+4(6.73e-06)]_55 chr2L:20704997-20705117 1.00e-02 120 chr2R:6758882-6759002 1.86e-03 63_[+5(8.73e-05)]_11_[+1(1.33e-05)]_\ 30 chr3R:23178205-23178325 2.65e-01 120 chr3R:8357669-8357789 4.13e-04 46_[+1(1.33e-05)]_14_[+2(9.89e-05)]_\ 44 chrX:9868859-9868979 2.05e-01 120 chrX:9581896-9582016 6.68e-01 120 chr3L:3431197-3431317 5.97e-03 109_[+4(3.77e-05)]_3 chr2R:15569219-15569339 8.76e-02 8_[+2(4.02e-05)]_104 chr3L:5329805-5329925 1.69e-05 23_[+5(3.16e-05)]_2_[+4(4.90e-05)]_\ 20_[+4(3.77e-05)]_2_[+4(2.32e-05)]_19_[+1(1.33e-05)]_14 chr3R:25544055-25544175 1.26e-02 120 chr3L:17958421-17958541 4.46e-01 120 chr2R:7727646-7727766 6.58e-01 120 chr2L:10144623-10144743 4.63e-01 120 chr3R:11669649-11669769 6.72e-01 120 chr2L:85210-85330 5.82e-01 120 chr2R:12679687-12679807 1.85e-03 13_[+4(2.32e-05)]_33_[+3(2.78e-05)]_\ 58 chr2L:14230552-14230672 1.68e-01 120 chr2R:22293508-22293628 1.53e-01 120 chr2L:4614496-4614616 4.36e-06 [+4(2.78e-05)]_42_[+2(4.02e-05)]_26_\ [+1(1.33e-05)]_28 chr3R:11353439-11353559 5.72e-03 61_[+1(1.33e-05)]_51 chr2L:1201505-1201625 1.18e-01 93_[+2(4.02e-05)]_19 chr2L:3114246-3114366 3.11e-03 100_[+4(1.36e-05)]_12 chr3R:25306062-25306182 3.38e-02 99_[+2(4.02e-05)]_13 chrX:9355511-9355631 1.40e-01 81_[+2(9.89e-05)]_31 chr2R:14577025-14577145 5.82e-02 16_[+1(1.33e-05)]_96 chr2R:6812386-6812506 1.12e-02 15_[+4(2.78e-05)]_97 chr2R:21082676-21082796 6.45e-01 120 chr3R:24320153-24320273 3.23e-04 41_[+4(2.78e-05)]_4_[+1(1.33e-05)]_\ 59 chr2R:7014434-7014554 4.65e-01 120 chr3R:15198461-15198581 2.50e-01 120 chr2L:20714697-20714817 2.36e-03 82_[+1(4.22e-05)]_11_[+5(7.79e-05)]_\ 11 chr3R:10884695-10884815 3.02e-01 120 chr2R:14042640-14042760 2.98e-01 120 chr2R:14186655-14186775 8.12e-03 19_[+5(4.49e-05)]_13_[+1(5.13e-05)]_\ 52_[+1(2.27e-05)]_12 chr2R:24515008-24515128 1.01e-02 13_[+1(7.41e-05)]_25_[+2(4.02e-05)]_\ 66 chr3L:11005147-11005267 4.55e-03 49_[+3(4.65e-05)]_35_[+2(4.02e-05)]_\ 20 chr3L:1738774-1738894 8.77e-01 120 chr2L:19819979-19820099 7.03e-01 120 chr2R:19416412-19416532 8.43e-03 59_[+1(1.33e-05)]_53 chr3L:247712-247832 8.94e-02 87_[+1(1.33e-05)]_25 chr3R:12716430-12716550 1.79e-02 72_[+1(7.41e-05)]_40 chr3R:11648994-11649114 1.35e-03 35_[+3(6.82e-06)]_18_[+1(1.33e-05)]_\ 51 chr3R:22057197-22057317 4.24e-01 120 chr3R:16213980-16214100 7.59e-01 120 chr2R:19169944-19170064 1.40e-04 31_[+1(1.33e-05)]_2_[+3(1.09e-05)]_\ 71 chr2L:2228403-2228523 6.85e-02 120 chr3R:24073888-24074008 5.48e-01 120 chr3R:15402761-15402881 2.39e-01 120 chr2L:17448533-17448653 1.09e-01 85_[+4(4.24e-05)]_27 chr3R:24102492-24102612 1.27e-01 120 chr2L:1619298-1619418 8.82e-01 120 chr3L:21010242-21010362 4.46e-01 120 chr2R:23605297-23605417 9.02e-01 120 chr3L:9402054-9402174 4.32e-01 120 chrX:19281419-19281539 3.52e-01 120 chr2L:10499766-10499886 1.57e-02 65_[+3(4.65e-05)]_47 chr3L:18846180-18846300 9.79e-01 120 chr2R:16139961-16140081 3.98e-02 120 chr2R:23869532-23869652 4.13e-01 120 chrX:13322566-13322686 1.54e-01 99_[+1(2.27e-05)]_13 chrX:18125665-18125785 9.97e-01 120 chr2L:18625165-18625285 2.53e-01 120 chr2L:18549632-18549752 6.07e-02 37_[+3(6.82e-06)]_75 chr3L:15742043-15742163 1.53e-01 120 chrX:11339297-11339417 7.88e-05 29_[+3(4.65e-05)]_8_[+3(1.49e-05)]_\ 33_[+5(8.73e-05)]_10_[+4(2.32e-05)]_8 chr3R:22636396-22636516 1.71e-01 72_[+5(6.46e-05)]_40 chr3L:17671904-17672024 4.07e-01 120 chr3R:9883698-9883818 3.77e-03 11_[+2(4.02e-05)]_26_[+4(1.36e-05)]_\ 67 chr3L:123965-124085 2.28e-03 80_[+5(9.13e-06)]_12_[+4(3.77e-05)]_\ 12 chr2R:15249503-15249623 4.02e-02 44_[+3(3.37e-05)]_68 chr3R:29866889-29867009 3.02e-01 120 chr3L:17539032-17539152 8.74e-01 120 chr2R:11394524-11394644 1.04e-01 62_[+2(4.02e-05)]_50 chr2L:12494027-12494147 7.41e-01 120 chr3L:1967710-1967830 7.47e-01 120 chr3L:3149177-3149297 8.57e-02 61_[+1(4.22e-05)]_51 chr3L:16002605-16002725 4.94e-01 120 chr3R:21158830-21158950 3.22e-01 120 chr3R:26185375-26185495 8.91e-01 120 chr3R:20837367-20837487 1.19e-01 120 chr3L:7376923-7377043 7.54e-01 120 chr3R:16982387-16982507 5.28e-01 120 chr2R:13438168-13438288 9.69e-01 120 chrX:11813002-11813122 9.92e-02 35_[+5(1.82e-05)]_50_[+5(1.82e-05)]_\ 19 chr2L:20858902-20859022 2.87e-02 33_[+1(1.33e-05)]_79 chr3L:12834425-12834545 2.12e-02 98_[+1(7.41e-05)]_14 chr2R:10395788-10395908 4.84e-01 120 chr3L:9760274-9760394 2.60e-01 33_[+2(9.89e-05)]_79 chr2R:8651815-8651935 1.55e-01 120 chr2R:9387175-9387295 7.25e-01 120 chr3R:16305674-16305794 4.00e-01 120 chr2R:7749791-7749911 5.10e-01 120 chr2R:7886008-7886128 3.31e-03 46_[+4(2.32e-05)]_66 chr3R:21434178-21434298 7.63e-04 60_[+1(1.33e-05)]_10_[+5(5.13e-05)]_\ 34 chr2R:6881209-6881329 6.26e-01 120 chr3R:10054384-10054504 3.24e-01 120 chr3L:9355835-9355955 2.60e-01 35_[+1(7.41e-05)]_77 chr3L:14992887-14993007 1.58e-01 120 chr2L:9509745-9509865 3.44e-01 120 chr2L:552615-552735 9.87e-04 37_[+4(6.73e-06)]_15_[+4(4.90e-05)]_\ 26_[+1(5.13e-05)]_18 chr3R:24319935-24320055 6.85e-01 120 chr3L:12834625-12834745 1.35e-01 108_[+2(9.89e-05)]_4 chr3L:4103953-4104073 5.95e-02 92_[+4(1.36e-05)]_20 chr3R:23110801-23110921 9.25e-01 120 chr2R:22508188-22508308 1.35e-01 120 chr2L:12700744-12700864 9.68e-01 120 chr3L:4025933-4026053 1.26e-01 120 chr3R:9390350-9390470 1.13e-01 120 chr2R:18810684-18810804 2.05e-01 120 chr3L:3149382-3149502 2.46e-01 120 chr2R:22387317-22387437 6.13e-01 120 chr3R:23284416-23284536 8.66e-01 120 chr2R:7049614-7049734 8.23e-04 46_[+1(1.33e-05)]_27_[+4(2.32e-05)]_\ 31 chr2L:20808383-20808503 6.66e-01 120 chr3L:7836830-7836950 4.74e-04 53_[+1(5.13e-05)]_36_[+3(4.65e-05)]_\ 15 chr3L:11450686-11450806 1.08e-01 120 chr3R:29621005-29621125 4.14e-01 120 chr3L:16840581-16840701 1.48e-01 120 chr2R:17918839-17918959 1.03e-02 71_[+2(9.89e-05)]_41 chr3L:3134273-3134393 4.32e-01 120 chr3L:3691741-3691861 6.67e-02 33_[+3(4.65e-05)]_79 chr3L:17049674-17049794 7.85e-01 120 chr3L:1568451-1568571 9.09e-02 25_[+2(4.02e-05)]_17_[+2(9.89e-05)]_\ 62 chr3R:18296278-18296398 6.64e-01 120 chr3R:6433382-6433502 8.81e-01 120 chr3R:17966154-17966274 5.71e-01 120 chr2L:3369263-3369383 1.67e-02 120 chr3R:11968568-11968688 6.06e-01 120 chr3R:7129515-7129635 2.12e-01 120 chr3L:13912948-13913068 2.52e-01 120 chr2R:22116295-22116415 6.80e-02 38_[+5(7.79e-05)]_74 chr3L:17008731-17008851 2.68e-02 120 chr3R:13976163-13976283 1.21e-01 120 chr2L:18717493-18717613 7.89e-02 97_[+3(1.09e-05)]_15 chr2R:9819931-9820051 1.53e-02 75_[+2(9.89e-05)]_37 chr2R:17020107-17020227 8.22e-01 120 chr3R:13441804-13441924 1.69e-01 120 chrX:3282081-3282201 4.54e-04 27_[+3(2.77e-06)]_45_[+2(4.02e-05)]_\ 32 chr2R:16225445-16225565 5.70e-02 31_[+3(3.37e-05)]_81 chr3R:4359760-4359880 7.75e-02 120 chr3L:3755784-3755904 2.17e-02 3_[+4(3.77e-05)]_16_[+4(3.77e-05)]_\ 85 chr3R:27605890-27606010 2.36e-01 120 chr3L:698766-698886 4.47e-01 120 chr3R:15129022-15129142 9.05e-01 120 chr3L:22838136-22838256 2.65e-01 120 chr2R:18435148-18435268 8.54e-01 120 chr3R:13383003-13383123 2.57e-01 120 chrX:13320765-13320885 3.20e-01 63_[+2(4.02e-05)]_49 chr3L:300170-300290 1.97e-01 120 chr3L:606771-606891 6.24e-01 120 chr2R:5992810-5992930 4.36e-01 111_[+3(8.10e-05)]_1 chr2R:15813461-15813581 1.24e-01 120 chr2L:18965681-18965801 1.70e-02 24_[+3(6.08e-05)]_70_[+2(9.89e-05)]_\ 10 chr2L:7628489-7628609 6.11e-03 37_[+2(9.89e-05)]_13_[+5(7.79e-05)]_\ 54 chr2L:11271997-11272117 4.18e-02 120 chr3R:29651591-29651711 9.98e-01 120 chr3L:17791645-17791765 4.36e-01 120 chr3L:17808946-17809066 3.02e-01 120 chr2R:21646664-21646784 1.04e-03 1_[+4(3.77e-05)]_18_[+1(2.27e-05)]_\ 85 chr2L:9908595-9908715 8.58e-02 120 chr3R:14285190-14285310 1.09e-01 120 chr3R:25740564-25740684 1.75e-05 39_[+1(2.27e-05)]_5_[+3(6.82e-06)]_\ 27_[+4(7.86e-05)]_25 chr3L:626682-626802 3.15e-02 63_[+3(4.65e-05)]_49 chrX:18243750-18243870 8.98e-02 120 chr3L:19847114-19847234 5.95e-01 120 chr3L:20198159-20198279 1.47e-02 24_[+1(2.27e-05)]_4_[+4(8.30e-05)]_\ 76 chr2L:13158062-13158182 2.83e-01 42_[+2(4.02e-05)]_70 chr2L:8740165-8740285 7.20e-02 108_[+1(4.22e-05)]_4 chr3L:639634-639754 3.06e-01 120 chr3R:12657121-12657241 9.63e-03 39_[+5(9.13e-06)]_73 chr3L:16356307-16356427 4.16e-02 120 chr3L:1189327-1189447 9.20e-02 120 chr3L:11528462-11528582 6.44e-01 120 chrX:10784319-10784439 2.32e-01 120 chr2R:21549103-21549223 4.16e-02 88_[+5(6.46e-05)]_24 chr3L:16356523-16356643 3.91e-03 67_[+4(9.29e-05)]_45 chr3L:15549025-15549145 8.53e-01 120 chr3L:17531538-17531658 1.53e-02 101_[+5(1.82e-05)]_11 chr3L:16958791-16958911 8.61e-01 120 chr2R:25076866-25076986 3.66e-01 120 chr2R:25012076-25012196 7.78e-01 120 chrX:11885460-11885580 9.71e-01 120 chr2R:13909073-13909193 4.56e-01 120 chr3R:21637107-21637227 6.68e-02 120 chr2R:12035190-12035310 5.99e-01 120 chr3L:8060653-8060773 9.08e-02 120 chr2R:14908358-14908478 5.12e-01 120 chr2R:15846374-15846494 5.64e-01 120 chr2L:10231230-10231350 5.57e-01 120 chrX:8115944-8116064 2.28e-03 7_[+3(4.65e-05)]_36_[+2(9.89e-05)]_\ 61 chr2L:8031574-8031694 1.02e-01 120 chr3L:17003661-17003781 2.15e-02 10_[+3(4.65e-05)]_102 chr2L:1723165-1723285 2.96e-01 120 chr2R:9060088-9060208 4.38e-03 94_[+5(3.16e-05)]_18 chr3L:12835684-12835804 2.84e-02 120 chr2R:15515725-15515845 3.43e-03 15_[+5(9.13e-06)]_86_[+2(9.89e-05)]_\ 3 chr2L:20793956-20794076 6.70e-01 120 chr3L:1609753-1609873 3.96e-01 5_[+2(9.89e-05)]_107 chrX:16573773-16573893 6.72e-03 21_[+5(3.16e-05)]_91 chrX:13817588-13817708 9.87e-01 120 chr3L:17113406-17113526 5.25e-01 120 chr2L:3121767-3121887 8.63e-01 120 chr2L:10321766-10321886 8.00e-01 120 chr3L:17310585-17310705 7.51e-01 120 chr3L:4603528-4603648 9.96e-01 120 chr3R:21176717-21176837 8.48e-02 79_[+1(1.33e-05)]_33 chr3L:548937-549057 1.06e-01 101_[+2(9.89e-05)]_11 chr2R:14140781-14140901 5.28e-01 120 chrX:5664316-5664436 1.21e-01 120 chr2R:10195006-10195126 1.67e-01 29_[+2(9.89e-05)]_83 chr3L:11819761-11819881 4.75e-01 120 chr3R:24051716-24051836 8.89e-02 120 chr3L:21859737-21859857 2.79e-01 78_[+2(9.89e-05)]_34 chr2R:22390400-22390520 9.59e-01 120 chr3R:20833100-20833220 9.08e-01 120 chr2R:23615200-23615320 9.83e-01 120 chr3L:960733-960853 1.76e-01 101_[+2(9.89e-05)]_11 chr2L:19121059-19121179 8.07e-01 120 chr3L:14354716-14354836 2.42e-02 51_[+5(3.16e-05)]_61 chr3R:26556001-26556121 6.56e-01 120 chr3R:22108452-22108572 3.47e-02 84_[+5(1.82e-05)]_28 chr2R:12876625-12876745 3.67e-01 120 chr3R:12439772-12439892 7.28e-02 120 chr3L:11580068-11580188 6.73e-02 86_[+5(3.16e-05)]_26 chr3R:14029146-14029266 2.88e-01 120 chr2R:16581731-16581851 8.38e-01 120 chr2L:3323585-3323705 2.63e-01 120 chr3R:11220104-11220224 6.55e-03 11_[+1(1.33e-05)]_101 chr3R:11688339-11688459 2.95e-01 120 chr2R:21610069-21610189 4.05e-02 108_[+3(2.09e-05)]_4 chr3L:10679874-10679994 1.08e-01 29_[+5(3.16e-05)]_83 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n07.farnam.hpc.yale.internal ********************************************************************************