******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Blimp-1.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:10781391-10781511 1.0000 120 chr3L:5608925-5609045 1.0000 120 chrX:1856757-1856877 1.0000 120 chr3L:16704371-16704491 1.0000 120 chrX:11757031-11757151 1.0000 120 chr3L:16340023-16340143 1.0000 120 chr2L:11502862-11502982 1.0000 120 chr3R:10149812-10149932 1.0000 120 chr3L:13381320-13381440 1.0000 120 chr2R:7311029-7311149 1.0000 120 chrX:1304152-1304272 1.0000 120 chr2L:7861868-7861988 1.0000 120 chr2R:8253914-8254034 1.0000 120 chr3R:4961037-4961157 1.0000 120 chr2R:11953609-11953729 1.0000 120 chr2L:18518996-18519116 1.0000 120 chr3L:2397927-2398047 1.0000 120 chr2R:9013620-9013740 1.0000 120 chr3R:24778357-24778477 1.0000 120 chr3R:31477306-31477426 1.0000 120 chr3R:8970846-8970966 1.0000 120 chr3R:16594181-16594301 1.0000 120 chr3R:7159741-7159861 1.0000 120 chr3L:7821314-7821434 1.0000 120 chr3R:6097165-6097285 1.0000 120 chr3R:6227136-6227256 1.0000 120 chrX:17255816-17255936 1.0000 120 chr2R:24758129-24758249 1.0000 120 chr2R:7284644-7284764 1.0000 120 chr3L:9569333-9569453 1.0000 120 chr3L:13250192-13250312 1.0000 120 chr3L:14429097-14429217 1.0000 120 chr2L:14687498-14687618 1.0000 120 chr3L:1212252-1212372 1.0000 120 chr3L:16546298-16546418 1.0000 120 chrX:2363863-2363983 1.0000 120 chrX:19163585-19163705 1.0000 120 chr3R:9879425-9879545 1.0000 120 chr3R:21700607-21700727 1.0000 120 chr2R:18898290-18898410 1.0000 120 chr2R:7295339-7295459 1.0000 120 chr3L:13169419-13169539 1.0000 120 chr2R:14319610-14319730 1.0000 120 chr3R:23785427-23785547 1.0000 120 chr2R:24259504-24259624 1.0000 120 chr2R:23874228-23874348 1.0000 120 chr2L:14179530-14179650 1.0000 120 chr3R:31245927-31246047 1.0000 120 chr3L:3274911-3275031 1.0000 120 chr2R:8999686-8999806 1.0000 120 chr3R:4811273-4811393 1.0000 120 chrX:2991071-2991191 1.0000 120 chr3R:23734710-23734830 1.0000 120 chrX:14894011-14894131 1.0000 120 chrX:11842118-11842238 1.0000 120 chrX:17181371-17181491 1.0000 120 chrX:13192378-13192498 1.0000 120 chr2R:7747630-7747750 1.0000 120 chr2L:19944807-19944927 1.0000 120 chr3L:17938761-17938881 1.0000 120 chr3L:4533359-4533479 1.0000 120 chr3R:6245107-6245227 1.0000 120 chr3L:16433695-16433815 1.0000 120 chr3L:516683-516803 1.0000 120 chr2R:7985826-7985946 1.0000 120 chr3L:21558611-21558731 1.0000 120 chr3R:10154096-10154216 1.0000 120 chrX:9224562-9224682 1.0000 120 chrX:12001146-12001266 1.0000 120 chr2L:13949928-13950048 1.0000 120 chr3R:6237843-6237963 1.0000 120 chr2R:18925871-18925991 1.0000 120 chr2R:16089765-16089885 1.0000 120 chr3R:24202850-24202970 1.0000 120 chrX:5787003-5787123 1.0000 120 chr3R:24714550-24714670 1.0000 120 chr3L:3105988-3106108 1.0000 120 chr2L:20368712-20368832 1.0000 120 chr2L:1665546-1665666 1.0000 120 chr3L:4265950-4266070 1.0000 120 chr2L:19112334-19112454 1.0000 120 chrX:17204301-17204421 1.0000 120 chr2R:1649473-1649593 1.0000 120 chr3R:6316950-6317070 1.0000 120 chr2R:19812936-19813056 1.0000 120 chr2R:18913000-18913120 1.0000 120 chr3R:27035906-27036026 1.0000 120 chr2R:8979701-8979821 1.0000 120 chr2R:6968686-6968806 1.0000 120 chr2R:14768388-14768508 1.0000 120 chr2L:19783267-19783387 1.0000 120 chrX:13146004-13146124 1.0000 120 chr2L:13918505-13918625 1.0000 120 chr3L:3108999-3109119 1.0000 120 chr3L:18017801-18017921 1.0000 120 chr3R:24524554-24524674 1.0000 120 chr3L:21741169-21741289 1.0000 120 chr2L:18619338-18619458 1.0000 120 chr3R:4475519-4475639 1.0000 120 chr3L:4309349-4309469 1.0000 120 chrX:2279958-2280078 1.0000 120 chrX:12453862-12453982 1.0000 120 chr3L:16406883-16407003 1.0000 120 chrX:1100483-1100603 1.0000 120 chrX:22512221-22512341 1.0000 120 chrX:12501572-12501692 1.0000 120 chrX:5297232-5297352 1.0000 120 chr3L:4296928-4297048 1.0000 120 chrX:10089060-10089180 1.0000 120 chr3R:15436961-15437081 1.0000 120 chrX:8882970-8883090 1.0000 120 chr3L:13027010-13027130 1.0000 120 chrX:8841588-8841708 1.0000 120 chr2R:23873098-23873218 1.0000 120 chr3L:2148813-2148933 1.0000 120 chr3R:13913683-13913803 1.0000 120 chr3L:4269332-4269452 1.0000 120 chr3R:20969572-20969692 1.0000 120 chr2R:14420766-14420886 1.0000 120 chr3L:16656247-16656367 1.0000 120 chr3R:15430463-15430583 1.0000 120 chr2L:14169792-14169912 1.0000 120 chrX:16617461-16617581 1.0000 120 chr2R:10069712-10069832 1.0000 120 chr2R:15739479-15739599 1.0000 120 chr3L:21291220-21291340 1.0000 120 chr2R:23443930-23444050 1.0000 120 chr2R:24325453-24325573 1.0000 120 chr3R:9217746-9217866 1.0000 120 chr3R:11661326-11661446 1.0000 120 chr3L:4302635-4302755 1.0000 120 chr3L:14743430-14743550 1.0000 120 chrX:9647219-9647339 1.0000 120 chr3R:31528778-31528898 1.0000 120 chr3R:21857203-21857323 1.0000 120 chr3R:24773183-24773303 1.0000 120 chrX:8893507-8893627 1.0000 120 chr3L:6255380-6255500 1.0000 120 chr2L:14207273-14207393 1.0000 120 chrX:5783397-5783517 1.0000 120 chr2R:18786150-18786270 1.0000 120 chr2R:16020753-16020873 1.0000 120 chr3L:17488729-17488849 1.0000 120 chrX:13819830-13819950 1.0000 120 chr3L:8772342-8772462 1.0000 120 chr3R:4127637-4127757 1.0000 120 chr3R:28684944-28685064 1.0000 120 chr3R:29893169-29893289 1.0000 120 chrX:14486858-14486978 1.0000 120 chr2R:17397319-17397439 1.0000 120 chr3L:17960386-17960506 1.0000 120 chrX:22511692-22511812 1.0000 120 chr3L:22417906-22418026 1.0000 120 chr3L:21301903-21302023 1.0000 120 chr3L:4304378-4304498 1.0000 120 chr3L:21647975-21648095 1.0000 120 chr3R:31558818-31558938 1.0000 120 chr2R:17621724-17621844 1.0000 120 chrX:14173560-14173680 1.0000 120 chrX:17513399-17513519 1.0000 120 chr2R:6193021-6193141 1.0000 120 chrX:17715080-17715200 1.0000 120 chr3L:1755056-1755176 1.0000 120 chr2L:14641539-14641659 1.0000 120 chr3L:6785369-6785489 1.0000 120 chr3L:17935148-17935268 1.0000 120 chr2R:5900636-5900756 1.0000 120 chr3R:24968154-24968274 1.0000 120 chr3R:31483199-31483319 1.0000 120 chr3L:8294729-8294849 1.0000 120 chr3R:31500246-31500366 1.0000 120 chr2L:3630905-3631025 1.0000 120 chr3L:2437710-2437830 1.0000 120 chr3R:15436337-15436457 1.0000 120 chr3R:31542054-31542174 1.0000 120 chr3R:16543175-16543295 1.0000 120 chr2R:13926936-13927056 1.0000 120 chr2R:23056004-23056124 1.0000 120 chr3R:28827335-28827455 1.0000 120 chr2R:22900503-22900623 1.0000 120 chr3L:6268490-6268610 1.0000 120 chr2L:8735137-8735257 1.0000 120 chr3R:31327982-31328102 1.0000 120 chr3L:21117599-21117719 1.0000 120 chr2L:14668539-14668659 1.0000 120 chrX:15172010-15172130 1.0000 120 chr3L:5599781-5599901 1.0000 120 chr3R:8946543-8946663 1.0000 120 chrX:4662352-4662472 1.0000 120 chr2L:7004308-7004428 1.0000 120 chr3R:12666345-12666465 1.0000 120 chrX:15170729-15170849 1.0000 120 chr3R:24216163-24216283 1.0000 120 chr3L:16466656-16466776 1.0000 120 chr3L:3352692-3352812 1.0000 120 chr2R:11943416-11943536 1.0000 120 chrX:1312665-1312785 1.0000 120 chr3R:24712468-24712588 1.0000 120 chrX:10216773-10216893 1.0000 120 chrX:5781900-5782020 1.0000 120 chr2R:18108899-18109019 1.0000 120 chr3L:16271035-16271155 1.0000 120 chr2R:5880582-5880702 1.0000 120 chr3R:6240402-6240522 1.0000 120 chr2R:18238879-18238999 1.0000 120 chr2R:8987014-8987134 1.0000 120 chr3R:11608605-11608725 1.0000 120 chr2R:24585599-24585719 1.0000 120 chr3R:29719160-29719280 1.0000 120 chr2L:11505038-11505158 1.0000 120 chr3R:16666056-16666176 1.0000 120 chrX:3885970-3886090 1.0000 120 chr3L:3108355-3108475 1.0000 120 chrX:11759631-11759751 1.0000 120 chr2R:17635502-17635622 1.0000 120 chr2R:9969594-9969714 1.0000 120 chr3R:6226313-6226433 1.0000 120 chr2L:8861579-8861699 1.0000 120 chrX:8258737-8258857 1.0000 120 chr3R:21094431-21094551 1.0000 120 chr3R:12360031-12360151 1.0000 120 chrX:11724857-11724977 1.0000 120 chr3R:21067053-21067173 1.0000 120 chrX:22857251-22857371 1.0000 120 chr3R:31559020-31559140 1.0000 120 chr2L:10663144-10663264 1.0000 120 chr2R:7744467-7744587 1.0000 120 chr2L:4801855-4801975 1.0000 120 chr2R:18913833-18913953 1.0000 120 chr3R:6102865-6102985 1.0000 120 chr3L:21704263-21704383 1.0000 120 chr3L:18988189-18988309 1.0000 120 chr2L:10515954-10516074 1.0000 120 chr2R:12566692-12566812 1.0000 120 chr2R:23784758-23784878 1.0000 120 chrX:12002711-12002831 1.0000 120 chr2L:8287015-8287135 1.0000 120 chrX:17586050-17586170 1.0000 120 chr3R:23307932-23308052 1.0000 120 chr3R:13816860-13816980 1.0000 120 chr2L:7086715-7086835 1.0000 120 chrX:18673039-18673159 1.0000 120 chr3R:7147113-7147233 1.0000 120 chr3R:19033544-19033664 1.0000 120 chr2R:16796492-16796612 1.0000 120 chr2R:20158739-20158859 1.0000 120 chr2L:4799597-4799717 1.0000 120 chr3R:6688323-6688443 1.0000 120 chr3R:6153713-6153833 1.0000 120 chr3L:7106531-7106651 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Blimp-1/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Blimp-1.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.283 C 0.221 G 0.224 T 0.272 Background letter frequencies (from file dataset with add-one prior applied): A 0.283 C 0.221 G 0.224 T 0.272 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TCACTTTC MEME-1 width = 8 sites = 133 llr = 1068 E-value = 3.6e-095 ******************************************************************************** -------------------------------------------------------------------------------- Motif TCACTTTC MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::61:::: pos.-specific C :9:8:::7 probability G ::3::::: matrix T 9111aaa3 bits 2.2 2.0 * * 1.7 *** 1.5 ** *** Relative 1.3 ** ***** Entropy 1.1 ** ***** (11.6 bits) 0.9 ** ***** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel TCACTTTC consensus G T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6153713-6153833 28 1.67e-05 TAGCAGCATC TCACTTTC CTCATTGTGG chr2R:23784758-23784878 21 1.67e-05 ACATGACATT TCACTTTC ATTTCCGAAG chrX:22857251-22857371 93 1.67e-05 GTTCTAGTTT TCACTTTC GAACAAATTT chrX:11724857-11724977 35 1.67e-05 cctttcactt tcactttc tctctctctc chr2L:8861579-8861699 67 1.67e-05 GCCAACGCTT TCACTTTC CTCCCGACCT chr2R:9969594-9969714 71 1.67e-05 GCACTCGGTT TCACTTTC GTTTCGCTGT chr2R:17635502-17635622 74 1.67e-05 AGCGGCGGAT TCACTTTC GTTTTCATCG chr3R:29719160-29719280 58 1.67e-05 CTTGGAACTT TCACTTTC GACGCCCAGT chr2R:8987014-8987134 19 1.67e-05 TTGTAGAATT TCACTTTC GTTATTGTTG chr2R:5880582-5880702 47 1.67e-05 AACATTAATT TCACTTTC TTCCGCACTC chr2L:8735137-8735257 54 1.67e-05 GACGCCGCTT TCACTTTC AACTGAAGAA chr3L:1755056-1755176 65 1.67e-05 CAGAGCGGTT TCACTTTC CGCCTTTTTC chr2R:6193021-6193141 12 1.67e-05 AGATAAAAAT TCACTTTC TACTCTTTCT chr3L:21647975-21648095 56 1.67e-05 CGCCAGAAAA TCACTTTC TCTCCGGCCC chr3L:22417906-22418026 57 1.67e-05 AAAGATATTT TCACTTTC GTTGGTCAGA chrX:22511692-22511812 89 1.67e-05 GACATGTTGT TCACTTTC TTTTTCACTT chr3L:6255380-6255500 34 1.67e-05 TAAATAAATT TCACTTTC TTTTGAATTT chrX:8893507-8893627 20 1.67e-05 GAGGCCTCTT TCACTTTC AAAAGCACTT chr2R:23443930-23444050 50 1.67e-05 GGAACGGCTT TCACTTTC TCCGGCGCTC chr2R:15739479-15739599 62 1.67e-05 TCGACCACTT TCACTTTC GCATTCGGTT chr2R:10069712-10069832 55 1.67e-05 TTAACACTTT TCACTTTC AATCTTGGGC chrX:16617461-16617581 37 1.67e-05 ACGGGTTTGT TCACtttc gatttcgatt chr3L:16656247-16656367 77 1.67e-05 GAATTAAGTT TCACTTTC AGCACTGCCC chr3R:20969572-20969692 89 1.67e-05 tctctctcta tcactttc tctctatatc chr3L:4269332-4269452 94 1.67e-05 CTGTCACATT TCACTTTC TTCGGGACTT chr3L:13027010-13027130 57 1.67e-05 ACTCGTTCAG TCACTTTC GCTGAAAAGT chr2L:13918505-13918625 81 1.67e-05 TTTCCCGCAT TCACTTTC CACTTGGCTG chrX:13146004-13146124 36 1.67e-05 CTTTCAACTC TCACTTTC GTCTGGCTAC chr3R:24714550-24714670 84 1.67e-05 GACGGACTTT TCACTTTC ATTCTATGGC chr3L:16433695-16433815 41 1.67e-05 CGATTAGCTA TCACTTTC TTCGGCGTTC chr3L:17938761-17938881 58 1.67e-05 CCAAAGAGTT TCACTTTC GCTGTCGGCC chrX:13192378-13192498 103 1.67e-05 CGGACTCTTT TCACTTTC GATTGCCGGA chr3L:3274911-3275031 37 1.67e-05 CTCTCTTGAC TCACTTTC GTTTTCAATG chrX:19163585-19163705 20 1.67e-05 AAATGGATTT TCACTTTC GGACCCAACG chr3L:13250192-13250312 78 1.67e-05 AGTTCACATT TCACTTTC GTTTCGAATT chr2R:7284644-7284764 20 1.67e-05 CTGGATGCTT TCACTTTC CATCTAATGC chr3R:16594181-16594301 50 1.67e-05 CGCTGTCTTT TCACTTTC GTTGGCTGCG chr2L:18518996-18519116 41 1.67e-05 TTGAAAAGTT TCACTTTC ATTTTTCCCT chr2L:7861868-7861988 30 1.67e-05 GTGGCACGAT TCACTTTC AATTTCAATG chrX:1304152-1304272 25 1.67e-05 GTGAATGTTT TCACTTTC GTTCGGCATC chr2L:11502862-11502982 93 1.67e-05 ataaaaagTT TCACTTTC TTCGAGAGCA chr3R:6102865-6102985 73 3.00e-05 CAGCATGCTT TCGCTTTC AATAGCAGTT chrX:5781900-5782020 80 3.00e-05 TCGACCGCTC TCGCTTTC TTTCGGGATC chr3L:2437710-2437830 38 3.00e-05 AGTCCTGGTT TCGCTTTC ATCGCAGCTG chr3L:21741169-21741289 32 3.00e-05 CACTCCGTTT TCGCTTTC AACTGGCTGG chr2R:16089765-16089885 43 3.00e-05 AGCTGGGATT TCGCTTTC GTTTGGAGAG chrX:1856757-1856877 4 3.00e-05 ATC TCGCTTTC GAGAGATGAC chr2L:4799597-4799717 74 5.05e-05 GCCGCGTTCG TCACTTTT ACTTTTCGCC chr3R:21067053-21067173 71 5.05e-05 GTGGAAACTT TCACTTTT CCCCGGCAGT chr3R:4127637-4127757 31 5.05e-05 CCCTAGCGCC TCACTTTT CCTTTCGCAA chrX:13819830-13819950 67 5.05e-05 AATTGAACTT TCACTTTT TCGCTGGGAA chrX:9647219-9647339 63 5.05e-05 GGCGCTACTT TCACTTTT GGCACGCGGG chr2R:14768388-14768508 46 5.05e-05 AAATCGAGAA TCACTTTT ACTTTTCCCC chr2R:8979701-8979821 59 5.05e-05 CAAGTTAATT TCACTTTT CCTAGACAAA chr2R:19812936-19813056 32 5.05e-05 TGGGGGAATT TCACTTTT CCTTTTTCCC chr2R:1649473-1649593 70 5.05e-05 AAAGCAACTC TCACTTTT AAACATAGTA chr2R:14319610-14319730 62 5.05e-05 GCAACAAATT TCACTTTT GTTTCTCCTC chr2R:18898290-18898410 59 5.05e-05 TTTTTCGGTT TCACTTTT CACCAGTCGA chr3R:9879425-9879545 26 5.05e-05 TTTCTCCAAC TCACTTTT TACTTTCATT chr3L:1212252-1212372 67 5.05e-05 ATGCTGCTTA TCACTTTT ACTTTTTGCT chr3L:7106531-7106651 30 6.68e-05 AATAAAACTT TCGCTTTT CCATTGTGTA chr3R:11608605-11608725 64 6.68e-05 CTTTCGCTTT TCGCTTTT AAATGCCTTT chr2R:18238879-18238999 58 6.68e-05 TGAGTCTAAA TCGCTTTT CTTCTTTTCG chr3L:16271035-16271155 29 6.68e-05 GATTTGTTTT TCGCTTTT CGTCACGCTT chr2L:14668539-14668659 2 6.68e-05 T TCGCTTTT CGATTTCAAA chrX:8882970-8883090 52 6.68e-05 CCGCAACTTG TCGCTTTT ACTTTTCTTC chr2L:18619338-18619458 42 6.68e-05 ATTTCCACTT TCGCTTTT CATTGTGTGT chr3L:21558611-21558731 95 6.68e-05 GGTACAACTT TCGCTTTT GTCGTCAATT chr2L:19944807-19944927 82 6.68e-05 TGCGATAGTT TCGCTTTT ATTCCACGTT chr3R:6227136-6227256 67 6.68e-05 GGGGTAACTT TCGCTTTT TCGGCTGACA chr3L:13381320-13381440 41 6.68e-05 CACACTGCTT TCGCTTTT TATAGCCCCT chr3L:16466656-16466776 38 8.74e-05 CAGTCGTGTG TTACTTTC AATTTCAATG chr2L:19783267-19783387 105 8.74e-05 TTATCGGCGT TTACTTTC TAATGGCA chr2L:13949928-13950048 84 8.74e-05 TAAACAACTT TTACTTTC TACGGAAAAT chr2R:8999686-8999806 72 8.74e-05 GCCATCAAAT TTACTTTC CGCTTTCTGC chr3R:31245927-31246047 40 8.74e-05 GGCTTTGGAC TTACTTTC CCTTTTTGTC chr3R:7159741-7159861 61 8.74e-05 TGCTTTACTT TTACTTTC ATATGCAACT chr3R:23307932-23308052 91 1.24e-04 CATTCCATTG TCATTTTC AAAACCAACA chr3L:18988189-18988309 24 1.24e-04 AAACAAGTTT TCTCTTTC TCGGCCAAAA chr2R:11943416-11943536 95 1.24e-04 ACTCTATCCA TCTCTTTC GGCTGGACTC chr3R:31327982-31328102 87 1.24e-04 TTTCTCCGAT TCTCTTTC TCTATTTGGC chr3L:14743430-14743550 35 1.24e-04 AAAACTACTT TCATTTTC TCTCTACACT chr2L:20368712-20368832 39 1.24e-04 GACAGCACTT TCATTTTC ACGCTCATCC chr2L:14687498-14687618 56 1.24e-04 TTTCGTATCG TCATTTTC TATCCCGAAT chr3L:21704263-21704383 15 1.40e-04 GTTAAGACTT TTGCTTTC CTTCCCCCGA chr2R:22900503-22900623 40 1.40e-04 GTGCTTGTGT TTGCTTTC CTTCAGTTGC chr3R:11661326-11661446 94 1.40e-04 GCGCCCACTT TTGCTTTC TTCCGCCGCT chr3L:2148813-2148933 64 1.40e-04 TCAACAACTT TTGCTTTC GTTGTTCGAG chrX:17255816-17255936 12 1.40e-04 ACATTGACTT TTGCTTTC TACTTTTCCT chr2R:20158739-20158859 65 1.91e-04 CTCGACCATT TCCCTTTC GATTTCAACA chr3R:31559020-31559140 105 1.91e-04 CCGACCACTT TCGTTTTC AATCGTAT chr3R:6240402-6240522 40 1.91e-04 CCTCGAGCTT TCGTTTTC ATTCCGCGAT chrX:10216773-10216893 9 1.91e-04 atGGGCTT TCGTTTTC ATTTCGATTT chrX:5297232-5297352 62 1.91e-04 CAAGACGTTT TCGTTTTC AATTGCAACT chr3L:4265950-4266070 11 1.91e-04 tattttgatt tcgttttc gttGTCTCGA chr3R:10154096-10154216 63 1.91e-04 CGGTCTGCTC TCCctttc tattatcggt chrX:2991071-2991191 38 1.91e-04 CGGCAAACTT TCAATTTC GAAACGCCAC chr3L:7821314-7821434 20 1.91e-04 GCCCGAAAAC TCAATTTC CCCTCGCCCC chr3R:24778357-24778477 41 1.91e-04 CGGGCGACTT TCGTTTTC TACCAGCCAA chr2L:11505038-11505158 102 2.34e-04 GCGGCGCAAT TTACTTTT ACTTGGGTAA chr3R:24712468-24712588 46 2.34e-04 CAATGGGAAA ACACTTTC GTTGCGATTA chr3L:3352692-3352812 55 2.34e-04 GTTTTCGGTT TTACTTTT CACcatttca chr3L:21301903-21302023 64 2.34e-04 CGGGTTATTA ACACTTTC GCTGCTTGGA chr3L:8772342-8772462 55 2.34e-04 TTTCTTTAAA ACACTTTC CTCTGCTCGA chr3L:9569333-9569453 51 2.34e-04 ACAGAAACTT TTACTTTT CCATAGGGCC chr3R:31477306-31477426 31 2.34e-04 CGTTGGTGTG ACACTTTC CATTTTATAG chrX:11759631-11759751 109 2.96e-04 CAATTTCTAT TCGATTTC GTTT chrX:3885970-3886090 30 2.96e-04 AATTAACAGT TCGATTTC GATGGACAAG chrX:1312665-1312785 54 2.96e-04 CCAAATGCTT TCGATTTC TATTTAAATA chrX:15170729-15170849 37 2.96e-04 TACGGGCATC TCTCTTTT TTTCCTCTTC chr3R:16543175-16543295 90 2.96e-04 Attcttattt tcattttt tttttttttt chr3R:31542054-31542174 103 2.96e-04 CCAAATTGAT TCATTTTT CGGTGTCCCT chr2R:5900636-5900756 51 2.96e-04 CCGACAACTT TCATTTTT TCCGCTGTAG chr3L:4309349-4309469 4 2.96e-04 GTT TCGATTTC ATTCAAAGTC chr2R:18913000-18913120 48 2.96e-04 AAGCGGCAGT TCGATTTC ATTAGGCCGC chr2R:11953609-11953729 70 2.96e-04 TCCCAGACTC TCGATTTC GAGTCCGACG chr2R:7311029-7311149 58 2.96e-04 TCTGCGGTTT TCGATTTC AGtttgcttt chr3R:6688323-6688443 1 3.09e-04 . TCACTCTC CCACGACCAT chr2L:7004308-7004428 16 3.09e-04 TCAATCAGAC TCACTCTC ATTGGGCTGA chr2R:24325453-24325573 44 3.09e-04 GCCAAAACTC TCACTCTC ACCTGGGAGT chr3R:6226313-6226433 78 3.43e-04 GTGAAAGTTA TTGCTTTT GGAGCACAGT chrX:18673039-18673159 12 4.19e-04 TCCAGAGCTT TCGTTTTT GTCGGCCAGC chrX:12002711-12002831 77 4.19e-04 TTAAATGGCT TCCCTTTT TGGGGGCTGC chr2R:18108899-18109019 113 4.19e-04 TTAAGTGAAG CCACTTTC chr3L:16704371-16704491 70 4.19e-04 tccccacctt tccctttt GTAGCCCCGC chr2L:10663144-10663264 34 4.51e-04 ATATAAATTT ACACTTTT CACTCCACGC chr2L:10781391-10781511 68 4.51e-04 AAAGTTTTTA ACACTTTT CATTTTAGAA chr3R:16666056-16666176 95 4.97e-04 AGAGCAACAA TTTCTTTC TTTTTGCCCC chr2R:7747630-7747750 23 4.97e-04 AACTTTCGGT TTTCTTTC GGGTTAAATT chr2R:8253914-8254034 71 4.97e-04 ACACTTGCAC TTTCTTTC AATTAGCCGC chr3L:5608925-5609045 67 4.97e-04 TAGCTCTCTA TTTCTTTC CGAACCCTCT chr3R:9217746-9217866 74 6.61e-04 TGGAAAAATT TCAGTTTC AGTAATCATA chr2R:23874228-23874348 109 6.99e-04 TTCACTGGCC CCACTTTT ACCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6153713-6153833 1.7e-05 27_[+1]_85 chr2R:23784758-23784878 1.7e-05 20_[+1]_92 chrX:22857251-22857371 1.7e-05 92_[+1]_20 chrX:11724857-11724977 1.7e-05 34_[+1]_78 chr2L:8861579-8861699 1.7e-05 66_[+1]_46 chr2R:9969594-9969714 1.7e-05 70_[+1]_42 chr2R:17635502-17635622 1.7e-05 73_[+1]_39 chr3R:29719160-29719280 1.7e-05 57_[+1]_55 chr2R:8987014-8987134 1.7e-05 18_[+1]_94 chr2R:5880582-5880702 1.7e-05 46_[+1]_66 chr2L:8735137-8735257 1.7e-05 53_[+1]_59 chr3L:1755056-1755176 1.7e-05 64_[+1]_48 chr2R:6193021-6193141 1.7e-05 11_[+1]_101 chr3L:21647975-21648095 1.7e-05 55_[+1]_57 chr3L:22417906-22418026 1.7e-05 56_[+1]_56 chrX:22511692-22511812 1.7e-05 88_[+1]_24 chr3L:6255380-6255500 1.7e-05 33_[+1]_79 chrX:8893507-8893627 1.7e-05 19_[+1]_93 chr2R:23443930-23444050 1.7e-05 49_[+1]_63 chr2R:15739479-15739599 1.7e-05 61_[+1]_51 chr2R:10069712-10069832 1.7e-05 54_[+1]_58 chrX:16617461-16617581 1.7e-05 36_[+1]_76 chr3L:16656247-16656367 1.7e-05 76_[+1]_36 chr3R:20969572-20969692 1.7e-05 88_[+1]_24 chr3L:4269332-4269452 1.7e-05 93_[+1]_19 chr3L:13027010-13027130 1.7e-05 56_[+1]_56 chr2L:13918505-13918625 1.7e-05 80_[+1]_32 chrX:13146004-13146124 1.7e-05 35_[+1]_77 chr3R:24714550-24714670 1.7e-05 83_[+1]_29 chr3L:16433695-16433815 1.7e-05 40_[+1]_72 chr3L:17938761-17938881 1.7e-05 57_[+1]_55 chrX:13192378-13192498 1.7e-05 102_[+1]_10 chr3L:3274911-3275031 1.7e-05 36_[+1]_76 chrX:19163585-19163705 1.7e-05 19_[+1]_93 chr3L:13250192-13250312 1.7e-05 77_[+1]_35 chr2R:7284644-7284764 1.7e-05 19_[+1]_93 chr3R:16594181-16594301 1.7e-05 49_[+1]_63 chr2L:18518996-18519116 1.7e-05 40_[+1]_72 chr2L:7861868-7861988 1.7e-05 29_[+1]_83 chrX:1304152-1304272 1.7e-05 24_[+1]_88 chr2L:11502862-11502982 1.7e-05 92_[+1]_20 chr3R:6102865-6102985 3e-05 72_[+1]_40 chrX:5781900-5782020 3e-05 79_[+1]_33 chr3L:2437710-2437830 3e-05 37_[+1]_75 chr3L:21741169-21741289 3e-05 31_[+1]_81 chr2R:16089765-16089885 3e-05 42_[+1]_70 chrX:1856757-1856877 3e-05 3_[+1]_109 chr2L:4799597-4799717 5.1e-05 73_[+1]_39 chr3R:21067053-21067173 5.1e-05 70_[+1]_42 chr3R:4127637-4127757 5.1e-05 30_[+1]_82 chrX:13819830-13819950 5.1e-05 66_[+1]_46 chrX:9647219-9647339 5.1e-05 62_[+1]_50 chr2R:14768388-14768508 5.1e-05 45_[+1]_67 chr2R:8979701-8979821 5.1e-05 58_[+1]_54 chr2R:19812936-19813056 5.1e-05 31_[+1]_81 chr2R:1649473-1649593 5.1e-05 69_[+1]_43 chr2R:14319610-14319730 5.1e-05 61_[+1]_51 chr2R:18898290-18898410 5.1e-05 58_[+1]_54 chr3R:9879425-9879545 5.1e-05 25_[+1]_87 chr3L:1212252-1212372 5.1e-05 66_[+1]_46 chr3L:7106531-7106651 6.7e-05 29_[+1]_83 chr3R:11608605-11608725 6.7e-05 63_[+1]_49 chr2R:18238879-18238999 6.7e-05 57_[+1]_55 chr3L:16271035-16271155 6.7e-05 28_[+1]_84 chr2L:14668539-14668659 6.7e-05 1_[+1]_111 chrX:8882970-8883090 6.7e-05 51_[+1]_61 chr2L:18619338-18619458 6.7e-05 41_[+1]_71 chr3L:21558611-21558731 6.7e-05 94_[+1]_18 chr2L:19944807-19944927 6.7e-05 81_[+1]_31 chr3R:6227136-6227256 6.7e-05 66_[+1]_46 chr3L:13381320-13381440 6.7e-05 40_[+1]_72 chr3L:16466656-16466776 8.7e-05 37_[+1]_75 chr2L:19783267-19783387 8.7e-05 104_[+1]_8 chr2L:13949928-13950048 8.7e-05 83_[+1]_29 chr2R:8999686-8999806 8.7e-05 71_[+1]_41 chr3R:31245927-31246047 8.7e-05 39_[+1]_73 chr3R:7159741-7159861 8.7e-05 60_[+1]_52 chr3R:23307932-23308052 0.00012 90_[+1]_22 chr3L:18988189-18988309 0.00012 23_[+1]_89 chr2R:11943416-11943536 0.00012 94_[+1]_18 chr3R:31327982-31328102 0.00012 86_[+1]_26 chr3L:14743430-14743550 0.00012 34_[+1]_78 chr2L:20368712-20368832 0.00012 38_[+1]_74 chr2L:14687498-14687618 0.00012 55_[+1]_57 chr3L:21704263-21704383 0.00014 14_[+1]_98 chr2R:22900503-22900623 0.00014 39_[+1]_73 chr3R:11661326-11661446 0.00014 93_[+1]_19 chr3L:2148813-2148933 0.00014 63_[+1]_49 chrX:17255816-17255936 0.00014 11_[+1]_101 chr2R:20158739-20158859 0.00019 64_[+1]_48 chr3R:31559020-31559140 0.00019 104_[+1]_8 chr3R:6240402-6240522 0.00019 39_[+1]_73 chrX:10216773-10216893 0.00019 8_[+1]_104 chrX:5297232-5297352 0.00019 61_[+1]_51 chr3L:4265950-4266070 0.00019 10_[+1]_102 chr3R:10154096-10154216 0.00019 62_[+1]_50 chrX:2991071-2991191 0.00019 37_[+1]_75 chr3L:7821314-7821434 0.00019 19_[+1]_93 chr3R:24778357-24778477 0.00019 40_[+1]_72 chr2L:11505038-11505158 0.00023 101_[+1]_11 chr3R:24712468-24712588 0.00023 45_[+1]_67 chr3L:3352692-3352812 0.00023 54_[+1]_58 chr3L:21301903-21302023 0.00023 63_[+1]_49 chr3L:8772342-8772462 0.00023 54_[+1]_58 chr3L:9569333-9569453 0.00023 50_[+1]_62 chr3R:31477306-31477426 0.00023 30_[+1]_82 chrX:11759631-11759751 0.0003 108_[+1]_4 chrX:3885970-3886090 0.0003 29_[+1]_83 chrX:1312665-1312785 0.0003 53_[+1]_59 chrX:15170729-15170849 0.0003 36_[+1]_76 chr3R:16543175-16543295 0.0003 89_[+1]_23 chr3R:31542054-31542174 0.0003 102_[+1]_10 chr2R:5900636-5900756 0.0003 50_[+1]_62 chr3L:4309349-4309469 0.0003 3_[+1]_109 chr2R:18913000-18913120 0.0003 47_[+1]_65 chr2R:11953609-11953729 0.0003 69_[+1]_43 chr2R:7311029-7311149 0.0003 57_[+1]_55 chr3R:6688323-6688443 0.00031 [+1]_112 chr2L:7004308-7004428 0.00031 15_[+1]_97 chr2R:24325453-24325573 0.00031 43_[+1]_69 chr3R:6226313-6226433 0.00034 77_[+1]_35 chrX:18673039-18673159 0.00042 11_[+1]_101 chrX:12002711-12002831 0.00042 76_[+1]_36 chr2R:18108899-18109019 0.00042 112_[+1] chr3L:16704371-16704491 0.00042 69_[+1]_43 chr2L:10663144-10663264 0.00045 33_[+1]_79 chr2L:10781391-10781511 0.00045 67_[+1]_45 chr3R:16666056-16666176 0.0005 94_[+1]_18 chr2R:7747630-7747750 0.0005 22_[+1]_90 chr2R:8253914-8254034 0.0005 70_[+1]_42 chr3L:5608925-5609045 0.0005 66_[+1]_46 chr3R:9217746-9217866 0.00066 73_[+1]_39 chr2R:23874228-23874348 0.0007 108_[+1]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TCACTTTC width=8 seqs=133 chr3R:6153713-6153833 ( 28) TCACTTTC 1 chr2R:23784758-23784878 ( 21) TCACTTTC 1 chrX:22857251-22857371 ( 93) TCACTTTC 1 chrX:11724857-11724977 ( 35) TCACTTTC 1 chr2L:8861579-8861699 ( 67) TCACTTTC 1 chr2R:9969594-9969714 ( 71) TCACTTTC 1 chr2R:17635502-17635622 ( 74) TCACTTTC 1 chr3R:29719160-29719280 ( 58) TCACTTTC 1 chr2R:8987014-8987134 ( 19) TCACTTTC 1 chr2R:5880582-5880702 ( 47) TCACTTTC 1 chr2L:8735137-8735257 ( 54) TCACTTTC 1 chr3L:1755056-1755176 ( 65) TCACTTTC 1 chr2R:6193021-6193141 ( 12) TCACTTTC 1 chr3L:21647975-21648095 ( 56) TCACTTTC 1 chr3L:22417906-22418026 ( 57) TCACTTTC 1 chrX:22511692-22511812 ( 89) TCACTTTC 1 chr3L:6255380-6255500 ( 34) TCACTTTC 1 chrX:8893507-8893627 ( 20) TCACTTTC 1 chr2R:23443930-23444050 ( 50) TCACTTTC 1 chr2R:15739479-15739599 ( 62) TCACTTTC 1 chr2R:10069712-10069832 ( 55) TCACTTTC 1 chrX:16617461-16617581 ( 37) TCACTTTC 1 chr3L:16656247-16656367 ( 77) TCACTTTC 1 chr3R:20969572-20969692 ( 89) TCACTTTC 1 chr3L:4269332-4269452 ( 94) TCACTTTC 1 chr3L:13027010-13027130 ( 57) TCACTTTC 1 chr2L:13918505-13918625 ( 81) TCACTTTC 1 chrX:13146004-13146124 ( 36) TCACTTTC 1 chr3R:24714550-24714670 ( 84) TCACTTTC 1 chr3L:16433695-16433815 ( 41) TCACTTTC 1 chr3L:17938761-17938881 ( 58) TCACTTTC 1 chrX:13192378-13192498 ( 103) TCACTTTC 1 chr3L:3274911-3275031 ( 37) TCACTTTC 1 chrX:19163585-19163705 ( 20) TCACTTTC 1 chr3L:13250192-13250312 ( 78) TCACTTTC 1 chr2R:7284644-7284764 ( 20) TCACTTTC 1 chr3R:16594181-16594301 ( 50) TCACTTTC 1 chr2L:18518996-18519116 ( 41) TCACTTTC 1 chr2L:7861868-7861988 ( 30) TCACTTTC 1 chrX:1304152-1304272 ( 25) TCACTTTC 1 chr2L:11502862-11502982 ( 93) TCACTTTC 1 chr3R:6102865-6102985 ( 73) TCGCTTTC 1 chrX:5781900-5782020 ( 80) TCGCTTTC 1 chr3L:2437710-2437830 ( 38) TCGCTTTC 1 chr3L:21741169-21741289 ( 32) TCGCTTTC 1 chr2R:16089765-16089885 ( 43) TCGCTTTC 1 chrX:1856757-1856877 ( 4) TCGCTTTC 1 chr2L:4799597-4799717 ( 74) TCACTTTT 1 chr3R:21067053-21067173 ( 71) TCACTTTT 1 chr3R:4127637-4127757 ( 31) TCACTTTT 1 chrX:13819830-13819950 ( 67) TCACTTTT 1 chrX:9647219-9647339 ( 63) TCACTTTT 1 chr2R:14768388-14768508 ( 46) TCACTTTT 1 chr2R:8979701-8979821 ( 59) TCACTTTT 1 chr2R:19812936-19813056 ( 32) TCACTTTT 1 chr2R:1649473-1649593 ( 70) TCACTTTT 1 chr2R:14319610-14319730 ( 62) TCACTTTT 1 chr2R:18898290-18898410 ( 59) TCACTTTT 1 chr3R:9879425-9879545 ( 26) TCACTTTT 1 chr3L:1212252-1212372 ( 67) TCACTTTT 1 chr3L:7106531-7106651 ( 30) TCGCTTTT 1 chr3R:11608605-11608725 ( 64) TCGCTTTT 1 chr2R:18238879-18238999 ( 58) TCGCTTTT 1 chr3L:16271035-16271155 ( 29) TCGCTTTT 1 chr2L:14668539-14668659 ( 2) TCGCTTTT 1 chrX:8882970-8883090 ( 52) TCGCTTTT 1 chr2L:18619338-18619458 ( 42) TCGCTTTT 1 chr3L:21558611-21558731 ( 95) TCGCTTTT 1 chr2L:19944807-19944927 ( 82) TCGCTTTT 1 chr3R:6227136-6227256 ( 67) TCGCTTTT 1 chr3L:13381320-13381440 ( 41) TCGCTTTT 1 chr3L:16466656-16466776 ( 38) TTACTTTC 1 chr2L:19783267-19783387 ( 105) TTACTTTC 1 chr2L:13949928-13950048 ( 84) TTACTTTC 1 chr2R:8999686-8999806 ( 72) TTACTTTC 1 chr3R:31245927-31246047 ( 40) TTACTTTC 1 chr3R:7159741-7159861 ( 61) TTACTTTC 1 chr3R:23307932-23308052 ( 91) TCATTTTC 1 chr3L:18988189-18988309 ( 24) TCTCTTTC 1 chr2R:11943416-11943536 ( 95) TCTCTTTC 1 chr3R:31327982-31328102 ( 87) TCTCTTTC 1 chr3L:14743430-14743550 ( 35) TCATTTTC 1 chr2L:20368712-20368832 ( 39) TCATTTTC 1 chr2L:14687498-14687618 ( 56) TCATTTTC 1 chr3L:21704263-21704383 ( 15) TTGCTTTC 1 chr2R:22900503-22900623 ( 40) TTGCTTTC 1 chr3R:11661326-11661446 ( 94) TTGCTTTC 1 chr3L:2148813-2148933 ( 64) TTGCTTTC 1 chrX:17255816-17255936 ( 12) TTGCTTTC 1 chr2R:20158739-20158859 ( 65) TCCCTTTC 1 chr3R:31559020-31559140 ( 105) TCGTTTTC 1 chr3R:6240402-6240522 ( 40) TCGTTTTC 1 chrX:10216773-10216893 ( 9) TCGTTTTC 1 chrX:5297232-5297352 ( 62) TCGTTTTC 1 chr3L:4265950-4266070 ( 11) TCGTTTTC 1 chr3R:10154096-10154216 ( 63) TCCCTTTC 1 chrX:2991071-2991191 ( 38) TCAATTTC 1 chr3L:7821314-7821434 ( 20) TCAATTTC 1 chr3R:24778357-24778477 ( 41) TCGTTTTC 1 chr2L:11505038-11505158 ( 102) TTACTTTT 1 chr3R:24712468-24712588 ( 46) ACACTTTC 1 chr3L:3352692-3352812 ( 55) TTACTTTT 1 chr3L:21301903-21302023 ( 64) ACACTTTC 1 chr3L:8772342-8772462 ( 55) ACACTTTC 1 chr3L:9569333-9569453 ( 51) TTACTTTT 1 chr3R:31477306-31477426 ( 31) ACACTTTC 1 chrX:11759631-11759751 ( 109) TCGATTTC 1 chrX:3885970-3886090 ( 30) TCGATTTC 1 chrX:1312665-1312785 ( 54) TCGATTTC 1 chrX:15170729-15170849 ( 37) TCTCTTTT 1 chr3R:16543175-16543295 ( 90) TCATTTTT 1 chr3R:31542054-31542174 ( 103) TCATTTTT 1 chr2R:5900636-5900756 ( 51) TCATTTTT 1 chr3L:4309349-4309469 ( 4) TCGATTTC 1 chr2R:18913000-18913120 ( 48) TCGATTTC 1 chr2R:11953609-11953729 ( 70) TCGATTTC 1 chr2R:7311029-7311149 ( 58) TCGATTTC 1 chr3R:6688323-6688443 ( 1) TCACTCTC 1 chr2L:7004308-7004428 ( 16) TCACTCTC 1 chr2R:24325453-24325573 ( 44) TCACTCTC 1 chr3R:6226313-6226433 ( 78) TTGCTTTT 1 chrX:18673039-18673159 ( 12) TCGTTTTT 1 chrX:12002711-12002831 ( 77) TCCCTTTT 1 chr2R:18108899-18109019 ( 113) CCACTTTC 1 chr3L:16704371-16704491 ( 70) TCCCTTTT 1 chr2L:10663144-10663264 ( 34) ACACTTTT 1 chr2L:10781391-10781511 ( 68) ACACTTTT 1 chr3R:16666056-16666176 ( 95) TTTCTTTC 1 chr2R:7747630-7747750 ( 23) TTTCTTTC 1 chr2R:8253914-8254034 ( 71) TTTCTTTC 1 chr3L:5608925-5609045 ( 67) TTTCTTTC 1 chr3R:9217746-9217866 ( 74) TCAGTTTC 1 chr2R:23874228-23874348 ( 109) CCACTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.07732 E= 3.6e-095 -265 -388 -1370 179 -1370 195 -1370 -93 116 -288 31 -218 -206 189 -489 -137 -1370 -1370 -1370 188 -1370 -329 -1370 185 -1370 -1370 -1370 188 -1370 169 -1370 7 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 133 E= 3.6e-095 0.045113 0.015038 0.000000 0.939850 0.000000 0.857143 0.000000 0.142857 0.631579 0.030075 0.278195 0.060150 0.067669 0.819549 0.007519 0.105263 0.000000 0.000000 0.000000 1.000000 0.000000 0.022556 0.000000 0.977444 0.000000 0.000000 0.000000 1.000000 0.000000 0.714286 0.000000 0.285714 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TCACTTTC MEME-1 regular expression -------------------------------------------------------------------------------- TC[AG]CTTT[CT] -------------------------------------------------------------------------------- Time 7.43 secs. ******************************************************************************** ******************************************************************************** MOTIF GAAAGTGA MEME-2 width = 8 sites = 158 llr = 1190 E-value = 9.0e-098 ******************************************************************************** -------------------------------------------------------------------------------- Motif GAAAGTGA MEME-2 Description -------------------------------------------------------------------------------- Simplified A 3aaa2128 pos.-specific C :::::2:1 probability G 7:::8:81 matrix T :::::71: bits 2.2 2.0 1.7 *** 1.5 **** Relative 1.3 ***** Entropy 1.1 ***** ** (10.9 bits) 0.9 ***** ** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GAAAGTGA consensus A C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGTGA MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:7086715-7086835 66 1.96e-05 GACAATTAGT GAAAGTGA AAAAtgtgtc chr3R:23307932-23308052 13 1.96e-05 ATTTCCAAAT GAAAGTGA AAACACCACT chr2R:18913833-18913953 76 1.96e-05 AGCGAAAGTT GAAAGTGA CATTTTTGGC chr3R:24216163-24216283 49 1.96e-05 CCGCCGCAGT GAAAGTGA AAGTTGAAAT chrX:15172010-15172130 2 1.96e-05 A GAAAGTGA AATTTTTGTC chr3L:21117599-21117719 74 1.96e-05 CAGCGAGAGG GAAAGTGA AAAACAGATA chr2R:22900503-22900623 3 1.96e-05 TC GAAAGTGA TGGTTTGTTT chr2R:23056004-23056124 66 1.96e-05 AGATTTCAGT GAAAGTGA TGAAGCGTCG chr3R:16543175-16543295 66 1.96e-05 CAGACGCGCG GAAAGTGA AATGAAAttc chr2L:3630905-3631025 64 1.96e-05 TGGGTCGCTG GAAAGTGA GAGTGCCCCA chr3R:24968154-24968274 25 1.96e-05 GCTAATGAAT GAAAGTGA AGTGAAAGTC chr3L:6785369-6785489 37 1.96e-05 CAAGCCGATT GAAAGTGA GAGGACAGCA chrX:17513399-17513519 113 1.96e-05 AGTCGTGAGC GAAAGTGA chr2R:17621724-17621844 91 1.96e-05 GCCCCAAAAA GAAAGTGA AATTTTCATC chr3R:21857203-21857323 97 1.96e-05 TCGAACAAAC GAAAGTGA AAACCGCAta chr3L:4302635-4302755 59 1.96e-05 CGGATGCTGT GAAAGTGA AATTTGTTCG chr2L:14169792-14169912 112 1.96e-05 GTCTCGCAGT GAAAGTGA T chr2R:14420766-14420886 85 1.96e-05 ACTTgaaagt gaaagtga acgagagaga chr3R:13913683-13913803 41 1.96e-05 GCATGAGATG GAAAGTGA AACCCATTTC chr2R:23873098-23873218 32 1.96e-05 AAGTTTTATT GAAAGTGA ACGTTTCGTT chrX:10089060-10089180 64 1.96e-05 aataaaaact gaaagtga aattgataag chr3L:16406883-16407003 72 1.96e-05 CAAATTCGGG GAAAGTGA AGATCGTGGA chr3L:3108999-3109119 2 1.96e-05 T GAAAGTGA AATTTCGTTG chr2L:19112334-19112454 79 1.96e-05 CGCGGTGGGT GAAAGTGA ATCCAAGAAC chr3R:24202850-24202970 63 1.96e-05 Tatcgaaaaa gaaagtga aattcaaatt chr3L:516683-516803 81 1.96e-05 AAATGCAATA GAAAGTGA AATGCGTTGG chr3R:6245107-6245227 40 1.96e-05 CACGGAAAGT GAAAGTGA TGAGGCCGAT chrX:17181371-17181491 55 1.96e-05 gacagtgagt gaaagtga cagtgaACTC chrX:14894011-14894131 89 1.96e-05 atggaatTCT GAAAGTGA AACTTTAAGC chr2R:24259504-24259624 79 1.96e-05 AATTTCTAAA GAAAGTGA AAGTTTGTCG chr3R:23785427-23785547 66 1.96e-05 TCCGATCAGG GAAAGTGA GCGGGGAAGC chrX:2363863-2363983 55 1.96e-05 AAAATCGAAC GAAAGTGA GAGGAGCGCG chrX:17255816-17255936 49 1.96e-05 TCACACACAC GAAAGTGA AAACTTGCCG chr3L:7821314-7821434 53 1.96e-05 CAAGCGAAAT GAAAGTGA GAGTGCTGGA chr3R:4961037-4961157 77 1.96e-05 CTTTACGAGC GAAAGTGA AAAAGTCGGG chr3R:10149812-10149932 72 1.96e-05 CTGGCCAAAC GAAAGTGA AAGCCCATAC chrX:1856757-1856877 77 1.96e-05 CTATAAAAAC GAAAGTGA AGCTTACAGT chr3R:13816860-13816980 98 3.55e-05 ACCACAAATA GAAAGCGA CAGTGGAAGT chr3L:3108355-3108475 92 3.55e-05 GCGTTCCTAT GAAAGCGA AAGTCCCCAC chr3R:12666345-12666465 67 3.55e-05 AGAAACCGTT GAAAGCGA AAATGAAAAG chr3R:31542054-31542174 34 3.55e-05 CAGCTTCGTT GAAAGCGA AAGGTCTCCC chrX:5783397-5783517 33 3.55e-05 CGGAGTCGAT GAAAGCGA GAGTGGGCAG chr3L:3105988-3106108 66 3.55e-05 TTTCAGCTAC GAAAGCGA AACTGAAACC chrX:5787003-5787123 65 3.55e-05 AAGAAAATTC GAAAGCGA AAGTCAAAGT chr2L:14687498-14687618 103 3.55e-05 AGTGAAACGA GAAAGCGA GAGTTTTCCT chr3R:7147113-7147233 47 6.03e-05 CTTGTAGCTT AAAAGTGA AAGCAATTTG chr2R:7744467-7744587 48 6.03e-05 GGTCTCAAAT AAAAGTGA AAATCGTTGT chrX:11759631-11759751 39 6.03e-05 tttccaCAAG AAAAGTGA AAACTGGAGG chr3R:16666056-16666176 71 6.03e-05 TCTGACAGAA AAAAGTGA AAGTTAAGAG chrX:15170729-15170849 10 6.03e-05 TTACTTAAT AAAAGTGA AATTATACTT chrX:4662352-4662472 57 6.03e-05 ATTCGAAATC AAAAGTGA ATCCAGTTCG chr3R:8946543-8946663 43 6.03e-05 CTGGGATTTG AAAAGTGA AATTTCAAAG chrX:12501572-12501692 73 6.03e-05 tttttCAATG AAAAGTGA ATGTGAATGC chr3R:27035906-27036026 67 6.03e-05 TTTATTCTAT AAAAGTGA AAGGTTCGGA chr2R:18913000-18913120 112 6.03e-05 TTTCGAAAGC AAAAGTGA A chr2L:1665546-1665666 100 6.03e-05 aaaaaccgaa aaaagtga aatgaaatca chr2R:18925871-18925991 64 6.03e-05 TATGTGAAAA AAAAGTGA AAATGATGAC chr3L:21558611-21558731 45 6.03e-05 TACCTCATGT AAAAGTGA AAATGTTTTT chr3R:23734710-23734830 77 6.03e-05 TATTAAAAGC AAAAGTGA AAAATGCCAC chr3L:13169419-13169539 102 6.03e-05 AAAGCGAAAG AAAAGTGA GAGTCTCTCG chr2R:7295339-7295459 37 6.03e-05 TGGGCATGTG AAAAGTGA AACCCCAATG chr3R:8970846-8970966 87 6.03e-05 AGCCGAGAGT AAAAGTGA AAGAGGCGGA chrX:11757031-11757151 101 6.03e-05 AAACGGTTAG AAAAGTGA GAGTGCTGAT chr3L:5608925-5609045 38 6.03e-05 ACTGCCGAAA AAAAGTGA AGCTACCGTT chrX:17586050-17586170 41 1.00e-04 GCAATTAGCC GAAAGTAA AAGTGGGCTG chr3R:12360031-12360151 62 1.00e-04 CGAGCCCGCA GAAAGTGC CAGTGAATAG chr3L:8294729-8294849 77 1.00e-04 TTCGACGGAG GAAAGTGC AAGTGTCCAC chrX:14173560-14173680 107 1.00e-04 TGGGTTTTTA GAAAGTGC GAGTGG chr3L:4304378-4304498 48 1.00e-04 CCAGCCCAAC GAAAGTAA AAACTCAAGG chr2L:14207273-14207393 58 1.00e-04 AACAAAAATG GAAAGTAA ATGAGTCGGG chr3R:31528778-31528898 33 1.00e-04 TTCGTTAACT GAAAGTAA AAGAAACGAA chr2L:19783267-19783387 56 1.00e-04 TCATTTGGCT GAAAGTGC CCAAAAGCTA chr3R:6237843-6237963 100 1.00e-04 CAGAAAAAGG GAAAGTGC ATGGCGCCTT chr2R:7985826-7985946 41 1.00e-04 TGTAGATAGT GAAAGTGC CTGTGCATCA chr3R:4811273-4811393 65 1.00e-04 AAATAAAAGA GAAAGTAA AACTAAACAA chr3L:14429097-14429217 57 1.00e-04 GGGAAAAACT GAAAGTGC GTTGAAAACT chr3L:13381320-13381440 67 1.00e-04 CTCCAAAAAT GAAAGTAA ATGCGAGCAA chr3L:16340023-16340143 78 1.00e-04 GACCTCCAAT GAAAGTAA AAGTCTTATA chr2L:10781391-10781511 51 1.00e-04 AGCTCGGATT GAAAGTAA AAGTTTTTAA chr2R:16796492-16796612 34 1.41e-04 TGACTTCGTT GAAAATGA GAGTTAAAAG chr2R:13926936-13927056 40 1.41e-04 TATGAAAATG GAAAGTGG AATTGCATAC chr2L:14641539-14641659 83 1.41e-04 AAACAAAAAT GAAAGTGG CCCTCGATTT chr3L:17960386-17960506 49 1.41e-04 AAACGAAATG GAAAATGA AGTCTGCGCA chr3R:28684944-28685064 41 1.41e-04 GCCAGTCGAA GAAAATGA AAACTGGCCA chrX:1100483-1100603 52 1.41e-04 gaaatgaaat gaaaatga aaGTTTCAAT chr2L:13918505-13918625 26 1.41e-04 TTGTGgaaaa gaaaatga aatgaaactg chr2R:6968686-6968806 19 1.41e-04 CCCGAAAATC GAAAGTGG TTACGAAAGA chrX:11842118-11842238 90 1.41e-04 AAAGCCAAAT GAAAATGA AACCACAAAA chr3L:16546298-16546418 101 1.41e-04 tagacaaaat gaaaatga aaCTGAATCA chr2R:9013620-9013740 78 1.41e-04 CATTGAAAAC GAAAGTGG CCAAGGCAAC chr2L:10515954-10516074 80 1.61e-04 AATGGTAAAT AAAAGCGA GTTTTGTTTT chr3L:21291220-21291340 61 1.61e-04 TGCCGCATCG AAAAGCGA AAGTCGTTCT chrX:2279958-2280078 26 1.61e-04 aaacgaaaac aaaagcga ggaacgagga chr2R:8979701-8979821 74 1.61e-04 TTTCCTAGAC AAAAGCGA AGAAAAACTG chrX:17715080-17715200 19 1.81e-04 CAGGAAGAAG GAAAGAGA CGGCCAGCTG chr2R:15739479-15739599 13 1.81e-04 ATGGGAAGGC GAAAGAGA GAGAGAGATC chr2R:23874228-23874348 12 1.81e-04 CACAGAGGGA GAAAGAGA GGGCGACACA chr2L:11502862-11502982 52 1.81e-04 AAAagagaca gaaagaga gagagagaga chr2R:18238879-18238999 34 1.97e-04 GGGCCGAGAA GAAAGGGA GAGTTCTGAG chr2R:5880582-5880702 106 1.97e-04 AATGCCGCAG GAAAGGGA CGGGGAA chr3L:5599781-5599901 54 1.97e-04 ACCCACCATC GAAAGGGA AATGCTAAGC chr3L:21704263-21704383 1 2.54e-04 . GAAAGTTA AGACTTTTGC chr3R:6226313-6226433 70 2.54e-04 CATTGAGAGT GAAAGTTA TTGCTTTTGG chrX:1312665-1312785 14 2.54e-04 GGGGAAAGAA GAAAGCGC GGGGACCAAA chr2L:8735137-8735257 109 2.54e-04 AACTCATATA GAAAGCAA CAAA chr3L:6268490-6268610 41 2.54e-04 AATCGAAATC GAAAGTTA CTGGCCTATC chr3R:31483199-31483319 76 2.54e-04 AGTTCAGAAA GAAAGTTA ATGGCTTGGG chr2R:16020753-16020873 74 2.54e-04 TGGTTTTAAC GAAAGCAA AAGTCATCTT chr3L:4296928-4297048 63 2.54e-04 CACGAAAACC GAAAGTTA AATCCAGCAC chrX:5297232-5297352 18 2.54e-04 TGGCTCGATA GAAAGCAA AAGTTGAAAT chr3R:4475519-4475639 32 2.54e-04 ATATTGAAAC GAAAGCGC AAGTGAATCG chr3R:24524554-24524674 64 2.54e-04 CGGCGAGCCG GAAAGCAA AAGTGGTTCG chr3R:9879425-9879545 74 2.54e-04 AAAAGAAACA GAAAGCAA ATATATTTAA chr3L:13250192-13250312 52 2.54e-04 CGCATAAAAC GAAAGCAA ATGTGGGCAG chr3R:19033544-19033664 110 3.37e-04 GAGAGAAAAG AAAAGTGC GAG chrX:12002711-12002831 56 3.37e-04 TTGAAAAAGT AAAAGTAA ACTTTAAATG chr3L:18988189-18988309 83 3.37e-04 aatcgaaatt gaaaacga aaACTAAGAG chr2R:24585599-24585719 67 3.37e-04 GGACCTGAGT AAAAGTAA AAGCTGAGCC chr3L:16271035-16271155 68 3.37e-04 AAACGAAACC AAAAGTGC AAAGCCATAA chrX:10216773-10216893 52 3.37e-04 GGACGCACCC AAAAGTGC CAATCGTCGT chr2L:7004308-7004428 87 3.37e-04 AAAGCATGAG GAAAACGA GAAACACTCA chr3R:15436337-15436457 40 3.37e-04 TGTTTCTACT GAAAACGA AAACGCATTT chr2R:17397319-17397439 65 3.37e-04 GCGAACAAAC GAAAACGA AAGCCCCAAT chrX:8893507-8893627 75 3.37e-04 CGCGAAGAAG AAAAGTAA AAGCCCACGC chr3R:11661326-11661446 57 3.37e-04 AGCGAAAAGT AAAAGTGC TTCGGCGGCT chrX:17204301-17204421 34 3.37e-04 GCCTCTGAAT GAAAACGA GAGTTGAGTG chr3L:4533359-4533479 83 3.37e-04 CGAAAGAAAC GAAAACGA AAGTCGGTCC chr3R:6097165-6097285 67 3.37e-04 CAAGTCGAAC GAAAACGA AAGCCAAGAG chr2R:11953609-11953729 45 3.37e-04 GAATGAAATC AAAAGTGC TTCCAACTCC chr3R:21067053-21067173 57 3.88e-04 CTGCGTACTG AAAAGTGG AAACTTTCAC chr3R:9217746-9217866 38 3.88e-04 AAGTCTATGC AAAAATGA AAGAACCCAA chr3R:21094431-21094551 76 4.04e-04 AACGGAGAGT GAGAGTGA CAAAAACCGA chrX:22512221-22512341 33 4.04e-04 AAACCCAATG GAGAGTGA AAGCAGCCGG chrX:12453862-12453982 88 4.04e-04 GTGGAACAGT GAGAGTGA TCAGCGGTCA chr2L:18619338-18619458 69 4.93e-04 TGTGAAAATG GAAAATAA AGGAAAGGCA chr3L:7106531-7106651 57 5.13e-04 AAATAAGCGT GAAAATGG CCCATTAGCG chrX:19163585-19163705 8 5.13e-04 GCCAGTG GAAAATGG ATTTTCACTT chrX:8258737-8258857 45 5.39e-04 CTGTGAGTGC AAAAGAGA GAAAAGAACT chr2L:14179530-14179650 87 5.78e-04 TATTTTTGTG AAAAGGGA AAGTTCATTG chrX:8882970-8883090 27 6.50e-04 AAAGGGGGAA AAAAGCGC ACTCCTCCCG chr2R:1649473-1649593 59 6.50e-04 TGATAAACAG AAAAGCAA CTCTCACTTT chrX:9224562-9224682 72 6.50e-04 TAATGAAAAC AAAAGTTA AAACAAATAA chr3R:6102865-6102985 3 6.91e-04 GC AAAAGCGG CACAGCGGTC chr3R:6688323-6688443 35 7.33e-04 GGTCGTCGCT GAAAGAAA GAACGCGTGT chr2L:10663144-10663264 56 7.33e-04 CCACGCCGCC GAAAGAAA GTTCCCGTTC chr2L:11505038-11505158 34 8.20e-04 AAGGAAAGTT GAAAGGGC TCCAGGGCGC chr3L:4269332-4269452 26 8.20e-04 CCTCACCTGT GAAAAAGA TAAATAAAAT chr2R:16089765-16089885 67 9.07e-04 AGAGAGAAGA GAAAGGGG ATGCGTCGAT chr2R:24758129-24758249 73 9.07e-04 GAACTTCAGG GAAAGTTC CCTCGAACAA chr2L:4801855-4801975 59 1.04e-03 AGACGCAAAC GAAAACAA AAGTCAATTG chr2L:14668539-14668659 108 1.04e-03 GCAATGAAGT GAAAGTTG TTTCA chr3L:17488729-17488849 44 1.04e-03 TTGATGTGGG GAAAACAA AAACAGAAAC chr3R:24773183-24773303 45 1.04e-03 TCTTCTAATT GAAAGCAG TTCGATGGCG chr2R:10069712-10069832 111 1.14e-03 AACCTTCTTC AAAAGTAG AA chr3R:6316950-6317070 24 1.17e-03 GCACGTCCAA AAAAATGG CTCTGCCACT chr2R:7747630-7747750 81 1.17e-03 aaaaaaaaga aaaaaTGG GTAACCTAGT chr3L:21301903-21302023 11 1.26e-03 AAAGAGTCTA GAGAATGA TGTAACAGAC chr3R:11608605-11608725 109 1.53e-03 TGGGATAAAA AAAAAAGA CCCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGTGA MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:7086715-7086835 2e-05 65_[+2]_47 chr3R:23307932-23308052 2e-05 12_[+2]_100 chr2R:18913833-18913953 2e-05 75_[+2]_37 chr3R:24216163-24216283 2e-05 48_[+2]_64 chrX:15172010-15172130 2e-05 1_[+2]_111 chr3L:21117599-21117719 2e-05 73_[+2]_39 chr2R:22900503-22900623 2e-05 2_[+2]_110 chr2R:23056004-23056124 2e-05 65_[+2]_47 chr3R:16543175-16543295 2e-05 65_[+2]_47 chr2L:3630905-3631025 2e-05 63_[+2]_49 chr3R:24968154-24968274 2e-05 24_[+2]_88 chr3L:6785369-6785489 2e-05 36_[+2]_76 chrX:17513399-17513519 2e-05 112_[+2] chr2R:17621724-17621844 2e-05 90_[+2]_22 chr3R:21857203-21857323 2e-05 96_[+2]_16 chr3L:4302635-4302755 2e-05 58_[+2]_54 chr2L:14169792-14169912 2e-05 111_[+2]_1 chr2R:14420766-14420886 2e-05 84_[+2]_28 chr3R:13913683-13913803 2e-05 40_[+2]_72 chr2R:23873098-23873218 2e-05 31_[+2]_81 chrX:10089060-10089180 2e-05 63_[+2]_49 chr3L:16406883-16407003 2e-05 71_[+2]_41 chr3L:3108999-3109119 2e-05 1_[+2]_111 chr2L:19112334-19112454 2e-05 78_[+2]_34 chr3R:24202850-24202970 2e-05 62_[+2]_50 chr3L:516683-516803 2e-05 80_[+2]_32 chr3R:6245107-6245227 2e-05 39_[+2]_73 chrX:17181371-17181491 2e-05 54_[+2]_58 chrX:14894011-14894131 2e-05 88_[+2]_24 chr2R:24259504-24259624 2e-05 78_[+2]_34 chr3R:23785427-23785547 2e-05 65_[+2]_47 chrX:2363863-2363983 2e-05 54_[+2]_58 chrX:17255816-17255936 2e-05 48_[+2]_64 chr3L:7821314-7821434 2e-05 52_[+2]_60 chr3R:4961037-4961157 2e-05 76_[+2]_36 chr3R:10149812-10149932 2e-05 71_[+2]_41 chrX:1856757-1856877 2e-05 76_[+2]_36 chr3R:13816860-13816980 3.6e-05 97_[+2]_15 chr3L:3108355-3108475 3.6e-05 91_[+2]_21 chr3R:12666345-12666465 3.6e-05 66_[+2]_46 chr3R:31542054-31542174 3.6e-05 33_[+2]_79 chrX:5783397-5783517 3.6e-05 32_[+2]_80 chr3L:3105988-3106108 3.6e-05 65_[+2]_47 chrX:5787003-5787123 3.6e-05 64_[+2]_48 chr2L:14687498-14687618 3.6e-05 102_[+2]_10 chr3R:7147113-7147233 6e-05 46_[+2]_66 chr2R:7744467-7744587 6e-05 47_[+2]_65 chrX:11759631-11759751 6e-05 38_[+2]_74 chr3R:16666056-16666176 6e-05 70_[+2]_42 chrX:15170729-15170849 6e-05 9_[+2]_103 chrX:4662352-4662472 6e-05 56_[+2]_56 chr3R:8946543-8946663 6e-05 42_[+2]_70 chrX:12501572-12501692 6e-05 72_[+2]_40 chr3R:27035906-27036026 6e-05 66_[+2]_46 chr2R:18913000-18913120 6e-05 111_[+2]_1 chr2L:1665546-1665666 6e-05 99_[+2]_13 chr2R:18925871-18925991 6e-05 63_[+2]_49 chr3L:21558611-21558731 6e-05 44_[+2]_68 chr3R:23734710-23734830 6e-05 76_[+2]_36 chr3L:13169419-13169539 6e-05 101_[+2]_11 chr2R:7295339-7295459 6e-05 36_[+2]_76 chr3R:8970846-8970966 6e-05 86_[+2]_26 chrX:11757031-11757151 6e-05 100_[+2]_12 chr3L:5608925-5609045 6e-05 37_[+2]_75 chrX:17586050-17586170 0.0001 40_[+2]_72 chr3R:12360031-12360151 0.0001 61_[+2]_51 chr3L:8294729-8294849 0.0001 76_[+2]_36 chrX:14173560-14173680 0.0001 106_[+2]_6 chr3L:4304378-4304498 0.0001 47_[+2]_65 chr2L:14207273-14207393 0.0001 57_[+2]_55 chr3R:31528778-31528898 0.0001 32_[+2]_80 chr2L:19783267-19783387 0.0001 55_[+2]_57 chr3R:6237843-6237963 0.0001 99_[+2]_13 chr2R:7985826-7985946 0.0001 40_[+2]_72 chr3R:4811273-4811393 0.0001 64_[+2]_48 chr3L:14429097-14429217 0.0001 56_[+2]_56 chr3L:13381320-13381440 0.0001 66_[+2]_46 chr3L:16340023-16340143 0.0001 77_[+2]_35 chr2L:10781391-10781511 0.0001 50_[+2]_62 chr2R:16796492-16796612 0.00014 33_[+2]_79 chr2R:13926936-13927056 0.00014 39_[+2]_73 chr2L:14641539-14641659 0.00014 82_[+2]_30 chr3L:17960386-17960506 0.00014 48_[+2]_64 chr3R:28684944-28685064 0.00014 40_[+2]_72 chrX:1100483-1100603 0.00014 51_[+2]_61 chr2L:13918505-13918625 0.00014 25_[+2]_87 chr2R:6968686-6968806 0.00014 18_[+2]_94 chrX:11842118-11842238 0.00014 89_[+2]_23 chr3L:16546298-16546418 0.00014 100_[+2]_12 chr2R:9013620-9013740 0.00014 77_[+2]_35 chr2L:10515954-10516074 0.00016 79_[+2]_33 chr3L:21291220-21291340 0.00016 60_[+2]_52 chrX:2279958-2280078 0.00016 25_[+2]_87 chr2R:8979701-8979821 0.00016 73_[+2]_39 chrX:17715080-17715200 0.00018 18_[+2]_94 chr2R:15739479-15739599 0.00018 12_[+2]_100 chr2R:23874228-23874348 0.00018 11_[+2]_101 chr2L:11502862-11502982 0.00018 51_[+2]_61 chr2R:18238879-18238999 0.0002 33_[+2]_79 chr2R:5880582-5880702 0.0002 105_[+2]_7 chr3L:5599781-5599901 0.0002 53_[+2]_59 chr3L:21704263-21704383 0.00025 [+2]_112 chr3R:6226313-6226433 0.00025 69_[+2]_43 chrX:1312665-1312785 0.00025 13_[+2]_99 chr2L:8735137-8735257 0.00025 108_[+2]_4 chr3L:6268490-6268610 0.00025 40_[+2]_72 chr3R:31483199-31483319 0.00025 75_[+2]_37 chr2R:16020753-16020873 0.00025 73_[+2]_39 chr3L:4296928-4297048 0.00025 62_[+2]_50 chrX:5297232-5297352 0.00025 17_[+2]_95 chr3R:4475519-4475639 0.00025 31_[+2]_81 chr3R:24524554-24524674 0.00025 63_[+2]_49 chr3R:9879425-9879545 0.00025 73_[+2]_39 chr3L:13250192-13250312 0.00025 51_[+2]_61 chr3R:19033544-19033664 0.00034 109_[+2]_3 chrX:12002711-12002831 0.00034 55_[+2]_57 chr3L:18988189-18988309 0.00034 82_[+2]_30 chr2R:24585599-24585719 0.00034 66_[+2]_46 chr3L:16271035-16271155 0.00034 67_[+2]_45 chrX:10216773-10216893 0.00034 51_[+2]_61 chr2L:7004308-7004428 0.00034 86_[+2]_26 chr3R:15436337-15436457 0.00034 39_[+2]_73 chr2R:17397319-17397439 0.00034 64_[+2]_48 chrX:8893507-8893627 0.00034 74_[+2]_38 chr3R:11661326-11661446 0.00034 56_[+2]_56 chrX:17204301-17204421 0.00034 33_[+2]_79 chr3L:4533359-4533479 0.00034 82_[+2]_30 chr3R:6097165-6097285 0.00034 66_[+2]_46 chr2R:11953609-11953729 0.00034 44_[+2]_68 chr3R:21067053-21067173 0.00039 56_[+2]_56 chr3R:9217746-9217866 0.00039 37_[+2]_75 chr3R:21094431-21094551 0.0004 75_[+2]_37 chrX:22512221-22512341 0.0004 32_[+2]_80 chrX:12453862-12453982 0.0004 87_[+2]_25 chr2L:18619338-18619458 0.00049 68_[+2]_44 chr3L:7106531-7106651 0.00051 56_[+2]_56 chrX:19163585-19163705 0.00051 7_[+2]_105 chrX:8258737-8258857 0.00054 44_[+2]_68 chr2L:14179530-14179650 0.00058 86_[+2]_26 chrX:8882970-8883090 0.00065 26_[+2]_86 chr2R:1649473-1649593 0.00065 58_[+2]_54 chrX:9224562-9224682 0.00065 71_[+2]_41 chr3R:6102865-6102985 0.00069 2_[+2]_110 chr3R:6688323-6688443 0.00073 34_[+2]_78 chr2L:10663144-10663264 0.00073 55_[+2]_57 chr2L:11505038-11505158 0.00082 33_[+2]_79 chr3L:4269332-4269452 0.00082 25_[+2]_87 chr2R:16089765-16089885 0.00091 66_[+2]_46 chr2R:24758129-24758249 0.00091 72_[+2]_40 chr2L:4801855-4801975 0.001 58_[+2]_54 chr2L:14668539-14668659 0.001 107_[+2]_5 chr3L:17488729-17488849 0.001 43_[+2]_69 chr3R:24773183-24773303 0.001 44_[+2]_68 chr2R:10069712-10069832 0.0011 110_[+2]_2 chr3R:6316950-6317070 0.0012 23_[+2]_89 chr2R:7747630-7747750 0.0012 80_[+2]_32 chr3L:21301903-21302023 0.0013 10_[+2]_102 chr3R:11608605-11608725 0.0015 108_[+2]_4 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGTGA MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GAAAGTGA width=8 seqs=158 chr2L:7086715-7086835 ( 66) GAAAGTGA 1 chr3R:23307932-23308052 ( 13) GAAAGTGA 1 chr2R:18913833-18913953 ( 76) GAAAGTGA 1 chr3R:24216163-24216283 ( 49) GAAAGTGA 1 chrX:15172010-15172130 ( 2) GAAAGTGA 1 chr3L:21117599-21117719 ( 74) GAAAGTGA 1 chr2R:22900503-22900623 ( 3) GAAAGTGA 1 chr2R:23056004-23056124 ( 66) GAAAGTGA 1 chr3R:16543175-16543295 ( 66) GAAAGTGA 1 chr2L:3630905-3631025 ( 64) GAAAGTGA 1 chr3R:24968154-24968274 ( 25) GAAAGTGA 1 chr3L:6785369-6785489 ( 37) GAAAGTGA 1 chrX:17513399-17513519 ( 113) GAAAGTGA 1 chr2R:17621724-17621844 ( 91) GAAAGTGA 1 chr3R:21857203-21857323 ( 97) GAAAGTGA 1 chr3L:4302635-4302755 ( 59) GAAAGTGA 1 chr2L:14169792-14169912 ( 112) GAAAGTGA 1 chr2R:14420766-14420886 ( 85) GAAAGTGA 1 chr3R:13913683-13913803 ( 41) GAAAGTGA 1 chr2R:23873098-23873218 ( 32) GAAAGTGA 1 chrX:10089060-10089180 ( 64) GAAAGTGA 1 chr3L:16406883-16407003 ( 72) GAAAGTGA 1 chr3L:3108999-3109119 ( 2) GAAAGTGA 1 chr2L:19112334-19112454 ( 79) GAAAGTGA 1 chr3R:24202850-24202970 ( 63) GAAAGTGA 1 chr3L:516683-516803 ( 81) GAAAGTGA 1 chr3R:6245107-6245227 ( 40) GAAAGTGA 1 chrX:17181371-17181491 ( 55) GAAAGTGA 1 chrX:14894011-14894131 ( 89) GAAAGTGA 1 chr2R:24259504-24259624 ( 79) GAAAGTGA 1 chr3R:23785427-23785547 ( 66) GAAAGTGA 1 chrX:2363863-2363983 ( 55) GAAAGTGA 1 chrX:17255816-17255936 ( 49) GAAAGTGA 1 chr3L:7821314-7821434 ( 53) GAAAGTGA 1 chr3R:4961037-4961157 ( 77) GAAAGTGA 1 chr3R:10149812-10149932 ( 72) GAAAGTGA 1 chrX:1856757-1856877 ( 77) GAAAGTGA 1 chr3R:13816860-13816980 ( 98) GAAAGCGA 1 chr3L:3108355-3108475 ( 92) GAAAGCGA 1 chr3R:12666345-12666465 ( 67) GAAAGCGA 1 chr3R:31542054-31542174 ( 34) GAAAGCGA 1 chrX:5783397-5783517 ( 33) GAAAGCGA 1 chr3L:3105988-3106108 ( 66) GAAAGCGA 1 chrX:5787003-5787123 ( 65) GAAAGCGA 1 chr2L:14687498-14687618 ( 103) GAAAGCGA 1 chr3R:7147113-7147233 ( 47) AAAAGTGA 1 chr2R:7744467-7744587 ( 48) AAAAGTGA 1 chrX:11759631-11759751 ( 39) AAAAGTGA 1 chr3R:16666056-16666176 ( 71) AAAAGTGA 1 chrX:15170729-15170849 ( 10) AAAAGTGA 1 chrX:4662352-4662472 ( 57) AAAAGTGA 1 chr3R:8946543-8946663 ( 43) AAAAGTGA 1 chrX:12501572-12501692 ( 73) AAAAGTGA 1 chr3R:27035906-27036026 ( 67) AAAAGTGA 1 chr2R:18913000-18913120 ( 112) AAAAGTGA 1 chr2L:1665546-1665666 ( 100) AAAAGTGA 1 chr2R:18925871-18925991 ( 64) AAAAGTGA 1 chr3L:21558611-21558731 ( 45) AAAAGTGA 1 chr3R:23734710-23734830 ( 77) AAAAGTGA 1 chr3L:13169419-13169539 ( 102) AAAAGTGA 1 chr2R:7295339-7295459 ( 37) AAAAGTGA 1 chr3R:8970846-8970966 ( 87) AAAAGTGA 1 chrX:11757031-11757151 ( 101) AAAAGTGA 1 chr3L:5608925-5609045 ( 38) AAAAGTGA 1 chrX:17586050-17586170 ( 41) GAAAGTAA 1 chr3R:12360031-12360151 ( 62) GAAAGTGC 1 chr3L:8294729-8294849 ( 77) GAAAGTGC 1 chrX:14173560-14173680 ( 107) GAAAGTGC 1 chr3L:4304378-4304498 ( 48) GAAAGTAA 1 chr2L:14207273-14207393 ( 58) GAAAGTAA 1 chr3R:31528778-31528898 ( 33) GAAAGTAA 1 chr2L:19783267-19783387 ( 56) GAAAGTGC 1 chr3R:6237843-6237963 ( 100) GAAAGTGC 1 chr2R:7985826-7985946 ( 41) GAAAGTGC 1 chr3R:4811273-4811393 ( 65) GAAAGTAA 1 chr3L:14429097-14429217 ( 57) GAAAGTGC 1 chr3L:13381320-13381440 ( 67) GAAAGTAA 1 chr3L:16340023-16340143 ( 78) GAAAGTAA 1 chr2L:10781391-10781511 ( 51) GAAAGTAA 1 chr2R:16796492-16796612 ( 34) GAAAATGA 1 chr2R:13926936-13927056 ( 40) GAAAGTGG 1 chr2L:14641539-14641659 ( 83) GAAAGTGG 1 chr3L:17960386-17960506 ( 49) GAAAATGA 1 chr3R:28684944-28685064 ( 41) GAAAATGA 1 chrX:1100483-1100603 ( 52) GAAAATGA 1 chr2L:13918505-13918625 ( 26) GAAAATGA 1 chr2R:6968686-6968806 ( 19) GAAAGTGG 1 chrX:11842118-11842238 ( 90) GAAAATGA 1 chr3L:16546298-16546418 ( 101) GAAAATGA 1 chr2R:9013620-9013740 ( 78) GAAAGTGG 1 chr2L:10515954-10516074 ( 80) AAAAGCGA 1 chr3L:21291220-21291340 ( 61) AAAAGCGA 1 chrX:2279958-2280078 ( 26) AAAAGCGA 1 chr2R:8979701-8979821 ( 74) AAAAGCGA 1 chrX:17715080-17715200 ( 19) GAAAGAGA 1 chr2R:15739479-15739599 ( 13) GAAAGAGA 1 chr2R:23874228-23874348 ( 12) GAAAGAGA 1 chr2L:11502862-11502982 ( 52) GAAAGAGA 1 chr2R:18238879-18238999 ( 34) GAAAGGGA 1 chr2R:5880582-5880702 ( 106) GAAAGGGA 1 chr3L:5599781-5599901 ( 54) GAAAGGGA 1 chr3L:21704263-21704383 ( 1) GAAAGTTA 1 chr3R:6226313-6226433 ( 70) GAAAGTTA 1 chrX:1312665-1312785 ( 14) GAAAGCGC 1 chr2L:8735137-8735257 ( 109) GAAAGCAA 1 chr3L:6268490-6268610 ( 41) GAAAGTTA 1 chr3R:31483199-31483319 ( 76) GAAAGTTA 1 chr2R:16020753-16020873 ( 74) GAAAGCAA 1 chr3L:4296928-4297048 ( 63) GAAAGTTA 1 chrX:5297232-5297352 ( 18) GAAAGCAA 1 chr3R:4475519-4475639 ( 32) GAAAGCGC 1 chr3R:24524554-24524674 ( 64) GAAAGCAA 1 chr3R:9879425-9879545 ( 74) GAAAGCAA 1 chr3L:13250192-13250312 ( 52) GAAAGCAA 1 chr3R:19033544-19033664 ( 110) AAAAGTGC 1 chrX:12002711-12002831 ( 56) AAAAGTAA 1 chr3L:18988189-18988309 ( 83) GAAAACGA 1 chr2R:24585599-24585719 ( 67) AAAAGTAA 1 chr3L:16271035-16271155 ( 68) AAAAGTGC 1 chrX:10216773-10216893 ( 52) AAAAGTGC 1 chr2L:7004308-7004428 ( 87) GAAAACGA 1 chr3R:15436337-15436457 ( 40) GAAAACGA 1 chr2R:17397319-17397439 ( 65) GAAAACGA 1 chrX:8893507-8893627 ( 75) AAAAGTAA 1 chr3R:11661326-11661446 ( 57) AAAAGTGC 1 chrX:17204301-17204421 ( 34) GAAAACGA 1 chr3L:4533359-4533479 ( 83) GAAAACGA 1 chr3R:6097165-6097285 ( 67) GAAAACGA 1 chr2R:11953609-11953729 ( 45) AAAAGTGC 1 chr3R:21067053-21067173 ( 57) AAAAGTGG 1 chr3R:9217746-9217866 ( 38) AAAAATGA 1 chr3R:21094431-21094551 ( 76) GAGAGTGA 1 chrX:22512221-22512341 ( 33) GAGAGTGA 1 chrX:12453862-12453982 ( 88) GAGAGTGA 1 chr2L:18619338-18619458 ( 69) GAAAATAA 1 chr3L:7106531-7106651 ( 57) GAAAATGG 1 chrX:19163585-19163705 ( 8) GAAAATGG 1 chrX:8258737-8258857 ( 45) AAAAGAGA 1 chr2L:14179530-14179650 ( 87) AAAAGGGA 1 chrX:8882970-8883090 ( 27) AAAAGCGC 1 chr2R:1649473-1649593 ( 59) AAAAGCAA 1 chrX:9224562-9224682 ( 72) AAAAGTTA 1 chr3R:6102865-6102985 ( 3) AAAAGCGG 1 chr3R:6688323-6688443 ( 35) GAAAGAAA 1 chr2L:10663144-10663264 ( 56) GAAAGAAA 1 chr2L:11505038-11505158 ( 34) GAAAGGGC 1 chr3L:4269332-4269452 ( 26) GAAAAAGA 1 chr2R:16089765-16089885 ( 67) GAAAGGGG 1 chr2R:24758129-24758249 ( 73) GAAAGTTC 1 chr2L:4801855-4801975 ( 59) GAAAACAA 1 chr2L:14668539-14668659 ( 108) GAAAGTTG 1 chr3L:17488729-17488849 ( 44) GAAAACAA 1 chr3R:24773183-24773303 ( 45) GAAAGCAG 1 chr2R:10069712-10069832 ( 111) AAAAGTAG 1 chr3R:6316950-6317070 ( 24) AAAAATGG 1 chr2R:7747630-7747750 ( 81) AAAAATGG 1 chr3L:21301903-21302023 ( 11) GAGAATGA 1 chr3R:11608605-11608725 ( 109) AAAAAAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGTGA MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.9451 E= 9.0e-098 -6 -1395 170 -1395 182 -1395 -1395 -1395 178 -1395 -314 -1395 182 -1395 -1395 -1395 -84 -1395 191 -1395 -231 -8 -256 136 -84 -1395 182 -243 151 -104 -134 -1395 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGTGA MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 158 E= 9.0e-098 0.272152 0.000000 0.727848 0.000000 1.000000 0.000000 0.000000 0.000000 0.974684 0.000000 0.025316 0.000000 1.000000 0.000000 0.000000 0.000000 0.158228 0.000000 0.841772 0.000000 0.056962 0.208861 0.037975 0.696203 0.158228 0.000000 0.791139 0.050633 0.803797 0.107595 0.088608 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GAAAGTGA MEME-2 regular expression -------------------------------------------------------------------------------- [GA]AAAG[TC]GA -------------------------------------------------------------------------------- Time 13.44 secs. ******************************************************************************** ******************************************************************************** MOTIF AAAYGAAA MEME-3 width = 8 sites = 87 llr = 627 E-value = 1.4e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif AAAYGAAA MEME-3 Description -------------------------------------------------------------------------------- Simplified A 7a613aaa pos.-specific C 3:14:::: probability G ::2:7::: matrix T ::15:::: bits 2.2 2.0 1.7 * *** 1.5 * *** Relative 1.3 * *** Entropy 1.1 * **** (10.4 bits) 0.9 ** **** 0.7 ** ***** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel AAATGAAA consensus C CA sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYGAAA MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16271035-16271155 58 2.54e-05 TAAAAATACC AAACGAAA CCAAAAGTGC chrX:4662352-4662472 34 2.54e-05 GTGCCAAAGA AAACGAAA ACAATATTCG chr3L:17960386-17960506 39 2.54e-05 AATCCAGGTC AAACGAAA TGGAAAATGA chr3R:31528778-31528898 44 2.54e-05 AAAGTAAAAG AAACGAAA GTTACTACGT chrX:2279958-2280078 62 2.54e-05 cgtgtaacga aaacgaaa tcgaaaGCTT chr3L:516683-516803 27 2.54e-05 AACGAAACTC AAACGAAA GCGAAAGAGG chrX:14894011-14894131 35 2.54e-05 aattgtatga aaacgaaa gacaatgaaa chr3L:16546298-16546418 61 2.54e-05 ATgaaattga aaacgaaa ctccaattcg chr2L:8287015-8287135 54 5.67e-05 GGCCCGGACA AAATGAAA CTCCGCCAAG chr3R:12360031-12360151 97 5.67e-05 AAGCAAACAA AAATGAAA GCTTTCATTA chr3R:12666345-12666465 75 5.67e-05 TTGAAAGCGA AAATGAAA AGGGGCAGGT chr3R:31500246-31500366 89 5.67e-05 TCGAGGCATG AAATGAAA AGTTTTGTCC chr2L:14169792-14169912 57 5.67e-05 ACAAGATACG AAATGAAA GCGAAATTTT chrX:1100483-1100603 43 5.67e-05 atggaaatgg aaatgaaa tgaaaatgaa chr3R:21700607-21700727 69 5.67e-05 TGTCAACGGC AAATGAAA GTGTTTGCCA chr2L:18619338-18619458 85 7.66e-05 AAAGGAAAGG CAACGAAA ATGTTTGCTT chr3R:24778357-24778477 7 7.66e-05 aaaaaa caacgaaa aCTGAAACAC chrX:11757031-11757151 86 7.66e-05 ATCTTTGGCC CAACGAAA CGGTTAGAAA chr2R:22900503-22900623 111 1.01e-04 AAACACAAGT CAATGAAA AA chrX:17513399-17513519 21 1.01e-04 TATGCGGACC CAATGAAA GTGTTATAAA chr3L:16406883-16407003 36 1.01e-04 TGCAATGTTC CAATGAAA ATTCTAATCA chr3L:3274911-3275031 50 1.01e-04 CTTTCGTTTT CAATGAAA CCTGTAGCCG chrX:19163585-19163705 103 1.01e-04 CCGAACCCTC CAATGAAA GACCGCTAAC chr3R:6688323-6688443 54 1.21e-04 AACGCGTGTT AAGCGAAA GATACTGACA chrX:15172010-15172130 111 1.21e-04 cgaTGACAAG AAGCGAAA GT chrX:10089060-10089180 79 1.21e-04 tgaaattgat aagcgaaa atgGGTGACA chr3R:23785427-23785547 80 1.21e-04 GTGAGCGGGG AAGCGAAA AGGGGGGCAG chr3L:13169419-13169539 93 1.21e-04 GGGCGGCAAA AAGCGAAA GAAAAGTGAG chr3L:7821314-7821434 44 1.21e-04 CCCCCTCGAC AAGCGAAA TGAAAGTGAG chrX:8893507-8893627 103 1.46e-04 AGTGTTGTGC AAGTGAAA AAGAGAAAGA chr3L:18017801-18017921 101 1.46e-04 CGTCTTGGGC AAGTGAAA TAGGTTAATG chrX:1312665-1312785 30 1.78e-04 GCGGGGACCA AAACAAAA TCAAACCCAA chr3L:2437710-2437830 101 1.78e-04 TGAATGAAAA AAACAAAA ACAGCATCCA chr3L:8294729-8294849 38 1.78e-04 GCGGCAAGCA AAACAAAA ACAATTGTTG chr2L:14641539-14641659 73 1.78e-04 ACTGCGCCTG AAACAAAA ATGAAAGTGG chr3L:17488729-17488849 79 1.78e-04 AGATATTTCG AAACAAAA TAGAGAGGGG chr3R:24202850-24202970 17 1.78e-04 CAAAGACAAC AAACAAAA GTTCGAAAGG chr3L:7106531-7106651 19 2.18e-04 ACCCGCCAAT AAATAAAA CTTTCGCTTT chr2L:7004308-7004428 70 2.18e-04 ATGGAACTTC AAATAAAA AAGCATGAGG chr3L:4269332-4269452 35 2.18e-04 TGAAAAAGAT AAATAAAA TAACACCGCA chrX:22512221-22512341 97 2.18e-04 CGGAGCCCCC AAATAAAA AATCCGAACA chrX:9224562-9224682 84 2.18e-04 AAGTTAAAAC AAATAAAA CAACCGCTAG chrX:17181371-17181491 6 2.18e-04 aacaa aaataaaa gtaaataaat chrX:11842118-11842238 64 2.18e-04 GCAAACAAAT AAATAAAA ACCCGTCAAA chr3R:4811273-4811393 113 2.18e-04 ACCCCTTATC AAATAAAA chr2L:11502862-11502982 81 2.18e-04 aagcggaata aaataaaa agTTTCACTT chr3L:4533359-4533479 70 2.33e-04 TTTTATCAGC CAGCGAAA GAAACGAAAA chr3R:31477306-31477426 66 2.33e-04 CAACCGCCAA CAGCGAAA GCTGTTATCA chr3R:21094431-21094551 88 2.73e-04 GAGTGACAAA AACCGAAA TGAAGTGCAC chr2L:11505038-11505158 17 2.73e-04 GCAATTGTGC AACCGAAA AGGAAAGTTG chr3L:3352692-3352812 37 2.73e-04 AGCGGCGAAG CAGTGAAA GTTTTCGGTT chr3R:6237843-6237963 12 2.73e-04 ATTGTGGAGG CAGTGAAA ACAGACACTC chr2L:14687498-14687618 92 2.73e-04 CACAAGACTA CAGTGAAA CGAGAAAGCG chr2L:18518996-18519116 16 2.73e-04 CTTTGCTCAC CAGTGAAA AATCAATTTG chr3R:23307932-23308052 67 3.22e-04 TCTTGGCGAG AACTGAAA GATTGTCATT chr3R:31483199-31483319 46 3.22e-04 GTTCCAGAAA AACTGAAA GTTGTAATTG chr3R:24968154-24968274 71 3.22e-04 CTAAAACTAA Aactgaaa ctgaagcaga chr3R:21857203-21857323 34 3.22e-04 TCAAAATAGT CAACAAAA AATCATAAAC chr2L:13918505-13918625 45 3.22e-04 atgaaactga aactgaaa aCTCACATGT chr2R:1649473-1649593 2 3.22e-04 A CAACAAAA TAAATTCACA chr3L:3105988-3106108 74 3.22e-04 ACGAAAGCGA AACTGAAA CCCCCCACCA chr2R:12566692-12566812 27 3.77e-04 ACTGCAATTG CAATAAAA CCAAACACTC chr3L:18988189-18988309 73 3.77e-04 tccgagacga aatcgaaa ttgaaaacga chr3R:8946543-8946663 108 3.77e-04 TTGGAGGTTC CAATAAAA ATGGG chr3L:6268490-6268610 31 3.77e-04 GAGCAGGTGA AATCGAAA TCGAAAGTTA chr3R:28684944-28685064 64 3.77e-04 GGCCACTAGA AATCGAAA GTGTTGGGTG chr2L:14207273-14207393 98 3.77e-04 GACAGTATTT CAATAAAA ACCCGAAAAT chr3R:15436961-15437081 76 3.77e-04 ACGGGCAGAC AATCGAAA GTTTATGTCA chr2R:18925871-18925991 36 3.77e-04 ATGGAGCACA CAATAAAA GCCAAATAAA chr3L:9569333-9569453 111 3.77e-04 actATGGGGC CAATAAAA CT chr3R:13816860-13816980 20 4.65e-04 GTATTTTGGT AAAAGAAA TCGAGTCAGC chr2R:23056004-23056124 40 4.65e-04 GCAATTTAAC AAAAGAAA GGAGAAGAAG chr3L:3108999-3109119 64 4.65e-04 TAATTGTTGA AAAAGAAA GGCACTCACA chr2R:18913000-18913120 93 4.65e-04 TAAGTCACCG AATTGAAA GTTTCGAAAG chrX:5787003-5787123 53 4.65e-04 GCGCCATCGA AAAAGAAA ATTCGAAAGC chr2R:23874228-23874348 59 4.65e-04 TGTAATACCA AAGCAAAA AGATGCAGAC chr3R:9879425-9879545 64 4.65e-04 AAGATACAAG AAAAGAAA CAGAAAGCAA chrX:2991071-2991191 53 5.12e-04 TTCGAAACGC CACCGAAA AAAAGGTTAA chr3L:21117599-21117719 101 6.19e-04 ACTCGAACAT CAGCAAAA GTCTAATCAG chr2R:9013620-9013740 68 6.19e-04 GAGAGACCCG CATTGAAA ACGAAAGTGG chr3R:24714550-24714670 42 6.69e-04 AACAATGCGA CAGTAAAA TTTATAGAAC chr2R:20158739-20158859 85 7.56e-04 TTTCAACAGT AATCAAAA CTGTCCACTT chr2R:18108899-18109019 88 8.35e-04 TTTTGTTTTT AATTAAAA ACAAAGCTTA chr2R:17621724-17621844 58 8.56e-04 TGAATTTGGT GAACGAAA GGCCCCAAGG chr2R:11953609-11953729 35 9.00e-04 GAATCCAACG GAATGAAA TCAAAAGTGC chr3R:8970846-8970966 29 9.94e-04 GCAGCCAAGA AACAGAAA CAGAGTCTGA chr3R:29893169-29893289 85 1.09e-03 CCGGGTAGAA AATAGAAA TTTATGGTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYGAAA MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16271035-16271155 2.5e-05 57_[+3]_55 chrX:4662352-4662472 2.5e-05 33_[+3]_79 chr3L:17960386-17960506 2.5e-05 38_[+3]_74 chr3R:31528778-31528898 2.5e-05 43_[+3]_69 chrX:2279958-2280078 2.5e-05 61_[+3]_51 chr3L:516683-516803 2.5e-05 26_[+3]_86 chrX:14894011-14894131 2.5e-05 34_[+3]_78 chr3L:16546298-16546418 2.5e-05 60_[+3]_52 chr2L:8287015-8287135 5.7e-05 53_[+3]_59 chr3R:12360031-12360151 5.7e-05 96_[+3]_16 chr3R:12666345-12666465 5.7e-05 74_[+3]_38 chr3R:31500246-31500366 5.7e-05 88_[+3]_24 chr2L:14169792-14169912 5.7e-05 56_[+3]_56 chrX:1100483-1100603 5.7e-05 42_[+3]_70 chr3R:21700607-21700727 5.7e-05 68_[+3]_44 chr2L:18619338-18619458 7.7e-05 84_[+3]_28 chr3R:24778357-24778477 7.7e-05 6_[+3]_106 chrX:11757031-11757151 7.7e-05 85_[+3]_27 chr2R:22900503-22900623 0.0001 110_[+3]_2 chrX:17513399-17513519 0.0001 20_[+3]_92 chr3L:16406883-16407003 0.0001 35_[+3]_77 chr3L:3274911-3275031 0.0001 49_[+3]_63 chrX:19163585-19163705 0.0001 102_[+3]_10 chr3R:6688323-6688443 0.00012 53_[+3]_59 chrX:15172010-15172130 0.00012 110_[+3]_2 chrX:10089060-10089180 0.00012 78_[+3]_34 chr3R:23785427-23785547 0.00012 79_[+3]_33 chr3L:13169419-13169539 0.00012 92_[+3]_20 chr3L:7821314-7821434 0.00012 43_[+3]_69 chrX:8893507-8893627 0.00015 102_[+3]_10 chr3L:18017801-18017921 0.00015 100_[+3]_12 chrX:1312665-1312785 0.00018 29_[+3]_83 chr3L:2437710-2437830 0.00018 100_[+3]_12 chr3L:8294729-8294849 0.00018 37_[+3]_75 chr2L:14641539-14641659 0.00018 72_[+3]_40 chr3L:17488729-17488849 0.00018 78_[+3]_34 chr3R:24202850-24202970 0.00018 16_[+3]_96 chr3L:7106531-7106651 0.00022 18_[+3]_94 chr2L:7004308-7004428 0.00022 69_[+3]_43 chr3L:4269332-4269452 0.00022 34_[+3]_78 chrX:22512221-22512341 0.00022 96_[+3]_16 chrX:9224562-9224682 0.00022 83_[+3]_29 chrX:17181371-17181491 0.00022 5_[+3]_107 chrX:11842118-11842238 0.00022 63_[+3]_49 chr3R:4811273-4811393 0.00022 112_[+3] chr2L:11502862-11502982 0.00022 80_[+3]_32 chr3L:4533359-4533479 0.00023 69_[+3]_43 chr3R:31477306-31477426 0.00023 65_[+3]_47 chr3R:21094431-21094551 0.00027 87_[+3]_25 chr2L:11505038-11505158 0.00027 16_[+3]_96 chr3L:3352692-3352812 0.00027 36_[+3]_76 chr3R:6237843-6237963 0.00027 11_[+3]_101 chr2L:14687498-14687618 0.00027 91_[+3]_21 chr2L:18518996-18519116 0.00027 15_[+3]_97 chr3R:23307932-23308052 0.00032 66_[+3]_46 chr3R:31483199-31483319 0.00032 45_[+3]_67 chr3R:24968154-24968274 0.00032 70_[+3]_42 chr3R:21857203-21857323 0.00032 33_[+3]_79 chr2L:13918505-13918625 0.00032 44_[+3]_68 chr2R:1649473-1649593 0.00032 1_[+3]_111 chr3L:3105988-3106108 0.00032 73_[+3]_39 chr2R:12566692-12566812 0.00038 26_[+3]_86 chr3L:18988189-18988309 0.00038 72_[+3]_40 chr3R:8946543-8946663 0.00038 107_[+3]_5 chr3L:6268490-6268610 0.00038 30_[+3]_82 chr3R:28684944-28685064 0.00038 63_[+3]_49 chr2L:14207273-14207393 0.00038 97_[+3]_15 chr3R:15436961-15437081 0.00038 75_[+3]_37 chr2R:18925871-18925991 0.00038 35_[+3]_77 chr3L:9569333-9569453 0.00038 110_[+3]_2 chr3R:13816860-13816980 0.00047 19_[+3]_93 chr2R:23056004-23056124 0.00047 39_[+3]_73 chr3L:3108999-3109119 0.00047 63_[+3]_49 chr2R:18913000-18913120 0.00047 92_[+3]_20 chrX:5787003-5787123 0.00047 52_[+3]_60 chr2R:23874228-23874348 0.00047 58_[+3]_54 chr3R:9879425-9879545 0.00047 63_[+3]_49 chrX:2991071-2991191 0.00051 52_[+3]_60 chr3L:21117599-21117719 0.00062 100_[+3]_12 chr2R:9013620-9013740 0.00062 67_[+3]_45 chr3R:24714550-24714670 0.00067 41_[+3]_71 chr2R:20158739-20158859 0.00076 84_[+3]_28 chr2R:18108899-18109019 0.00084 87_[+3]_25 chr2R:17621724-17621844 0.00086 57_[+3]_55 chr2R:11953609-11953729 0.0009 34_[+3]_78 chr3R:8970846-8970966 0.00099 28_[+3]_84 chr3R:29893169-29893289 0.0011 84_[+3]_28 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYGAAA MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF AAAYGAAA width=8 seqs=87 chr3L:16271035-16271155 ( 58) AAACGAAA 1 chrX:4662352-4662472 ( 34) AAACGAAA 1 chr3L:17960386-17960506 ( 39) AAACGAAA 1 chr3R:31528778-31528898 ( 44) AAACGAAA 1 chrX:2279958-2280078 ( 62) AAACGAAA 1 chr3L:516683-516803 ( 27) AAACGAAA 1 chrX:14894011-14894131 ( 35) AAACGAAA 1 chr3L:16546298-16546418 ( 61) AAACGAAA 1 chr2L:8287015-8287135 ( 54) AAATGAAA 1 chr3R:12360031-12360151 ( 97) AAATGAAA 1 chr3R:12666345-12666465 ( 75) AAATGAAA 1 chr3R:31500246-31500366 ( 89) AAATGAAA 1 chr2L:14169792-14169912 ( 57) AAATGAAA 1 chrX:1100483-1100603 ( 43) AAATGAAA 1 chr3R:21700607-21700727 ( 69) AAATGAAA 1 chr2L:18619338-18619458 ( 85) CAACGAAA 1 chr3R:24778357-24778477 ( 7) CAACGAAA 1 chrX:11757031-11757151 ( 86) CAACGAAA 1 chr2R:22900503-22900623 ( 111) CAATGAAA 1 chrX:17513399-17513519 ( 21) CAATGAAA 1 chr3L:16406883-16407003 ( 36) CAATGAAA 1 chr3L:3274911-3275031 ( 50) CAATGAAA 1 chrX:19163585-19163705 ( 103) CAATGAAA 1 chr3R:6688323-6688443 ( 54) AAGCGAAA 1 chrX:15172010-15172130 ( 111) AAGCGAAA 1 chrX:10089060-10089180 ( 79) AAGCGAAA 1 chr3R:23785427-23785547 ( 80) AAGCGAAA 1 chr3L:13169419-13169539 ( 93) AAGCGAAA 1 chr3L:7821314-7821434 ( 44) AAGCGAAA 1 chrX:8893507-8893627 ( 103) AAGTGAAA 1 chr3L:18017801-18017921 ( 101) AAGTGAAA 1 chrX:1312665-1312785 ( 30) AAACAAAA 1 chr3L:2437710-2437830 ( 101) AAACAAAA 1 chr3L:8294729-8294849 ( 38) AAACAAAA 1 chr2L:14641539-14641659 ( 73) AAACAAAA 1 chr3L:17488729-17488849 ( 79) AAACAAAA 1 chr3R:24202850-24202970 ( 17) AAACAAAA 1 chr3L:7106531-7106651 ( 19) AAATAAAA 1 chr2L:7004308-7004428 ( 70) AAATAAAA 1 chr3L:4269332-4269452 ( 35) AAATAAAA 1 chrX:22512221-22512341 ( 97) AAATAAAA 1 chrX:9224562-9224682 ( 84) AAATAAAA 1 chrX:17181371-17181491 ( 6) AAATAAAA 1 chrX:11842118-11842238 ( 64) AAATAAAA 1 chr3R:4811273-4811393 ( 113) AAATAAAA 1 chr2L:11502862-11502982 ( 81) AAATAAAA 1 chr3L:4533359-4533479 ( 70) CAGCGAAA 1 chr3R:31477306-31477426 ( 66) CAGCGAAA 1 chr3R:21094431-21094551 ( 88) AACCGAAA 1 chr2L:11505038-11505158 ( 17) AACCGAAA 1 chr3L:3352692-3352812 ( 37) CAGTGAAA 1 chr3R:6237843-6237963 ( 12) CAGTGAAA 1 chr2L:14687498-14687618 ( 92) CAGTGAAA 1 chr2L:18518996-18519116 ( 16) CAGTGAAA 1 chr3R:23307932-23308052 ( 67) AACTGAAA 1 chr3R:31483199-31483319 ( 46) AACTGAAA 1 chr3R:24968154-24968274 ( 71) AACTGAAA 1 chr3R:21857203-21857323 ( 34) CAACAAAA 1 chr2L:13918505-13918625 ( 45) AACTGAAA 1 chr2R:1649473-1649593 ( 2) CAACAAAA 1 chr3L:3105988-3106108 ( 74) AACTGAAA 1 chr2R:12566692-12566812 ( 27) CAATAAAA 1 chr3L:18988189-18988309 ( 73) AATCGAAA 1 chr3R:8946543-8946663 ( 108) CAATAAAA 1 chr3L:6268490-6268610 ( 31) AATCGAAA 1 chr3R:28684944-28685064 ( 64) AATCGAAA 1 chr2L:14207273-14207393 ( 98) CAATAAAA 1 chr3R:15436961-15437081 ( 76) AATCGAAA 1 chr2R:18925871-18925991 ( 36) CAATAAAA 1 chr3L:9569333-9569453 ( 111) CAATAAAA 1 chr3R:13816860-13816980 ( 20) AAAAGAAA 1 chr2R:23056004-23056124 ( 40) AAAAGAAA 1 chr3L:3108999-3109119 ( 64) AAAAGAAA 1 chr2R:18913000-18913120 ( 93) AATTGAAA 1 chrX:5787003-5787123 ( 53) AAAAGAAA 1 chr2R:23874228-23874348 ( 59) AAGCAAAA 1 chr3R:9879425-9879545 ( 64) AAAAGAAA 1 chrX:2991071-2991191 ( 53) CACCGAAA 1 chr3L:21117599-21117719 ( 101) CAGCAAAA 1 chr2R:9013620-9013740 ( 68) CATTGAAA 1 chr3R:24714550-24714670 ( 42) CAGTAAAA 1 chr2R:20158739-20158859 ( 85) AATCAAAA 1 chr2R:18108899-18109019 ( 88) AATTAAAA 1 chr2R:17621724-17621844 ( 58) GAACGAAA 1 chr2R:11953609-11953729 ( 35) GAATGAAA 1 chr3R:8970846-8970966 ( 29) AACAGAAA 1 chr3R:29893169-29893289 ( 85) AATAGAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYGAAA MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.68232 E= 1.4e-004 128 38 -328 -1309 182 -1309 -1309 -1309 108 -110 -19 -139 -181 98 -1309 83 13 -1309 162 -1309 182 -1309 -1309 -1309 182 -1309 -1309 -1309 182 -1309 -1309 -1309 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYGAAA MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 87 E= 1.4e-004 0.689655 0.287356 0.022989 0.000000 1.000000 0.000000 0.000000 0.000000 0.597701 0.103448 0.195402 0.103448 0.080460 0.436782 0.000000 0.482759 0.310345 0.000000 0.689655 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif AAAYGAAA MEME-3 regular expression -------------------------------------------------------------------------------- [AC]AA[TC][GA]AAA -------------------------------------------------------------------------------- Time 19.16 secs. ******************************************************************************** ******************************************************************************** MOTIF CTTTCRYT MEME-4 width = 8 sites = 29 llr = 263 E-value = 2.5e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTTTCRYT MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::5:: pos.-specific C 7:::a:6: probability G 3::::5:: matrix T :aaa::4a bits 2.2 * 2.0 **** * 1.7 **** * 1.5 **** * Relative 1.3 ***** * Entropy 1.1 ******** (13.1 bits) 0.9 ******** 0.7 ******** 0.4 ******** 0.2 ******** 0.0 -------- Multilevel CTTTCGCT consensus G AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCRYT MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:11608605-11608725 54 1.32e-05 ATGGCAAACA CTTTCGCT TTTCGCTTTT chr3R:24712468-24712588 2 1.32e-05 T CTTTCGCT CCTTTCTTTC chr3R:20969572-20969692 62 1.32e-05 CTTTGGTAAA ctttcgct ctctctctct chr3L:4265950-4266070 63 1.32e-05 TAATGAAACA CTTTCGCT CGTTAAGAGT chr3L:5608925-5609045 100 1.32e-05 CTTTTTCCGC CTTTCGCT CTCTTGCCGC chrX:11724857-11724977 26 3.00e-05 ctatctctcc ctttcact ttcactttct chrX:14486858-14486978 39 3.00e-05 GTTCAATTAA CTTTCACT GTTAGCTGGC chr3R:6316950-6317070 50 3.00e-05 CTTCCAGTAA CTTTCACT TGCCGCGTTT chrX:12001146-12001266 45 3.00e-05 GTCTGTGAAA CTTTCACT GCTCGACTCC chrX:11842118-11842238 22 3.00e-05 CCGGTCTGGC CTTTCACT ATTAGCCGCT chr2R:8999686-8999806 53 3.00e-05 TCTTATTTCC CTTTCACT TGCCATCAAA chrX:19163585-19163705 67 3.00e-05 TCCGGTCTCA CTTTCACT GGGAATGCAA chr3L:14429097-14429217 73 3.00e-05 GCGTTGAAAA CTTTCACT TGGGTTCCTA chr2R:17635502-17635622 37 4.62e-05 TTTTCTGGGG CTTTCGTT CGAGCGCTTT chr3R:31528778-31528898 21 4.62e-05 AGATTATGAG CTTTCGTT AACTGAAAGT chr3R:10154096-10154216 2 4.62e-05 G CTTTCGTT TAAGCTCCGC chrX:1856757-1856877 21 4.62e-05 CGAGAGATGA CTTTCGTT GGGAAAGGTA chr3R:12360031-12360151 106 6.68e-05 AAAATGAAAG CTTTCATT ATCGCCG chrX:12453862-12453982 21 6.68e-05 TTAAAGTGGA CTTTCATT AAGTTCTTCG chr3L:18017801-18017921 39 6.68e-05 ctttcttcgt ctttcatt cAGTTATGTA chr3R:9879425-9879545 36 6.68e-05 TCACTTTTTA CTTTCATT GCGAGCTCAA chr2L:10515954-10516074 41 8.02e-05 TGCGCGGAGG GTTTCGCT GGGCGACGAT chr2R:9969594-9969714 79 8.02e-05 TTTCACTTTC GTTTCGCT GTACACGTGT chr3R:28827335-28827455 46 8.02e-05 CTGACTTTCG GTTTCGCT AGTTTCTGGC chr2R:12566692-12566812 48 9.72e-05 AACACTCTCC GTTTCACT TGACCCAATT chr2R:23873098-23873218 42 1.14e-04 GAAAGTGAAC GTTTCGTT CGTCTCCATG chrX:12501572-12501692 36 1.14e-04 TCCAATTTCT GTTTCGTT CCCGGttttt chrX:22512221-22512341 63 1.14e-04 AAATGTGCGA GTTTCGTT TGGTCTGGTC chr2R:24758129-24758249 39 1.35e-04 GGAACTTTTG GTTTCATT GAGATGCCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCRYT MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:11608605-11608725 1.3e-05 53_[+4]_59 chr3R:24712468-24712588 1.3e-05 1_[+4]_111 chr3R:20969572-20969692 1.3e-05 61_[+4]_51 chr3L:4265950-4266070 1.3e-05 62_[+4]_50 chr3L:5608925-5609045 1.3e-05 99_[+4]_13 chrX:11724857-11724977 3e-05 25_[+4]_87 chrX:14486858-14486978 3e-05 38_[+4]_74 chr3R:6316950-6317070 3e-05 49_[+4]_63 chrX:12001146-12001266 3e-05 44_[+4]_68 chrX:11842118-11842238 3e-05 21_[+4]_91 chr2R:8999686-8999806 3e-05 52_[+4]_60 chrX:19163585-19163705 3e-05 66_[+4]_46 chr3L:14429097-14429217 3e-05 72_[+4]_40 chr2R:17635502-17635622 4.6e-05 36_[+4]_76 chr3R:31528778-31528898 4.6e-05 20_[+4]_92 chr3R:10154096-10154216 4.6e-05 1_[+4]_111 chrX:1856757-1856877 4.6e-05 20_[+4]_92 chr3R:12360031-12360151 6.7e-05 105_[+4]_7 chrX:12453862-12453982 6.7e-05 20_[+4]_92 chr3L:18017801-18017921 6.7e-05 38_[+4]_74 chr3R:9879425-9879545 6.7e-05 35_[+4]_77 chr2L:10515954-10516074 8e-05 40_[+4]_72 chr2R:9969594-9969714 8e-05 78_[+4]_34 chr3R:28827335-28827455 8e-05 45_[+4]_67 chr2R:12566692-12566812 9.7e-05 47_[+4]_65 chr2R:23873098-23873218 0.00011 41_[+4]_71 chrX:12501572-12501692 0.00011 35_[+4]_77 chrX:22512221-22512341 0.00011 62_[+4]_50 chr2R:24758129-24758249 0.00013 38_[+4]_74 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCRYT MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTTTCRYT width=8 seqs=29 chr3R:11608605-11608725 ( 54) CTTTCGCT 1 chr3R:24712468-24712588 ( 2) CTTTCGCT 1 chr3R:20969572-20969692 ( 62) CTTTCGCT 1 chr3L:4265950-4266070 ( 63) CTTTCGCT 1 chr3L:5608925-5609045 ( 100) CTTTCGCT 1 chrX:11724857-11724977 ( 26) CTTTCACT 1 chrX:14486858-14486978 ( 39) CTTTCACT 1 chr3R:6316950-6317070 ( 50) CTTTCACT 1 chrX:12001146-12001266 ( 45) CTTTCACT 1 chrX:11842118-11842238 ( 22) CTTTCACT 1 chr2R:8999686-8999806 ( 53) CTTTCACT 1 chrX:19163585-19163705 ( 67) CTTTCACT 1 chr3L:14429097-14429217 ( 73) CTTTCACT 1 chr2R:17635502-17635622 ( 37) CTTTCGTT 1 chr3R:31528778-31528898 ( 21) CTTTCGTT 1 chr3R:10154096-10154216 ( 2) CTTTCGTT 1 chrX:1856757-1856877 ( 21) CTTTCGTT 1 chr3R:12360031-12360151 ( 106) CTTTCATT 1 chrX:12453862-12453982 ( 21) CTTTCATT 1 chr3L:18017801-18017921 ( 39) CTTTCATT 1 chr3R:9879425-9879545 ( 36) CTTTCATT 1 chr2L:10515954-10516074 ( 41) GTTTCGCT 1 chr2R:9969594-9969714 ( 79) GTTTCGCT 1 chr3R:28827335-28827455 ( 46) GTTTCGCT 1 chr2R:12566692-12566812 ( 48) GTTTCACT 1 chr2R:23873098-23873218 ( 42) GTTTCGTT 1 chrX:12501572-12501692 ( 36) GTTTCGTT 1 chrX:22512221-22512341 ( 63) GTTTCGTT 1 chr2R:24758129-24758249 ( 39) GTTTCATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCRYT MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.5678 E= 2.5e-001 -1150 171 30 -1150 -1150 -1150 -1150 188 -1150 -1150 -1150 188 -1150 -1150 -1150 188 -1150 218 -1150 -1150 77 -1150 121 -1150 -1150 141 -1150 61 -1150 -1150 -1150 188 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCRYT MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 29 E= 2.5e-001 0.000000 0.724138 0.275862 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.482759 0.000000 0.517241 0.000000 0.000000 0.586207 0.000000 0.413793 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTTTCRYT MEME-4 regular expression -------------------------------------------------------------------------------- [CG]TTTC[GA][CT]T -------------------------------------------------------------------------------- Time 24.72 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCTGB MEME-5 width = 8 sites = 37 llr = 313 E-value = 4.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCTGB MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a3:8224 probability G a::a::82 matrix T ::7:28:3 bits 2.2 ** * 2.0 ** * 1.7 ** * 1.5 ** ** Relative 1.3 ** ** * Entropy 1.1 ******* (12.2 bits) 0.9 ******* 0.7 ******* 0.4 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCTGC consensus C CCT sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGB MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:4304378-4304498 25 8.98e-06 ACCGGTTGCC GCTGCTGC CATTGCCAGC chr2L:19112334-19112454 15 8.98e-06 tgctgctgct gctgctgc tgcttctgGC chr2L:10781391-10781511 86 8.98e-06 CATTTTAGAA GCTGCTGC GCTCTCCACG chr3R:11661326-11661446 3 2.00e-05 TG GCTGCTGT GGAAAATTGG chr3L:4296928-4297048 105 2.00e-05 TTTTTCTGTG GCTGCTGT TGCTGCTG chrX:10216773-10216893 36 3.64e-05 TTCACCAAAT GCTGCTGG ACGCACCCAA chr3R:24712468-24712588 91 3.64e-05 AATTCATGTA GCTGCTGG TCGCGTGCTG chrX:22511692-22511812 22 3.64e-05 TCACTTCTCG GCTGCTGG CAGAATCGAC chr2R:23443930-23444050 69 3.64e-05 CCGGCGCTCA GCTGCTGG TCCACAGACC chr2R:14319610-14319730 6 3.64e-05 CGTTG GCTGCTGG CTGTTTTTTT chr3R:9879425-9879545 3 3.64e-05 GT GCCGCTGC TCCCATTTCT chr2R:7284644-7284764 1 3.64e-05 . GCCGCTGC TCTGGATGCT chrX:18673039-18673159 64 5.27e-05 CCAGCGGACT GCCGCTGT TGATTTATAT chrX:3885970-3886090 5 5.27e-05 TTTC GCTGCCGC ACTGAATAAT chrX:17715080-17715200 99 5.27e-05 TTGCGCTGTC GCCGCTGT AAATGTTGCC chr2L:13918505-13918625 95 5.27e-05 TTTCCACTTG GCTGCCGC CAACAAGCCG chr3L:1212252-1212372 98 5.27e-05 TTATTGAATC GCCGCTGT ATAACTAATA chr2R:8253914-8254034 108 5.27e-05 TCGTGTGCCG GCCGCTGT CTTTT chr2R:18913000-18913120 61 6.01e-05 ATTTCATTAG GCCGCTGG CGCTGCACAA chrX:8258737-8258857 28 6.89e-05 TACACTTACG GCTGCTCC TGTGAGTGCA chr3R:16666056-16666176 25 6.89e-05 GGTCACACCA GCTGCTCC CCGCCTGCTT chr2L:19944807-19944927 47 6.89e-05 CCTCCAAAGT GCTGCTCC ATCAAGAGGG chr3L:14743430-14743550 68 7.79e-05 CACTCATTTG GCTGCCGT CCCTCTCCCT chr3L:2148813-2148933 23 7.79e-05 TTGTTTTTCT GCTGCCGT TTTTCAAATA chr3R:24216163-24216283 35 9.12e-05 ACAAAACGCC GCCGCCGC CGCAGTGAAA chr3R:15436961-15437081 95 9.12e-05 TTTATGTCAT GCTGCCGg cagcaacgca chr2R:18108899-18109019 58 1.02e-04 GCATACACAA GCTGCTCT ACTTCTCAAA chr2L:7086715-7086835 99 1.29e-04 tgtctttgtg gctgttgc ttgtctAGAC chrX:5787003-5787123 20 1.29e-04 tattgctatt gctgttgc tattgcGGTG chr3R:6237843-6237963 81 1.29e-04 TCACAAATGG GCTGTTGC TCAGAAAAAG chr2R:24585599-24585719 102 1.72e-04 TGGCTATAAA GCCGCTCT GACCTCAATC chrX:8841588-8841708 39 1.72e-04 GCGACTGACA GCTGCCCC CAGGGGGTGA chr2R:18925871-18925991 96 1.72e-04 TATGGCCGTG GCTGTTGT GTGAAAGTGT chr3R:16594181-16594301 100 1.72e-04 tgttgttgcg gctgttgt tgttgttgtt chr2R:8987014-8987134 39 2.00e-04 TATTGTTGTC GCCGCTCG CCGTTTTTTC chr3L:17938761-17938881 73 2.00e-04 TTCGCTGTCG GCCGTTGC GCAGGCGCAG chrX:12002711-12002831 90 2.42e-04 CTTTTTGGGG GCTGCCCG GCTATGCCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGB MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:4304378-4304498 9e-06 24_[+5]_88 chr2L:19112334-19112454 9e-06 14_[+5]_98 chr2L:10781391-10781511 9e-06 85_[+5]_27 chr3R:11661326-11661446 2e-05 2_[+5]_110 chr3L:4296928-4297048 2e-05 104_[+5]_8 chrX:10216773-10216893 3.6e-05 35_[+5]_77 chr3R:24712468-24712588 3.6e-05 90_[+5]_22 chrX:22511692-22511812 3.6e-05 21_[+5]_91 chr2R:23443930-23444050 3.6e-05 68_[+5]_44 chr2R:14319610-14319730 3.6e-05 5_[+5]_107 chr3R:9879425-9879545 3.6e-05 2_[+5]_110 chr2R:7284644-7284764 3.6e-05 [+5]_112 chrX:18673039-18673159 5.3e-05 63_[+5]_49 chrX:3885970-3886090 5.3e-05 4_[+5]_108 chrX:17715080-17715200 5.3e-05 98_[+5]_14 chr2L:13918505-13918625 5.3e-05 94_[+5]_18 chr3L:1212252-1212372 5.3e-05 97_[+5]_15 chr2R:8253914-8254034 5.3e-05 107_[+5]_5 chr2R:18913000-18913120 6e-05 60_[+5]_52 chrX:8258737-8258857 6.9e-05 27_[+5]_85 chr3R:16666056-16666176 6.9e-05 24_[+5]_88 chr2L:19944807-19944927 6.9e-05 46_[+5]_66 chr3L:14743430-14743550 7.8e-05 67_[+5]_45 chr3L:2148813-2148933 7.8e-05 22_[+5]_90 chr3R:24216163-24216283 9.1e-05 34_[+5]_78 chr3R:15436961-15437081 9.1e-05 94_[+5]_18 chr2R:18108899-18109019 0.0001 57_[+5]_55 chr2L:7086715-7086835 0.00013 98_[+5]_14 chrX:5787003-5787123 0.00013 19_[+5]_93 chr3R:6237843-6237963 0.00013 80_[+5]_32 chr2R:24585599-24585719 0.00017 101_[+5]_11 chrX:8841588-8841708 0.00017 38_[+5]_74 chr2R:18925871-18925991 0.00017 95_[+5]_17 chr3R:16594181-16594301 0.00017 99_[+5]_13 chr2R:8987014-8987134 0.0002 38_[+5]_74 chr3L:17938761-17938881 0.0002 72_[+5]_40 chrX:12002711-12002831 0.00024 89_[+5]_23 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGB MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCTGB width=8 seqs=37 chr3L:4304378-4304498 ( 25) GCTGCTGC 1 chr2L:19112334-19112454 ( 15) GCTGCTGC 1 chr2L:10781391-10781511 ( 86) GCTGCTGC 1 chr3R:11661326-11661446 ( 3) GCTGCTGT 1 chr3L:4296928-4297048 ( 105) GCTGCTGT 1 chrX:10216773-10216893 ( 36) GCTGCTGG 1 chr3R:24712468-24712588 ( 91) GCTGCTGG 1 chrX:22511692-22511812 ( 22) GCTGCTGG 1 chr2R:23443930-23444050 ( 69) GCTGCTGG 1 chr2R:14319610-14319730 ( 6) GCTGCTGG 1 chr3R:9879425-9879545 ( 3) GCCGCTGC 1 chr2R:7284644-7284764 ( 1) GCCGCTGC 1 chrX:18673039-18673159 ( 64) GCCGCTGT 1 chrX:3885970-3886090 ( 5) GCTGCCGC 1 chrX:17715080-17715200 ( 99) GCCGCTGT 1 chr2L:13918505-13918625 ( 95) GCTGCCGC 1 chr3L:1212252-1212372 ( 98) GCCGCTGT 1 chr2R:8253914-8254034 ( 108) GCCGCTGT 1 chr2R:18913000-18913120 ( 61) GCCGCTGG 1 chrX:8258737-8258857 ( 28) GCTGCTCC 1 chr3R:16666056-16666176 ( 25) GCTGCTCC 1 chr2L:19944807-19944927 ( 47) GCTGCTCC 1 chr3L:14743430-14743550 ( 68) GCTGCCGT 1 chr3L:2148813-2148933 ( 23) GCTGCCGT 1 chr3R:24216163-24216283 ( 35) GCCGCCGC 1 chr3R:15436961-15437081 ( 95) GCTGCCGG 1 chr2R:18108899-18109019 ( 58) GCTGCTCT 1 chr2L:7086715-7086835 ( 99) GCTGTTGC 1 chrX:5787003-5787123 ( 20) GCTGTTGC 1 chr3R:6237843-6237963 ( 81) GCTGTTGC 1 chr2R:24585599-24585719 ( 102) GCCGCTCT 1 chrX:8841588-8841708 ( 39) GCTGCCCC 1 chr2R:18925871-18925991 ( 96) GCTGTTGT 1 chr3R:16594181-16594301 ( 100) GCTGTTGT 1 chr2R:8987014-8987134 ( 39) GCCGCTCG 1 chr3L:17938761-17938881 ( 73) GCCGTTGC 1 chrX:12002711-12002831 ( 90) GCTGCCCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGB MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3794 E= 4.4e+001 -1185 -1185 216 -1185 -1185 218 -1185 -1185 -1185 43 -1185 137 -1185 -1185 216 -1185 -1185 192 -1185 -75 -1185 -3 -1185 153 -1185 -3 181 -1185 -1185 97 12 25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGB MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 4.4e+001 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.297297 0.000000 0.702703 0.000000 0.000000 1.000000 0.000000 0.000000 0.837838 0.000000 0.162162 0.000000 0.216216 0.000000 0.783784 0.000000 0.216216 0.783784 0.000000 0.000000 0.432432 0.243243 0.324324 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCTGB MEME-5 regular expression -------------------------------------------------------------------------------- GC[TC]GC[TC][GC][CTG] -------------------------------------------------------------------------------- Time 30.22 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:10781391-10781511 2.78e-05 85_[+5(8.98e-06)]_27 chr3L:5608925-5609045 9.74e-05 37_[+2(6.03e-05)]_54_[+4(1.32e-05)]_\ 13 chrX:1856757-1856877 1.49e-06 3_[+1(3.00e-05)]_9_[+4(4.62e-05)]_\ 48_[+2(1.96e-05)]_36 chr3L:16704371-16704491 2.06e-02 120 chrX:11757031-11757151 4.06e-03 85_[+3(7.66e-05)]_7_[+2(6.03e-05)]_\ 12 chr3L:16340023-16340143 2.07e-02 120 chr2L:11502862-11502982 1.89e-05 92_[+1(1.67e-05)]_20 chr3R:10149812-10149932 1.71e-03 71_[+2(1.96e-05)]_41 chr3L:13381320-13381440 2.74e-06 37_[+4(1.32e-05)]_17_[+3(5.67e-05)]_\ 50 chr2R:7311029-7311149 1.08e-01 120 chrX:1304152-1304272 3.58e-03 24_[+1(1.67e-05)]_88 chr2L:7861868-7861988 5.36e-03 29_[+1(1.67e-05)]_83 chr2R:8253914-8254034 7.24e-03 107_[+5(5.27e-05)]_5 chr3R:4961037-4961157 2.62e-03 76_[+2(1.96e-05)]_36 chr2R:11953609-11953729 2.17e-02 120 chr2L:18518996-18519116 2.98e-04 40_[+1(1.67e-05)]_72 chr3L:2397927-2398047 6.85e-01 120 chr2R:9013620-9013740 1.38e-02 73_[+3(2.54e-05)]_39 chr3R:24778357-24778477 2.82e-04 6_[+3(7.66e-05)]_23_[+4(4.62e-05)]_\ 75 chr3R:31477306-31477426 9.41e-03 120 chr3R:8970846-8970966 4.59e-02 86_[+2(6.03e-05)]_26 chr3R:16594181-16594301 5.97e-04 49_[+1(1.67e-05)]_63 chr3R:7159741-7159861 2.21e-02 60_[+1(8.74e-05)]_52 chr3L:7821314-7821434 4.01e-04 52_[+2(1.96e-05)]_60 chr3R:6097165-6097285 1.38e-02 68_[+3(2.54e-05)]_44 chr3R:6227136-6227256 8.11e-03 63_[+4(1.32e-05)]_49 chrX:17255816-17255936 1.24e-05 48_[+2(1.96e-05)]_64 chr2R:24758129-24758249 1.22e-02 120 chr2R:7284644-7284764 1.29e-04 [+5(3.64e-05)]_11_[+1(1.67e-05)]_93 chr3L:9569333-9569453 1.53e-02 120 chr3L:13250192-13250312 4.54e-06 47_[+3(2.54e-05)]_22_[+1(1.67e-05)]_\ 35 chr3L:14429097-14429217 6.68e-04 72_[+4(3.00e-05)]_40 chr2L:14687498-14687618 1.34e-03 102_[+2(3.55e-05)]_10 chr3L:1212252-1212372 1.48e-03 66_[+1(5.05e-05)]_23_[+5(5.27e-05)]_\ 15 chr3L:16546298-16546418 2.35e-02 60_[+3(2.54e-05)]_28_[+3(5.67e-05)]_\ 16 chrX:2363863-2363983 4.92e-02 54_[+2(1.96e-05)]_58 chrX:19163585-19163705 1.64e-05 19_[+1(1.67e-05)]_36_[+1(1.67e-05)]_\ 49 chr3R:9879425-9879545 3.05e-06 2_[+5(3.64e-05)]_15_[+1(5.05e-05)]_\ 2_[+4(6.68e-05)]_77 chr3R:21700607-21700727 3.76e-02 68_[+3(5.67e-05)]_44 chr2R:18898290-18898410 1.66e-02 58_[+1(5.05e-05)]_54 chr2R:7295339-7295459 6.48e-03 36_[+2(6.03e-05)]_76 chr3L:13169419-13169539 9.87e-03 101_[+2(6.03e-05)]_11 chr2R:14319610-14319730 6.17e-04 5_[+5(3.64e-05)]_48_[+1(5.05e-05)]_\ 51 chr3R:23785427-23785547 6.00e-03 65_[+2(1.96e-05)]_47 chr2R:24259504-24259624 6.50e-03 78_[+2(1.96e-05)]_34 chr2R:23874228-23874348 5.98e-03 120 chr2L:14179530-14179650 6.08e-02 120 chr3R:31245927-31246047 3.47e-03 39_[+1(8.74e-05)]_73 chr3L:3274911-3275031 1.15e-04 36_[+1(1.67e-05)]_76 chr2R:8999686-8999806 1.09e-03 52_[+4(3.00e-05)]_11_[+1(8.74e-05)]_\ 41 chr3R:4811273-4811393 5.75e-02 120 chrX:2991071-2991191 7.36e-03 120 chr3R:23734710-23734830 3.15e-03 76_[+2(6.03e-05)]_36 chrX:14894011-14894131 7.72e-03 34_[+3(2.54e-05)]_46_[+2(1.96e-05)]_\ 24 chrX:11842118-11842238 3.49e-04 21_[+4(3.00e-05)]_56_[+3(5.67e-05)]_\ 27 chrX:17181371-17181491 2.76e-02 54_[+2(1.96e-05)]_58 chrX:13192378-13192498 6.75e-03 102_[+1(1.67e-05)]_10 chr2R:7747630-7747750 7.26e-03 120 chr2L:19944807-19944927 6.88e-04 46_[+5(6.89e-05)]_27_[+1(6.68e-05)]_\ 31 chr3L:17938761-17938881 2.27e-04 60_[+4(1.32e-05)]_52 chr3L:4533359-4533479 2.24e-02 78_[+3(2.54e-05)]_34 chr3R:6245107-6245227 6.52e-03 33_[+2(1.96e-05)]_79 chr3L:16433695-16433815 3.30e-03 9_[+1(1.67e-05)]_23_[+1(1.67e-05)]_\ 72 chr3L:516683-516803 3.36e-03 26_[+3(2.54e-05)]_46_[+2(1.96e-05)]_\ 32 chr2R:7985826-7985946 7.59e-02 120 chr3L:21558611-21558731 4.61e-06 44_[+2(6.03e-05)]_39_[+4(1.32e-05)]_\ 21 chr3R:10154096-10154216 2.10e-02 1_[+4(4.62e-05)]_111 chrX:9224562-9224682 1.21e-02 120 chrX:12001146-12001266 1.19e-02 44_[+4(3.00e-05)]_68 chr2L:13949928-13950048 4.42e-02 83_[+1(8.74e-05)]_29 chr3R:6237843-6237963 3.83e-03 120 chr2R:18925871-18925991 3.58e-03 63_[+2(6.03e-05)]_49 chr2R:16089765-16089885 2.47e-04 42_[+1(3.00e-05)]_70 chr3R:24202850-24202970 2.52e-02 62_[+2(1.96e-05)]_50 chrX:5787003-5787123 5.22e-04 64_[+2(3.55e-05)]_48 chr3R:24714550-24714670 1.16e-03 83_[+1(1.67e-05)]_29 chr3L:3105988-3106108 3.39e-03 65_[+2(3.55e-05)]_47 chr2L:20368712-20368832 3.07e-02 35_[+4(6.68e-05)]_77 chr2L:1665546-1665666 2.35e-02 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chr3L:21741169-21741289 2.80e-02 31_[+1(3.00e-05)]_81 chr2L:18619338-18619458 3.37e-05 38_[+4(1.32e-05)]_38_[+3(7.66e-05)]_\ 28 chr3R:4475519-4475639 1.79e-02 27_[+3(2.54e-05)]_85 chr3L:4309349-4309469 9.86e-02 120 chrX:2279958-2280078 3.16e-02 15_[+3(2.54e-05)]_38_[+3(2.54e-05)]_\ 51 chrX:12453862-12453982 4.05e-02 20_[+4(6.68e-05)]_92 chr3L:16406883-16407003 1.56e-02 71_[+2(1.96e-05)]_41 chrX:1100483-1100603 1.71e-03 42_[+3(5.67e-05)]_3_[+3(5.67e-05)]_\ 59 chrX:22512221-22512341 2.17e-03 120 chrX:12501572-12501692 4.76e-04 72_[+2(6.03e-05)]_40 chrX:5297232-5297352 3.90e-03 120 chr3L:4296928-4297048 1.75e-03 104_[+5(2.00e-05)]_8 chrX:10089060-10089180 2.10e-02 63_[+2(1.96e-05)]_49 chr3R:15436961-15437081 7.48e-02 94_[+5(9.12e-05)]_18 chrX:8882970-8883090 1.94e-03 51_[+1(6.68e-05)]_61 chr3L:13027010-13027130 7.14e-04 59_[+4(1.32e-05)]_53 chrX:8841588-8841708 3.19e-01 120 chr2R:23873098-23873218 4.76e-03 31_[+2(1.96e-05)]_81 chr3L:2148813-2148933 1.20e-03 22_[+5(7.79e-05)]_36_[+4(4.62e-05)]_\ 46 chr3R:13913683-13913803 6.07e-03 40_[+2(1.96e-05)]_72 chr3L:4269332-4269452 5.05e-04 93_[+1(1.67e-05)]_19 chr3R:20969572-20969692 4.21e-03 32_[+4(3.00e-05)]_21_[+4(1.32e-05)]_\ 19_[+1(1.67e-05)]_24 chr2R:14420766-14420886 5.75e-03 78_[+2(1.96e-05)]_34 chr3L:16656247-16656367 1.52e-03 76_[+1(1.67e-05)]_36 chr3R:15430463-15430583 6.63e-01 120 chr2L:14169792-14169912 1.30e-03 60_[+2(3.55e-05)]_43_[+2(1.96e-05)]_\ 1 chrX:16617461-16617581 4.55e-03 36_[+1(1.67e-05)]_76 chr2R:10069712-10069832 5.32e-03 54_[+1(1.67e-05)]_58 chr2R:15739479-15739599 9.91e-05 61_[+1(1.67e-05)]_51 chr3L:21291220-21291340 1.79e-02 120 chr2R:23443930-23444050 1.28e-04 49_[+1(1.67e-05)]_11_[+5(3.64e-05)]_\ 44 chr2R:24325453-24325573 8.68e-02 120 chr3R:9217746-9217866 3.50e-03 39_[+3(5.67e-05)]_73 chr3R:11661326-11661446 3.03e-05 2_[+5(2.00e-05)]_110 chr3L:4302635-4302755 4.42e-03 58_[+2(1.96e-05)]_54 chr3L:14743430-14743550 1.50e-04 31_[+4(6.68e-05)]_28_[+5(7.79e-05)]_\ 45 chrX:9647219-9647339 1.28e-02 59_[+4(3.00e-05)]_53 chr3R:31528778-31528898 1.90e-04 20_[+4(4.62e-05)]_15_[+3(2.54e-05)]_\ 69 chr3R:21857203-21857323 4.27e-04 96_[+2(1.96e-05)]_16 chr3R:24773183-24773303 9.74e-03 120 chrX:8893507-8893627 2.42e-05 19_[+1(1.67e-05)]_93 chr3L:6255380-6255500 1.83e-02 33_[+1(1.67e-05)]_79 chr2L:14207273-14207393 5.96e-02 120 chrX:5783397-5783517 5.07e-02 32_[+2(3.55e-05)]_80 chr2R:18786150-18786270 3.29e-01 120 chr2R:16020753-16020873 7.73e-02 120 chr3L:17488729-17488849 1.19e-01 120 chrX:13819830-13819950 2.76e-03 63_[+4(3.00e-05)]_49 chr3L:8772342-8772462 1.31e-01 120 chr3R:4127637-4127757 3.12e-02 30_[+1(5.05e-05)]_82 chr3R:28684944-28685064 1.50e-03 42_[+3(5.67e-05)]_70 chr3R:29893169-29893289 2.16e-01 120 chrX:14486858-14486978 9.62e-02 38_[+4(3.00e-05)]_74 chr2R:17397319-17397439 1.60e-02 60_[+3(2.54e-05)]_52 chr3L:17960386-17960506 1.63e-02 38_[+3(2.54e-05)]_74 chrX:22511692-22511812 4.23e-04 21_[+5(3.64e-05)]_59_[+1(1.67e-05)]_\ 24 chr3L:22417906-22418026 1.04e-03 56_[+1(1.67e-05)]_56 chr3L:21301903-21302023 1.14e-03 66_[+4(1.32e-05)]_46 chr3L:4304378-4304498 2.37e-05 24_[+5(8.98e-06)]_11_[+3(7.66e-05)]_\ 69 chr3L:21647975-21648095 3.57e-03 55_[+1(1.67e-05)]_57 chr3R:31558818-31558938 7.92e-01 120 chr2R:17621724-17621844 3.47e-03 90_[+2(1.96e-05)]_22 chrX:14173560-14173680 6.63e-02 120 chrX:17513399-17513519 1.14e-02 112_[+2(1.96e-05)] chr2R:6193021-6193141 3.00e-02 11_[+1(1.67e-05)]_101 chrX:17715080-17715200 3.27e-03 98_[+5(5.27e-05)]_14 chr3L:1755056-1755176 3.42e-03 64_[+1(1.67e-05)]_48 chr2L:14641539-14641659 1.47e-02 78_[+3(5.67e-05)]_34 chr3L:6785369-6785489 4.74e-03 36_[+2(1.96e-05)]_13_[+2(6.03e-05)]_\ 55 chr3L:17935148-17935268 9.62e-01 120 chr2R:5900636-5900756 4.95e-03 47_[+4(6.68e-05)]_65 chr3R:24968154-24968274 2.73e-03 24_[+2(1.96e-05)]_88 chr3R:31483199-31483319 1.24e-01 120 chr3L:8294729-8294849 1.80e-02 120 chr3R:31500246-31500366 7.25e-02 88_[+3(5.67e-05)]_24 chr2L:3630905-3631025 3.47e-02 63_[+2(1.96e-05)]_49 chr3L:2437710-2437830 4.33e-05 37_[+1(3.00e-05)]_75 chr3R:15436337-15436457 1.28e-02 41_[+3(2.54e-05)]_71 chr3R:31542054-31542174 2.18e-04 33_[+2(3.55e-05)]_79 chr3R:16543175-16543295 3.60e-05 65_[+2(1.96e-05)]_47 chr2R:13926936-13927056 2.58e-02 120 chr2R:23056004-23056124 4.88e-03 65_[+2(1.96e-05)]_47 chr3R:28827335-28827455 2.66e-02 45_[+4(8.02e-05)]_67 chr2R:22900503-22900623 6.07e-05 2_[+2(1.96e-05)]_110 chr3L:6268490-6268610 5.08e-02 120 chr2L:8735137-8735257 5.38e-05 53_[+1(1.67e-05)]_59 chr3R:31327982-31328102 4.46e-02 120 chr3L:21117599-21117719 1.02e-02 73_[+2(1.96e-05)]_39 chr2L:14668539-14668659 1.73e-03 1_[+1(6.68e-05)]_111 chrX:15172010-15172130 1.80e-02 1_[+2(1.96e-05)]_111 chr3L:5599781-5599901 8.17e-02 120 chr3R:8946543-8946663 1.23e-02 42_[+2(6.03e-05)]_70 chrX:4662352-4662472 5.39e-05 33_[+3(2.54e-05)]_15_[+2(6.03e-05)]_\ 56 chr2L:7004308-7004428 4.05e-03 120 chr3R:12666345-12666465 2.43e-03 66_[+2(3.55e-05)]_[+3(5.67e-05)]_38 chrX:15170729-15170849 2.74e-03 9_[+2(6.03e-05)]_103 chr3R:24216163-24216283 4.28e-04 31_[+5(9.12e-05)]_9_[+2(1.96e-05)]_\ 64 chr3L:16466656-16466776 4.05e-02 37_[+1(8.74e-05)]_75 chr3L:3352692-3352812 3.24e-02 120 chr2R:11943416-11943536 1.06e-01 120 chrX:1312665-1312785 6.39e-04 120 chr3R:24712468-24712588 1.60e-04 1_[+4(1.32e-05)]_39_[+4(4.62e-05)]_\ 34_[+5(3.64e-05)]_22 chrX:10216773-10216893 6.21e-05 5_[+4(4.62e-05)]_22_[+5(3.64e-05)]_\ 77 chrX:5781900-5782020 1.91e-02 79_[+1(3.00e-05)]_33 chr2R:18108899-18109019 3.33e-03 120 chr3L:16271035-16271155 6.77e-05 28_[+1(6.68e-05)]_21_[+3(2.54e-05)]_\ 55 chr2R:5880582-5880702 6.00e-04 46_[+1(1.67e-05)]_66 chr3R:6240402-6240522 3.06e-02 36_[+4(4.62e-05)]_76 chr2R:18238879-18238999 9.22e-03 57_[+1(6.68e-05)]_55 chr2R:8987014-8987134 6.66e-04 18_[+1(1.67e-05)]_94 chr3R:11608605-11608725 3.02e-04 53_[+4(1.32e-05)]_59 chr2R:24585599-24585719 1.04e-02 120 chr3R:29719160-29719280 1.96e-03 57_[+1(1.67e-05)]_55 chr2L:11505038-11505158 6.66e-03 120 chr3R:16666056-16666176 1.85e-05 24_[+5(6.89e-05)]_38_[+2(6.03e-05)]_\ 42 chrX:3885970-3886090 2.69e-03 4_[+5(5.27e-05)]_108 chr3L:3108355-3108475 6.51e-03 91_[+2(3.55e-05)]_21 chrX:11759631-11759751 7.58e-04 38_[+2(6.03e-05)]_74 chr2R:17635502-17635622 4.25e-04 36_[+4(4.62e-05)]_29_[+1(1.67e-05)]_\ 39 chr2R:9969594-9969714 5.38e-03 70_[+1(1.67e-05)]_[+4(8.02e-05)]_34 chr3R:6226313-6226433 2.93e-02 120 chr2L:8861579-8861699 3.31e-03 66_[+1(1.67e-05)]_46 chrX:8258737-8258857 5.07e-03 27_[+5(6.89e-05)]_85 chr3R:21094431-21094551 1.98e-01 120 chr3R:12360031-12360151 3.46e-04 96_[+3(5.67e-05)]_1_[+4(6.68e-05)]_\ 7 chrX:11724857-11724977 1.84e-03 28_[+1(1.67e-05)]_84 chr3R:21067053-21067173 7.51e-04 67_[+4(3.00e-05)]_45 chrX:22857251-22857371 3.33e-02 69_[+1(5.05e-05)]_15_[+1(1.67e-05)]_\ 20 chr3R:31559020-31559140 5.87e-03 101_[+4(4.62e-05)]_11 chr2L:10663144-10663264 6.33e-03 120 chr2R:7744467-7744587 8.65e-04 47_[+2(6.03e-05)]_65 chr2L:4801855-4801975 2.00e-02 54_[+3(2.54e-05)]_58 chr2R:18913833-18913953 2.13e-02 75_[+2(1.96e-05)]_37 chr3R:6102865-6102985 6.22e-05 69_[+4(1.32e-05)]_43 chr3L:21704263-21704383 4.58e-03 120 chr3L:18988189-18988309 8.75e-04 84_[+3(2.54e-05)]_28 chr2L:10515954-10516074 1.56e-03 40_[+4(8.02e-05)]_72 chr2R:12566692-12566812 1.63e-02 47_[+4(9.72e-05)]_65 chr2R:23784758-23784878 7.50e-03 20_[+1(1.67e-05)]_92 chrX:12002711-12002831 1.43e-03 120 chr2L:8287015-8287135 2.47e-01 53_[+3(5.67e-05)]_59 chrX:17586050-17586170 2.70e-02 120 chr3R:23307932-23308052 4.14e-04 12_[+2(1.96e-05)]_100 chr3R:13816860-13816980 9.97e-03 97_[+2(3.55e-05)]_15 chr2L:7086715-7086835 5.20e-05 65_[+2(1.96e-05)]_47 chrX:18673039-18673159 2.64e-03 8_[+4(4.62e-05)]_47_[+5(5.27e-05)]_\ 49 chr3R:7147113-7147233 4.22e-03 46_[+2(6.03e-05)]_66 chr3R:19033544-19033664 5.61e-03 120 chr2R:16796492-16796612 2.87e-02 120 chr2R:20158739-20158859 2.52e-03 120 chr2L:4799597-4799717 3.86e-02 73_[+1(5.05e-05)]_39 chr3R:6688323-6688443 5.12e-03 120 chr3R:6153713-6153833 3.62e-02 27_[+1(1.67e-05)]_85 chr3L:7106531-7106651 4.30e-05 26_[+4(1.32e-05)]_86 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n08.farnam.hpc.yale.internal ********************************************************************************