******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/B-H2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:17330755-17330875 1.0000 120 chr3R:8815416-8815536 1.0000 120 chr2R:14485855-14485975 1.0000 120 chr3L:1964868-1964988 1.0000 120 chrX:17330068-17330188 1.0000 120 chr3L:7116100-7116220 1.0000 120 chr2R:7729962-7730082 1.0000 120 chr3L:14789839-14789959 1.0000 120 chr2L:4928530-4928650 1.0000 120 chr3L:19961922-19962042 1.0000 120 chr2R:9556631-9556751 1.0000 120 chr3L:5359427-5359547 1.0000 120 chr3L:16877136-16877256 1.0000 120 chr2R:9950236-9950356 1.0000 120 chr2R:9428778-9428898 1.0000 120 chr2R:7926439-7926559 1.0000 120 chr2L:4456845-4456965 1.0000 120 chr3L:12803460-12803580 1.0000 120 chr3R:17063907-17064027 1.0000 120 chr3R:9334657-9334777 1.0000 120 chr2R:16225561-16225681 1.0000 120 chr3L:630807-630927 1.0000 120 chr3R:11968345-11968465 1.0000 120 chr3R:29116292-29116412 1.0000 120 chr3L:17001199-17001319 1.0000 120 chr2R:9429549-9429669 1.0000 120 chr2R:10079898-10080018 1.0000 120 chr3R:31420736-31420856 1.0000 120 chr2R:14573139-14573259 1.0000 120 chr3R:13802313-13802433 1.0000 120 chr2L:6085823-6085943 1.0000 120 chr4:156065-156185 1.0000 120 chr2R:10437368-10437488 1.0000 120 chr2L:5945684-5945804 1.0000 120 chr2L:19389971-19390091 1.0000 120 chr2R:19125606-19125726 1.0000 120 chr2R:10151172-10151292 1.0000 120 chr3L:11532094-11532214 1.0000 120 chr2R:16869371-16869491 1.0000 120 chrX:17345942-17346062 1.0000 120 chr3L:18998107-18998227 1.0000 120 chr3R:31608144-31608264 1.0000 120 chr2R:22205671-22205791 1.0000 120 chr2R:14873701-14873821 1.0000 120 chr3L:15959022-15959142 1.0000 120 chr2L:16530207-16530327 1.0000 120 chr2R:6518866-6518986 1.0000 120 chr2L:12473861-12473981 1.0000 120 chr2L:20773854-20773974 1.0000 120 chr2L:20830133-20830253 1.0000 120 chrX:13749957-13750077 1.0000 120 chr2L:20831179-20831299 1.0000 120 chr3R:21582865-21582985 1.0000 120 chr2R:22247772-22247892 1.0000 120 chr2R:14219225-14219345 1.0000 120 chr3L:9304581-9304701 1.0000 120 chrX:17313483-17313603 1.0000 120 chr3R:21163437-21163557 1.0000 120 chr2R:10045471-10045591 1.0000 120 chrX:20661789-20661909 1.0000 120 chr3R:12443877-12443997 1.0000 120 chr3R:12716393-12716513 1.0000 120 chrX:9600920-9601040 1.0000 120 chr3R:11689957-11690077 1.0000 120 chr3R:24102532-24102652 1.0000 120 chrX:18511007-18511127 1.0000 120 chr3R:14568921-14569041 1.0000 120 chr3R:31722082-31722202 1.0000 120 chr3L:11291302-11291422 1.0000 120 chr2L:20796933-20797053 1.0000 120 chr2R:21214869-21214989 1.0000 120 chr3L:19902728-19902848 1.0000 120 chr3L:20000335-20000455 1.0000 120 chrX:17290422-17290542 1.0000 120 chr3R:19621067-19621187 1.0000 120 chr2L:5117245-5117365 1.0000 120 chr3R:32022193-32022313 1.0000 120 chr2L:20840576-20840696 1.0000 120 chr2R:11901802-11901922 1.0000 120 chr2L:8277008-8277128 1.0000 120 chr2R:13937246-13937366 1.0000 120 chr3L:8121728-8121848 1.0000 120 chr3L:20386158-20386278 1.0000 120 chr2R:23057682-23057802 1.0000 120 chrX:13396097-13396217 1.0000 120 chr3R:30056118-30056238 1.0000 120 chr3L:10370482-10370602 1.0000 120 chr3L:17049972-17050092 1.0000 120 chr3L:4283753-4283873 1.0000 120 chr2R:8749283-8749403 1.0000 120 chr2R:18531274-18531394 1.0000 120 chrX:12469314-12469434 1.0000 120 chr2R:7749775-7749895 1.0000 120 chr2L:8203088-8203208 1.0000 120 chr2R:24779812-24779932 1.0000 120 chr3L:18895184-18895304 1.0000 120 chr2R:16017702-16017822 1.0000 120 chr3R:21276273-21276393 1.0000 120 chr3L:5569889-5570009 1.0000 120 chr3L:1819099-1819219 1.0000 120 chr3R:8807900-8808020 1.0000 120 chr4:60088-60208 1.0000 120 chr3L:3236412-3236532 1.0000 120 chr3R:8814407-8814527 1.0000 120 chr2L:12464250-12464370 1.0000 120 chr3L:15689703-15689823 1.0000 120 chr2L:1125519-1125639 1.0000 120 chr3R:26185407-26185527 1.0000 120 chr2L:5151608-5151728 1.0000 120 chr3R:9001903-9002023 1.0000 120 chrX:13333305-13333425 1.0000 120 chr3L:17804675-17804795 1.0000 120 chr2R:20654960-20655080 1.0000 120 chr2R:22644733-22644853 1.0000 120 chr3R:9008372-9008492 1.0000 120 chr2R:11295262-11295382 1.0000 120 chr3R:30423860-30423980 1.0000 120 chr3L:16356432-16356552 1.0000 120 chr3R:11760028-11760148 1.0000 120 chr2L:14410400-14410520 1.0000 120 chr4:70321-70441 1.0000 120 chr2L:8198874-8198994 1.0000 120 chr2R:9544179-9544299 1.0000 120 chrX:17314333-17314453 1.0000 120 chr2L:21219760-21219880 1.0000 120 chr2R:24399447-24399567 1.0000 120 chr2R:24963286-24963406 1.0000 120 chr3L:7423532-7423652 1.0000 120 chr2L:2348640-2348760 1.0000 120 chr3L:2457907-2458027 1.0000 120 chr2L:17368649-17368769 1.0000 120 chr2R:23611942-23612062 1.0000 120 chr3R:18296264-18296384 1.0000 120 chr2L:6868406-6868526 1.0000 120 chrX:10621796-10621916 1.0000 120 chr3R:5503927-5504047 1.0000 120 chr3L:12203831-12203951 1.0000 120 chr3R:17687083-17687203 1.0000 120 chr3L:17913325-17913445 1.0000 120 chr3R:27905890-27906010 1.0000 120 chr3R:31220535-31220655 1.0000 120 chr3L:11285762-11285882 1.0000 120 chr3L:12675398-12675518 1.0000 120 chr3L:19813462-19813582 1.0000 120 chr3L:548989-549109 1.0000 120 chr3R:14051638-14051758 1.0000 120 chr2L:155238-155358 1.0000 120 chr3L:17539065-17539185 1.0000 120 chr2R:20603311-20603431 1.0000 120 chr3R:21584654-21584774 1.0000 120 chr2R:16289299-16289419 1.0000 120 chr3L:10893264-10893384 1.0000 120 chrX:12756496-12756616 1.0000 120 chr2L:9176928-9177048 1.0000 120 chr3L:17006412-17006532 1.0000 120 chr2R:15846401-15846521 1.0000 120 chr2R:10617666-10617786 1.0000 120 chrX:6439641-6439761 1.0000 120 chr2L:8570585-8570705 1.0000 120 chr2L:295028-295148 1.0000 120 chr3R:17065646-17065766 1.0000 120 chr2R:15480295-15480415 1.0000 120 chr2R:9814207-9814327 1.0000 120 chr3R:30198966-30199086 1.0000 120 chr2L:12096444-12096564 1.0000 120 chr3L:18743797-18743917 1.0000 120 chr3R:7515912-7516032 1.0000 120 chr3L:21892332-21892452 1.0000 120 chr3R:25245595-25245715 1.0000 120 chr2R:16849565-16849685 1.0000 120 chr3R:21206848-21206968 1.0000 120 chr3R:19223546-19223666 1.0000 120 chr2L:85225-85345 1.0000 120 chr3R:18243707-18243827 1.0000 120 chrX:11807099-11807219 1.0000 120 chr3R:29723254-29723374 1.0000 120 chr2L:7218116-7218236 1.0000 120 chr3L:1318346-1318466 1.0000 120 chr3R:16256261-16256381 1.0000 120 chr2L:3779495-3779615 1.0000 120 chrX:11349891-11350011 1.0000 120 chr3L:18994689-18994809 1.0000 120 chr3R:14513622-14513742 1.0000 120 chr2L:273737-273857 1.0000 120 chrX:2140636-2140756 1.0000 120 chr2R:13168016-13168136 1.0000 120 chr3L:9333881-9334001 1.0000 120 chr3R:27274646-27274766 1.0000 120 chr4:558833-558953 1.0000 120 chr3L:17644304-17644424 1.0000 120 chrX:15802994-15803114 1.0000 120 chrX:17293565-17293685 1.0000 120 chr3R:22794107-22794227 1.0000 120 chr2L:4973879-4973999 1.0000 120 chr3L:5749779-5749899 1.0000 120 chr3R:5746794-5746914 1.0000 120 chrX:13310875-13310995 1.0000 120 chr2R:20252189-20252309 1.0000 120 chr3L:3903350-3903470 1.0000 120 chr2R:16850262-16850382 1.0000 120 chr3R:16211357-16211477 1.0000 120 chr3R:6382818-6382938 1.0000 120 chr2L:9522829-9522949 1.0000 120 chr2L:9498733-9498853 1.0000 120 chr3R:25249215-25249335 1.0000 120 chr2R:14265619-14265739 1.0000 120 chr2R:19462475-19462595 1.0000 120 chr3L:7865961-7866081 1.0000 120 chr3L:9729928-9730048 1.0000 120 chr3L:18833369-18833489 1.0000 120 chr2R:9098463-9098583 1.0000 120 chr2L:16790880-16791000 1.0000 120 chrX:17305677-17305797 1.0000 120 chr3L:17008967-17009087 1.0000 120 chr2R:7049029-7049149 1.0000 120 chr2R:23043072-23043192 1.0000 120 chr3R:5063282-5063402 1.0000 120 chr3L:5608297-5608417 1.0000 120 chr3L:10698219-10698339 1.0000 120 chr2R:22390355-22390475 1.0000 120 chr3R:23161483-23161603 1.0000 120 chr3R:25652231-25652351 1.0000 120 chr2R:16772631-16772751 1.0000 120 chr3L:7862475-7862595 1.0000 120 chr3L:8338983-8339103 1.0000 120 chr2L:12004693-12004813 1.0000 120 chr3L:16002648-16002768 1.0000 120 chr4:1218913-1219033 1.0000 120 chr3R:20549109-20549229 1.0000 120 chr2R:14258919-14259039 1.0000 120 chr2R:17098531-17098651 1.0000 120 chr4:416506-416626 1.0000 120 chr3R:21198179-21198299 1.0000 120 chr2L:9182731-9182851 1.0000 120 chrX:11379273-11379393 1.0000 120 chr3L:7860690-7860810 1.0000 120 chr3R:11822445-11822565 1.0000 120 chrX:22449331-22449451 1.0000 120 chr3L:8449316-8449436 1.0000 120 chr3L:18901498-18901618 1.0000 120 chr2R:22789426-22789546 1.0000 120 chrX:13403750-13403870 1.0000 120 chr2L:143232-143352 1.0000 120 chr3L:14055857-14055977 1.0000 120 chr3L:203714-203834 1.0000 120 chr3R:26945408-26945528 1.0000 120 chr2R:8150794-8150914 1.0000 120 chr2L:18119839-18119959 1.0000 120 chr3R:22527252-22527372 1.0000 120 chr3R:24938239-24938359 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_B-H2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/B-H2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.291 C 0.214 G 0.21 T 0.285 Background letter frequencies (from file dataset with add-one prior applied): A 0.291 C 0.214 G 0.21 T 0.285 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TTTATGGC MEME-1 width = 8 sites = 22 llr = 211 E-value = 2.1e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTATGGC MEME-1 Description -------------------------------------------------------------------------------- Simplified A :::a:2:: pos.-specific C :::::::9 probability G :::::7a1 matrix T aaa:a1:: bits 2.3 * 2.0 * 1.8 ***** * 1.6 ***** ** Relative 1.4 ***** ** Entropy 1.1 ***** ** (13.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTATGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:14258919-14259039 59 1.81e-05 CAGTCGGCGA TTTATGGC TGCAGCAATT chr2R:22390355-22390475 64 1.81e-05 TGAACCTGAC TTTATGGC CTGCGGTAAT chr2R:7049029-7049149 68 1.81e-05 CTCCAAGTCA TTTATGGC CGTATACATA chr3L:18994689-18994809 94 1.81e-05 CTATGTGTAG TTTATGGC AGCCTCTTCA chr3L:21892332-21892452 42 1.81e-05 TTACCACATT TTTATGGC GCTTGTACCC chr3L:18743797-18743917 80 1.81e-05 GAAGTATACT TTTATGGC ATAGAACTTG chr3R:17065646-17065766 107 1.81e-05 ATTTAGCTTT TTTATGGC ATTGTA chr2R:15846401-15846521 51 1.81e-05 TAGTATAAAC TTTATGGC TTACTATTTA chrX:17290422-17290542 46 1.81e-05 GACTGTGGAA TTTATGGC TCACTGGTTG chr2R:22205671-22205791 86 1.81e-05 TTATGAATAT TTTATGGC CTTTGAGTCA chr2R:9428778-9428898 37 1.81e-05 TTTACAAGCA TTTATGGC CATCCAATAG chrX:17330755-17330875 105 1.81e-05 TTTTAACACT TTTATGGC GTTAAGTT chr2R:20252189-20252309 74 4.32e-05 AAAGAGGTGT TTTATAGC ACATTGGCAT chr2L:85225-85345 99 4.32e-05 TAACATCAGT TTTATAGC CCTAACTCTA chr3R:7515912-7516032 54 4.32e-05 TTGTTTATTG TTTATAGC ATGCCCCGCT chr2R:20603311-20603431 95 4.32e-05 CTTGCTTCTT TTTATAGC TGAGAGCCAT chrX:2140636-2140756 53 6.10e-05 GAAAAGGTTT TTTATGGG GTGCAAAAGA chr2L:12473861-12473981 64 6.10e-05 TGGTCTTGTT TTTATGGG TTCTGCATTT chr2R:7926439-7926559 76 6.10e-05 TTGGTGGCGG TTTATGGG TTTATGATTA chr4:558833-558953 74 8.56e-05 TTACACATAA TTTATTGC CAGATAAATA chr2L:3779495-3779615 53 8.56e-05 GAAATATCTG TTTATTGC ACTCGGTTCG chrX:11807099-11807219 41 8.56e-05 TTTCCGGCTA TTTATTGC TCTTTGCTCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:14258919-14259039 1.8e-05 58_[+1]_54 chr2R:22390355-22390475 1.8e-05 63_[+1]_49 chr2R:7049029-7049149 1.8e-05 67_[+1]_45 chr3L:18994689-18994809 1.8e-05 93_[+1]_19 chr3L:21892332-21892452 1.8e-05 41_[+1]_71 chr3L:18743797-18743917 1.8e-05 79_[+1]_33 chr3R:17065646-17065766 1.8e-05 106_[+1]_6 chr2R:15846401-15846521 1.8e-05 50_[+1]_62 chrX:17290422-17290542 1.8e-05 45_[+1]_67 chr2R:22205671-22205791 1.8e-05 85_[+1]_27 chr2R:9428778-9428898 1.8e-05 36_[+1]_76 chrX:17330755-17330875 1.8e-05 104_[+1]_8 chr2R:20252189-20252309 4.3e-05 73_[+1]_39 chr2L:85225-85345 4.3e-05 98_[+1]_14 chr3R:7515912-7516032 4.3e-05 53_[+1]_59 chr2R:20603311-20603431 4.3e-05 94_[+1]_18 chrX:2140636-2140756 6.1e-05 52_[+1]_60 chr2L:12473861-12473981 6.1e-05 63_[+1]_49 chr2R:7926439-7926559 6.1e-05 75_[+1]_37 chr4:558833-558953 8.6e-05 73_[+1]_39 chr2L:3779495-3779615 8.6e-05 52_[+1]_60 chrX:11807099-11807219 8.6e-05 40_[+1]_72 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTATGGC width=8 seqs=22 chr2R:14258919-14259039 ( 59) TTTATGGC 1 chr2R:22390355-22390475 ( 64) TTTATGGC 1 chr2R:7049029-7049149 ( 68) TTTATGGC 1 chr3L:18994689-18994809 ( 94) TTTATGGC 1 chr3L:21892332-21892452 ( 42) TTTATGGC 1 chr3L:18743797-18743917 ( 80) TTTATGGC 1 chr3R:17065646-17065766 ( 107) TTTATGGC 1 chr2R:15846401-15846521 ( 51) TTTATGGC 1 chrX:17290422-17290542 ( 46) TTTATGGC 1 chr2R:22205671-22205791 ( 86) TTTATGGC 1 chr2R:9428778-9428898 ( 37) TTTATGGC 1 chrX:17330755-17330875 ( 105) TTTATGGC 1 chr2R:20252189-20252309 ( 74) TTTATAGC 1 chr2L:85225-85345 ( 99) TTTATAGC 1 chr3R:7515912-7516032 ( 54) TTTATAGC 1 chr2R:20603311-20603431 ( 95) TTTATAGC 1 chrX:2140636-2140756 ( 53) TTTATGGG 1 chr2L:12473861-12473981 ( 64) TTTATGGG 1 chr2R:7926439-7926559 ( 76) TTTATGGG 1 chr4:558833-558953 ( 74) TTTATTGC 1 chr2L:3779495-3779615 ( 53) TTTATTGC 1 chrX:11807099-11807219 ( 41) TTTATTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.3525 E= 2.1e-001 -1110 -1110 -1110 181 -1110 -1110 -1110 181 -1110 -1110 -1110 181 178 -1110 -1110 -1110 -1110 -1110 -1110 181 -68 -1110 170 -106 -1110 -1110 225 -1110 -1110 201 -62 -1110 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 2.1e-001 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.181818 0.000000 0.681818 0.136364 0.000000 0.000000 1.000000 0.000000 0.000000 0.863636 0.136364 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTATGGC MEME-1 regular expression -------------------------------------------------------------------------------- TTTATGGC -------------------------------------------------------------------------------- Time 7.72 secs. ******************************************************************************** ******************************************************************************** MOTIF GTGGGGCW MEME-2 width = 8 sites = 7 llr = 78 E-value = 1.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GTGGGGCW MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::4 pos.-specific C ::::::a: probability G a:aaaa:: matrix T :a:::::6 bits 2.3 * ***** 2.0 * ***** 1.8 ******* 1.6 ******* Relative 1.4 ******* Entropy 1.1 ******* (16.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GTGGGGCT consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCW MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:13403750-13403870 20 7.10e-06 GTGGGGTGCT GTGGGGCT TGGGATCGCT chr3L:18895184-18895304 103 7.10e-06 CTACGATCGC GTGGGGCT CTCGCAGCTG chr3L:17001199-17001319 11 7.10e-06 GTCTCAGTGG GTGGGGCT GGTCTAAATG chr3R:17063907-17064027 23 7.10e-06 ATGTCCCCCA GTGGGGCT GCCTGATATG chr2L:12096444-12096564 74 1.43e-05 AATCTGCTGT GTGGGGCA GTGTTGGAAA chr3L:17913325-17913445 39 1.43e-05 GGTGGTGCGG GTGGGGCA TTGGCATCGA chrX:18511007-18511127 89 1.43e-05 GCGTCGTAAA GTGGGGCA ATCAAGCGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCW MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:13403750-13403870 7.1e-06 19_[+2]_93 chr3L:18895184-18895304 7.1e-06 102_[+2]_10 chr3L:17001199-17001319 7.1e-06 10_[+2]_102 chr3R:17063907-17064027 7.1e-06 22_[+2]_90 chr2L:12096444-12096564 1.4e-05 73_[+2]_39 chr3L:17913325-17913445 1.4e-05 38_[+2]_74 chrX:18511007-18511127 1.4e-05 88_[+2]_24 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCW MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GTGGGGCW width=8 seqs=7 chrX:13403750-13403870 ( 20) GTGGGGCT 1 chr3L:18895184-18895304 ( 103) GTGGGGCT 1 chr3L:17001199-17001319 ( 11) GTGGGGCT 1 chr3R:17063907-17064027 ( 23) GTGGGGCT 1 chr2L:12096444-12096564 ( 74) GTGGGGCA 1 chr3L:17913325-17913445 ( 39) GTGGGGCA 1 chrX:18511007-18511127 ( 89) GTGGGGCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCW MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.5841 E= 1.0e+004 -945 -945 225 -945 -945 -945 -945 181 -945 -945 225 -945 -945 -945 225 -945 -945 -945 225 -945 -945 -945 225 -945 -945 222 -945 -945 56 -945 -945 100 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCW MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.0e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.428571 0.000000 0.000000 0.571429 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GTGGGGCW MEME-2 regular expression -------------------------------------------------------------------------------- GTGGGGC[TA] -------------------------------------------------------------------------------- Time 14.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GGGGGTGG MEME-3 width = 8 sites = 2 llr = 24 E-value = 2.5e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :::::::: probability G aaaaa:aa matrix T :::::a:: bits 2.3 ***** ** 2.0 ***** ** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.6 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGGGGTGG consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:17913325-17913445 23 5.13e-06 GAGTTGCCGA GGGGGTGG TGGTGCGGGT chr2L:8277008-8277128 17 5.13e-06 ATTTCTGAGA GGGGGTGG CAGGTGACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:17913325-17913445 5.1e-06 22_[+3]_90 chr2L:8277008-8277128 5.1e-06 16_[+3]_96 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGGGGTGG width=8 seqs=2 chr3L:17913325-17913445 ( 23) GGGGGTGG 1 chr2L:8277008-8277128 ( 17) GGGGGTGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.5e+004 -765 -765 225 -765 -765 -765 225 -765 -765 -765 225 -765 -765 -765 225 -765 -765 -765 225 -765 -765 -765 -765 180 -765 -765 225 -765 -765 -765 225 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.5e+004 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGGGGTGG MEME-3 regular expression -------------------------------------------------------------------------------- GGGGGTGG -------------------------------------------------------------------------------- Time 20.64 secs. ******************************************************************************** ******************************************************************************** MOTIF GCSAWAAA MEME-4 width = 8 sites = 21 llr = 193 E-value = 2.8e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCSAWAAA MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::a4aaa pos.-specific C :a6:2::: probability G a:4::::: matrix T ::::4::: bits 2.3 ** 2.0 ** 1.8 ** * *** 1.6 ** * *** Relative 1.4 **** *** Entropy 1.1 **** *** (13.2 bits) 0.9 **** *** 0.7 **** *** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCCATAAA consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAWAAA MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:20252189-20252309 59 1.97e-05 ATTTATGATG GCCATAAA GAGGTGTTTT chr3L:12675398-12675518 55 1.97e-05 TTTTCAGATC GCCATAAA ATACATTAGC chr3R:26185407-26185527 24 1.97e-05 CCTAAATCAA GCCATAAA TGCCGGTCAT chr2R:18531274-18531394 94 1.97e-05 CCAGACGCTG GCCATAAA GCCGCAAAAC chr2R:13937246-13937366 66 1.97e-05 ATTCCATTTC GCCATAAA GATATGGAGA chr2R:11901802-11901922 40 1.97e-05 CTTTATGTGC GCCATAAA ACCATAAACT chr3R:21163437-21163557 4 1.97e-05 TGG GCCATAAA CTATAAACCA chr2R:14485855-14485975 64 1.97e-05 CCCAACCCTG GCCATAAA AGCTCTCCAC chr2R:15480295-15480415 101 3.97e-05 TGTTGTGCTA GCCAAAAA AAGTTCGAAT chr2R:20603311-20603431 41 3.97e-05 CCCGTTGGGC GCCAAAAA TATTAAATTT chr2L:8277008-8277128 102 3.97e-05 GCTGTGGCAC GCCAAAAA GAAACAAGTT chr2R:22247772-22247892 96 5.90e-05 GTAAGACATT GCGATAAA AGCGGTTCAG chr2R:9950236-9950356 3 7.38e-05 GG GCCACAAA TCATATAAAA chr2R:9556631-9556751 30 7.38e-05 AGAACAAAGC GCCACAAA TTGTATTGTG chr3R:18243707-18243827 72 9.35e-05 TGCCGTTGCT GCGAAAAA TCGATGAATG chr3L:19813462-19813582 42 9.35e-05 CGAAAAACGG GCGAAAAA GCCCGTCTCA chrX:17314333-17314453 91 9.35e-05 AGGTCAATGA GCGAAAAA GAGACGACGA chr2R:6518866-6518986 83 9.35e-05 CAAGCTGGGA GCGAAAAA ACTCATTTAG chr3L:5359427-5359547 4 9.35e-05 TGT GCGAAAAA CGGGCGAGAA chr3R:11760028-11760148 84 1.08e-04 TTTCGGGGGA GCGACAAA AACTGAAAAC chr2L:20831179-20831299 53 1.08e-04 TAAAAGTCCG GCGACAAA GCCAACCGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAWAAA MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:20252189-20252309 2e-05 58_[+4]_54 chr3L:12675398-12675518 2e-05 54_[+4]_58 chr3R:26185407-26185527 2e-05 23_[+4]_89 chr2R:18531274-18531394 2e-05 93_[+4]_19 chr2R:13937246-13937366 2e-05 65_[+4]_47 chr2R:11901802-11901922 2e-05 39_[+4]_73 chr3R:21163437-21163557 2e-05 3_[+4]_109 chr2R:14485855-14485975 2e-05 63_[+4]_49 chr2R:15480295-15480415 4e-05 100_[+4]_12 chr2R:20603311-20603431 4e-05 40_[+4]_72 chr2L:8277008-8277128 4e-05 101_[+4]_11 chr2R:22247772-22247892 5.9e-05 95_[+4]_17 chr2R:9950236-9950356 7.4e-05 2_[+4]_110 chr2R:9556631-9556751 7.4e-05 29_[+4]_83 chr3R:18243707-18243827 9.3e-05 71_[+4]_41 chr3L:19813462-19813582 9.3e-05 41_[+4]_71 chrX:17314333-17314453 9.3e-05 90_[+4]_22 chr2R:6518866-6518986 9.3e-05 82_[+4]_30 chr3L:5359427-5359547 9.3e-05 3_[+4]_109 chr3R:11760028-11760148 0.00011 83_[+4]_29 chr2L:20831179-20831299 0.00011 52_[+4]_60 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAWAAA MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCSAWAAA width=8 seqs=21 chr2R:20252189-20252309 ( 59) GCCATAAA 1 chr3L:12675398-12675518 ( 55) GCCATAAA 1 chr3R:26185407-26185527 ( 24) GCCATAAA 1 chr2R:18531274-18531394 ( 94) GCCATAAA 1 chr2R:13937246-13937366 ( 66) GCCATAAA 1 chr2R:11901802-11901922 ( 40) GCCATAAA 1 chr3R:21163437-21163557 ( 4) GCCATAAA 1 chr2R:14485855-14485975 ( 64) GCCATAAA 1 chr2R:15480295-15480415 ( 101) GCCAAAAA 1 chr2R:20603311-20603431 ( 41) GCCAAAAA 1 chr2L:8277008-8277128 ( 102) GCCAAAAA 1 chr2R:22247772-22247892 ( 96) GCGATAAA 1 chr2R:9950236-9950356 ( 3) GCCACAAA 1 chr2R:9556631-9556751 ( 30) GCCACAAA 1 chr3R:18243707-18243827 ( 72) GCGAAAAA 1 chr3L:19813462-19813582 ( 42) GCGAAAAA 1 chrX:17314333-17314453 ( 91) GCGAAAAA 1 chr2R:6518866-6518986 ( 83) GCGAAAAA 1 chr3L:5359427-5359547 ( 4) GCGAAAAA 1 chr3R:11760028-11760148 ( 84) GCGACAAA 1 chr2L:20831179-20831299 ( 53) GCGACAAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAWAAA MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.8872 E= 2.8e+004 -1104 -1104 225 -1104 -1104 222 -1104 -1104 -1104 153 86 -1104 178 -1104 -1104 -1104 39 -17 -1104 59 178 -1104 -1104 -1104 178 -1104 -1104 -1104 178 -1104 -1104 -1104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAWAAA MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 2.8e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.619048 0.380952 0.000000 1.000000 0.000000 0.000000 0.000000 0.380952 0.190476 0.000000 0.428571 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCSAWAAA MEME-4 regular expression -------------------------------------------------------------------------------- GC[CG]A[TA]AAA -------------------------------------------------------------------------------- Time 27.08 secs. ******************************************************************************** ******************************************************************************** MOTIF TTTTRTTT MEME-5 width = 8 sites = 46 llr = 372 E-value = 2.8e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTTTRTTT MEME-5 Description -------------------------------------------------------------------------------- Simplified A 2::15::: pos.-specific C :::2:::: probability G ::::4::: matrix T 8aa7:aaa bits 2.3 2.0 1.8 ** *** 1.6 ** *** Relative 1.4 ** *** Entropy 1.1 ** *** (11.7 bits) 0.9 *** **** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTTTATTT consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTRTTT MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:16772631-16772751 4 3.21e-05 TTG TTTTGTTT TTGTTTGGCT chr3L:17008967-17009087 35 3.21e-05 TTTCACTTTT TTTTGTTT TTATTATTAT chr3L:18833369-18833489 89 3.21e-05 ACTGTTGTTA TTTTGTTT ATACACATAT chr3R:7515912-7516032 8 3.21e-05 GCCGTTG TTTTGTTT AGGCGTTATC chr2R:9814207-9814327 25 3.21e-05 tgctctctga ttttgttt tcgtCGATGT chr3L:17006412-17006532 36 3.21e-05 CGGGCACTTA TTTTGTTT GCCCAGCTCA chr2L:9176928-9177048 41 3.21e-05 TTTATTTATA TTTTGTTT CGTTTCCACT chr4:70321-70441 11 3.21e-05 ACGCATATAT TTTTGTTT AGACTCTGTC chr2L:12473861-12473981 79 3.21e-05 GGGTTCTGCA TTTTGTTT TTCACTAAAG chr2L:19389971-19390091 4 3.21e-05 AGT TTTTGTTT ttcgatttcg chr2R:14573139-14573259 64 3.21e-05 ATTTCGAGGT TTTTGTTT GCCTTGGGAG chrX:17293565-17293685 74 7.65e-05 TAATAGCTAG TTTTATTT GTCCAAGTGT chr3R:27274646-27274766 105 7.65e-05 CCTGCTCACA TTTTATTT GAAAATTT chrX:11349891-11350011 23 7.65e-05 ATATGACCAC TTTTATTT TATGCATATT chr2R:23611942-23612062 27 7.65e-05 TGCTGCCCCC TTTTATTT ACGGCTGTAA chr2L:21219760-21219880 21 7.65e-05 TTTCTTGTCA TTTTATTT CATCCTTATC chr2L:5151608-5151728 16 7.65e-05 GTTTTCGTTC TTTTATTT CCGCAGCGCC chr3L:1819099-1819219 67 7.65e-05 TCGCGCCGCT TTTTATTT TCTGTCTCGG chr2R:8749283-8749403 42 7.65e-05 TTTTTCTTTA TTTTATTT TTTAGGTGAT chr2R:10437368-10437488 110 7.65e-05 TAATCATTTA TTTTATTT AAC chr3L:12803460-12803580 26 7.65e-05 TGTTTACGTA TTTTATTT GTATCGCCAA chr3L:7860690-7860810 84 1.33e-04 GGCAATCGTT TTTCGTTT TTATTGGCCA chr3R:25249215-25249335 22 1.33e-04 CCTTATACTT ATTTGTTT GTTCGAAAAA chr2R:20654960-20655080 14 1.33e-04 TCTTACCGCG TTTCGTTT TGGGATGGCG chr3R:24102532-24102652 56 1.33e-04 CTTCTCATGT TTTCGTTT CGCATTATCA chrX:20661789-20661909 22 1.33e-04 ttccgtttcg tttcgttt cgtATTGCTG chr3R:21582865-21582985 74 1.33e-04 TATTGTTTAA TTTCGTTT AACGCGCCTC chr2R:22789426-22789546 5 2.12e-04 TAGA ATTTATTT AAAGTTTTCT chr4:558833-558953 110 2.12e-04 TGGAAAAATT ATTTATTT ATG chr3R:25245595-25245715 99 2.12e-04 ACGTGACTAT TTTCATTT TTTTAATTat chr3L:10893264-10893384 91 2.12e-04 CGCATTCATA TTTCATTT GCATATCATT chr3L:548989-549109 49 2.12e-04 CCTTCGCTTT ATTTATTT TTCGCTTATT chr3L:12675398-12675518 30 2.12e-04 ATTTACGCCT ATTTATTT TGTCCCCTTT chr2L:14410400-14410520 34 2.12e-04 TTTGTGGGGA ATTTATTT CCACACATGT chr3R:13802313-13802433 26 2.12e-04 ACTGATGCAT TTTCATTT ACCAGGCGAT chr3R:17063907-17064027 49 2.12e-04 TGCAAAGATT ATTTATTT TTATATCGCC chr2L:4456845-4456965 75 2.12e-04 TTAAATTACT ATTTATTT TCTTTATATT chr2R:9950236-9950356 60 2.12e-04 TTCATTATTG ATTTATTT GCTTAGCTGC chr3L:19961922-19962042 33 2.12e-04 TGAAAATAGA ATTTATTT AAATGCCTGT chr3L:7116100-7116220 55 2.12e-04 GCGCTATTTA ATTTATTT GGAATTTCGA chr2R:8150794-8150914 76 2.45e-04 GTAAAGGAGC TTTAGTTT GCTGTAAACA chrX:11807099-11807219 84 2.45e-04 TGTCGATGAG TTTAGTTT TCTAGAAACA chr2L:17368649-17368769 83 2.45e-04 ACTGTAAACG TTTAGTTT TTGGTATATT chr2L:8198874-8198994 42 2.90e-04 GACAGCACTG TTTAATTT ATCGAATATT chr3L:17049972-17050092 49 2.90e-04 CCCTTGGCCT TTTAATTT CACTTGACAT chr2R:23057682-23057802 9 4.72e-04 TATGTACA TTTTTTTT GGGGTTTCGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTRTTT MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:16772631-16772751 3.2e-05 3_[+5]_109 chr3L:17008967-17009087 3.2e-05 34_[+5]_78 chr3L:18833369-18833489 3.2e-05 88_[+5]_24 chr3R:7515912-7516032 3.2e-05 7_[+5]_105 chr2R:9814207-9814327 3.2e-05 24_[+5]_88 chr3L:17006412-17006532 3.2e-05 35_[+5]_77 chr2L:9176928-9177048 3.2e-05 40_[+5]_72 chr4:70321-70441 3.2e-05 10_[+5]_102 chr2L:12473861-12473981 3.2e-05 78_[+5]_34 chr2L:19389971-19390091 3.2e-05 3_[+5]_109 chr2R:14573139-14573259 3.2e-05 63_[+5]_49 chrX:17293565-17293685 7.7e-05 73_[+5]_39 chr3R:27274646-27274766 7.7e-05 104_[+5]_8 chrX:11349891-11350011 7.7e-05 22_[+5]_90 chr2R:23611942-23612062 7.7e-05 26_[+5]_86 chr2L:21219760-21219880 7.7e-05 20_[+5]_92 chr2L:5151608-5151728 7.7e-05 15_[+5]_97 chr3L:1819099-1819219 7.7e-05 66_[+5]_46 chr2R:8749283-8749403 7.7e-05 41_[+5]_71 chr2R:10437368-10437488 7.7e-05 109_[+5]_3 chr3L:12803460-12803580 7.7e-05 25_[+5]_87 chr3L:7860690-7860810 0.00013 83_[+5]_29 chr3R:25249215-25249335 0.00013 21_[+5]_91 chr2R:20654960-20655080 0.00013 13_[+5]_99 chr3R:24102532-24102652 0.00013 55_[+5]_57 chrX:20661789-20661909 0.00013 21_[+5]_91 chr3R:21582865-21582985 0.00013 73_[+5]_39 chr2R:22789426-22789546 0.00021 4_[+5]_108 chr4:558833-558953 0.00021 109_[+5]_3 chr3R:25245595-25245715 0.00021 98_[+5]_14 chr3L:10893264-10893384 0.00021 90_[+5]_22 chr3L:548989-549109 0.00021 48_[+5]_64 chr3L:12675398-12675518 0.00021 29_[+5]_83 chr2L:14410400-14410520 0.00021 33_[+5]_79 chr3R:13802313-13802433 0.00021 25_[+5]_87 chr3R:17063907-17064027 0.00021 48_[+5]_64 chr2L:4456845-4456965 0.00021 74_[+5]_38 chr2R:9950236-9950356 0.00021 59_[+5]_53 chr3L:19961922-19962042 0.00021 32_[+5]_80 chr3L:7116100-7116220 0.00021 54_[+5]_58 chr2R:8150794-8150914 0.00024 75_[+5]_37 chrX:11807099-11807219 0.00024 83_[+5]_29 chr2L:17368649-17368769 0.00024 82_[+5]_30 chr2L:8198874-8198994 0.00029 41_[+5]_71 chr3L:17049972-17050092 0.00029 48_[+5]_64 chr2R:23057682-23057802 0.00047 8_[+5]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTRTTT MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTTTRTTT width=8 seqs=46 chr2R:16772631-16772751 ( 4) TTTTGTTT 1 chr3L:17008967-17009087 ( 35) TTTTGTTT 1 chr3L:18833369-18833489 ( 89) TTTTGTTT 1 chr3R:7515912-7516032 ( 8) TTTTGTTT 1 chr2R:9814207-9814327 ( 25) TTTTGTTT 1 chr3L:17006412-17006532 ( 36) TTTTGTTT 1 chr2L:9176928-9177048 ( 41) TTTTGTTT 1 chr4:70321-70441 ( 11) TTTTGTTT 1 chr2L:12473861-12473981 ( 79) TTTTGTTT 1 chr2L:19389971-19390091 ( 4) TTTTGTTT 1 chr2R:14573139-14573259 ( 64) TTTTGTTT 1 chrX:17293565-17293685 ( 74) TTTTATTT 1 chr3R:27274646-27274766 ( 105) TTTTATTT 1 chrX:11349891-11350011 ( 23) TTTTATTT 1 chr2R:23611942-23612062 ( 27) TTTTATTT 1 chr2L:21219760-21219880 ( 21) TTTTATTT 1 chr2L:5151608-5151728 ( 16) TTTTATTT 1 chr3L:1819099-1819219 ( 67) TTTTATTT 1 chr2R:8749283-8749403 ( 42) TTTTATTT 1 chr2R:10437368-10437488 ( 110) TTTTATTT 1 chr3L:12803460-12803580 ( 26) TTTTATTT 1 chr3L:7860690-7860810 ( 84) TTTCGTTT 1 chr3R:25249215-25249335 ( 22) ATTTGTTT 1 chr2R:20654960-20655080 ( 14) TTTCGTTT 1 chr3R:24102532-24102652 ( 56) TTTCGTTT 1 chrX:20661789-20661909 ( 22) TTTCGTTT 1 chr3R:21582865-21582985 ( 74) TTTCGTTT 1 chr2R:22789426-22789546 ( 5) ATTTATTT 1 chr4:558833-558953 ( 110) ATTTATTT 1 chr3R:25245595-25245715 ( 99) TTTCATTT 1 chr3L:10893264-10893384 ( 91) TTTCATTT 1 chr3L:548989-549109 ( 49) ATTTATTT 1 chr3L:12675398-12675518 ( 30) ATTTATTT 1 chr2L:14410400-14410520 ( 34) ATTTATTT 1 chr3R:13802313-13802433 ( 26) TTTCATTT 1 chr3R:17063907-17064027 ( 49) ATTTATTT 1 chr2L:4456845-4456965 ( 75) ATTTATTT 1 chr2R:9950236-9950356 ( 60) ATTTATTT 1 chr3L:19961922-19962042 ( 33) ATTTATTT 1 chr3L:7116100-7116220 ( 55) ATTTATTT 1 chr2R:8150794-8150914 ( 76) TTTAGTTT 1 chrX:11807099-11807219 ( 84) TTTAGTTT 1 chr2L:17368649-17368769 ( 83) TTTAGTTT 1 chr2L:8198874-8198994 ( 42) TTTAATTT 1 chr3L:17049972-17050092 ( 49) TTTAATTT 1 chr2R:23057682-23057802 ( 9) TTTTTTTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTRTTT MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.3254 E= 2.8e+001 -28 -1217 -1217 142 -1217 -1217 -1217 181 -1217 -1217 -1217 181 -142 -30 -1217 133 90 -1217 105 -371 -1217 -1217 -1217 181 -1217 -1217 -1217 181 -1217 -1217 -1217 181 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTRTTT MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 46 E= 2.8e+001 0.239130 0.000000 0.000000 0.760870 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.108696 0.173913 0.000000 0.717391 0.543478 0.000000 0.434783 0.021739 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTTTRTTT MEME-5 regular expression -------------------------------------------------------------------------------- [TA]TTT[AG]TTT -------------------------------------------------------------------------------- Time 33.48 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17330755-17330875 2.71e-03 104_[+1(1.81e-05)]_8 chr3R:8815416-8815536 3.78e-01 120 chr2R:14485855-14485975 1.04e-01 63_[+4(1.97e-05)]_49 chr3L:1964868-1964988 9.48e-01 120 chrX:17330068-17330188 7.59e-01 120 chr3L:7116100-7116220 7.92e-02 120 chr2R:7729962-7730082 9.83e-01 120 chr3L:14789839-14789959 8.23e-01 120 chr2L:4928530-4928650 3.87e-01 120 chr3L:19961922-19962042 4.31e-01 120 chr2R:9556631-9556751 1.75e-01 29_[+4(7.38e-05)]_83 chr3L:5359427-5359547 4.33e-02 3_[+4(9.35e-05)]_109 chr3L:16877136-16877256 9.99e-01 120 chr2R:9950236-9950356 2.92e-02 2_[+4(7.38e-05)]_110 chr2R:9428778-9428898 4.81e-03 36_[+1(1.81e-05)]_76 chr2R:7926439-7926559 1.53e-03 44_[+2(6.09e-05)]_23_[+1(6.10e-05)]_\ 37 chr2L:4456845-4456965 1.43e-01 120 chr3L:12803460-12803580 1.66e-03 25_[+5(7.65e-05)]_87 chr3R:17063907-17064027 1.32e-03 22_[+2(7.10e-06)]_90 chr3R:9334657-9334777 8.43e-01 120 chr2R:16225561-16225681 2.31e-02 1_[+4(5.90e-05)]_111 chr3L:630807-630927 1.83e-01 120 chr3R:11968345-11968465 2.10e-01 120 chr3R:29116292-29116412 6.10e-01 120 chr3L:17001199-17001319 2.77e-04 10_[+2(7.10e-06)]_102 chr2R:9429549-9429669 9.08e-01 120 chr2R:10079898-10080018 3.27e-01 120 chr3R:31420736-31420856 5.35e-01 120 chr2R:14573139-14573259 9.33e-02 63_[+5(3.21e-05)]_49 chr3R:13802313-13802433 2.43e-01 120 chr2L:6085823-6085943 2.12e-01 21_[+4(9.35e-05)]_65_[+4(3.97e-05)]_\ 18 chr4:156065-156185 4.61e-01 120 chr2R:10437368-10437488 4.99e-02 109_[+5(7.65e-05)]_3 chr2L:5945684-5945804 6.68e-01 120 chr2L:19389971-19390091 6.50e-02 3_[+5(3.21e-05)]_109 chr2R:19125606-19125726 2.79e-01 120 chr2R:10151172-10151292 4.85e-01 120 chr3L:11532094-11532214 8.45e-01 120 chr2R:16869371-16869491 5.98e-01 120 chrX:17345942-17346062 7.41e-03 44_[+2(6.09e-05)]_68 chr3L:18998107-18998227 4.13e-01 120 chr3R:31608144-31608264 6.35e-01 120 chr2R:22205671-22205791 2.90e-02 85_[+1(1.81e-05)]_27 chr2R:14873701-14873821 5.00e-01 120 chr3L:15959022-15959142 1.74e-01 120 chr2L:16530207-16530327 5.45e-01 120 chr2R:6518866-6518986 7.23e-02 82_[+4(9.35e-05)]_30 chr2L:12473861-12473981 6.79e-03 21_[+5(7.65e-05)]_34_[+1(6.10e-05)]_\ 7_[+5(3.21e-05)]_34 chr2L:20773854-20773974 6.21e-01 120 chr2L:20830133-20830253 4.78e-01 120 chrX:13749957-13750077 5.14e-02 120 chr2L:20831179-20831299 1.33e-01 120 chr3R:21582865-21582985 1.82e-01 120 chr2R:22247772-22247892 3.78e-02 95_[+4(5.90e-05)]_17 chr2R:14219225-14219345 9.96e-01 120 chr3L:9304581-9304701 1.21e-01 120 chrX:17313483-17313603 7.41e-02 120 chr3R:21163437-21163557 6.69e-02 3_[+4(1.97e-05)]_109 chr2R:10045471-10045591 1.91e-02 [+2(6.09e-05)]_112 chrX:20661789-20661909 4.32e-01 120 chr3R:12443877-12443997 8.92e-01 120 chr3R:12716393-12716513 3.93e-02 120 chrX:9600920-9601040 5.98e-01 120 chr3R:11689957-11690077 1.09e-02 120 chr3R:24102532-24102652 5.25e-01 120 chrX:18511007-18511127 4.92e-03 88_[+2(1.43e-05)]_24 chr3R:14568921-14569041 7.30e-01 120 chr3R:31722082-31722202 2.72e-02 120 chr3L:11291302-11291422 1.09e-01 120 chr2L:20796933-20797053 3.33e-01 120 chr2R:21214869-21214989 8.21e-01 120 chr3L:19902728-19902848 9.92e-01 120 chr3L:20000335-20000455 9.64e-01 120 chrX:17290422-17290542 2.86e-02 45_[+1(1.81e-05)]_67 chr3R:19621067-19621187 8.74e-01 120 chr2L:5117245-5117365 8.05e-01 120 chr3R:32022193-32022313 5.64e-01 120 chr2L:20840576-20840696 8.82e-02 120 chr2R:11901802-11901922 1.34e-02 39_[+4(1.97e-05)]_73 chr2L:8277008-8277128 4.31e-04 16_[+3(5.13e-06)]_77_[+4(3.97e-05)]_\ 11 chr2R:13937246-13937366 3.73e-02 65_[+4(1.97e-05)]_47 chr3L:8121728-8121848 9.79e-01 120 chr3L:20386158-20386278 7.65e-01 120 chr2R:23057682-23057802 3.52e-02 120 chrX:13396097-13396217 4.92e-01 120 chr3R:30056118-30056238 9.84e-01 120 chr3L:10370482-10370602 1.61e-01 120 chr3L:17049972-17050092 6.54e-01 120 chr3L:4283753-4283873 6.35e-01 120 chr2R:8749283-8749403 1.03e-01 41_[+5(7.65e-05)]_71 chr2R:18531274-18531394 2.88e-02 93_[+4(1.97e-05)]_19 chrX:12469314-12469434 1.05e-01 120 chr2R:7749775-7749895 6.76e-01 120 chr2L:8203088-8203208 1.44e-01 120 chr2R:24779812-24779932 5.22e-01 120 chr3L:18895184-18895304 1.70e-02 102_[+2(7.10e-06)]_10 chr2R:16017702-16017822 2.01e-01 120 chr3R:21276273-21276393 4.60e-01 120 chr3L:5569889-5570009 5.36e-01 120 chr3L:1819099-1819219 1.99e-01 66_[+5(7.65e-05)]_46 chr3R:8807900-8808020 8.78e-01 120 chr4:60088-60208 6.35e-01 120 chr3L:3236412-3236532 8.40e-01 120 chr3R:8814407-8814527 1.46e-01 120 chr2L:12464250-12464370 1.34e-01 120 chr3L:15689703-15689823 3.53e-01 120 chr2L:1125519-1125639 4.76e-01 120 chr3R:26185407-26185527 1.29e-01 23_[+4(1.97e-05)]_89 chr2L:5151608-5151728 4.77e-03 15_[+5(7.65e-05)]_97 chr3R:9001903-9002023 8.18e-01 120 chrX:13333305-13333425 7.91e-01 120 chr3L:17804675-17804795 8.71e-02 120 chr2R:20654960-20655080 1.08e-01 120 chr2R:22644733-22644853 9.26e-01 120 chr3R:9008372-9008492 2.37e-01 120 chr2R:11295262-11295382 6.80e-01 120 chr3R:30423860-30423980 9.36e-01 120 chr3L:16356432-16356552 9.92e-01 120 chr3R:11760028-11760148 6.71e-02 120 chr2L:14410400-14410520 1.77e-03 120 chr4:70321-70441 2.99e-01 10_[+5(3.21e-05)]_102 chr2L:8198874-8198994 2.71e-01 120 chr2R:9544179-9544299 1.41e-01 120 chrX:17314333-17314453 4.72e-02 90_[+4(9.35e-05)]_22 chr2L:21219760-21219880 1.04e-01 20_[+5(7.65e-05)]_92 chr2R:24399447-24399567 4.31e-01 120 chr2R:24963286-24963406 5.77e-02 120 chr3L:7423532-7423652 8.17e-02 120 chr2L:2348640-2348760 5.49e-01 120 chr3L:2457907-2458027 6.78e-01 120 chr2L:17368649-17368769 3.66e-01 120 chr2R:23611942-23612062 9.54e-04 26_[+5(7.65e-05)]_14_[+2(6.09e-05)]_\ 64 chr3R:18296264-18296384 7.04e-01 120 chr2L:6868406-6868526 6.75e-02 14_[+4(9.35e-05)]_6_[+4(1.97e-05)]_\ 84 chrX:10621796-10621916 6.33e-01 120 chr3R:5503927-5504047 6.51e-01 120 chr3L:12203831-12203951 9.26e-01 120 chr3R:17687083-17687203 5.59e-01 120 chr3L:17913325-17913445 1.75e-04 22_[+3(5.13e-06)]_8_[+2(1.43e-05)]_\ 74 chr3R:27905890-27906010 4.15e-01 120 chr3R:31220535-31220655 4.71e-01 120 chr3L:11285762-11285882 8.01e-01 120 chr3L:12675398-12675518 3.04e-03 54_[+4(1.97e-05)]_58 chr3L:19813462-19813582 4.30e-01 41_[+4(9.35e-05)]_71 chr3L:548989-549109 3.07e-01 120 chr3R:14051638-14051758 1.93e-01 120 chr2L:155238-155358 4.83e-01 120 chr3L:17539065-17539185 5.26e-01 120 chr2R:20603311-20603431 2.27e-04 40_[+4(3.97e-05)]_46_[+1(4.32e-05)]_\ 18 chr3R:21584654-21584774 2.86e-01 120 chr2R:16289299-16289419 5.13e-01 120 chr3L:10893264-10893384 5.71e-01 120 chrX:12756496-12756616 9.80e-01 120 chr2L:9176928-9177048 1.28e-01 40_[+5(3.21e-05)]_72 chr3L:17006412-17006532 2.27e-02 35_[+5(3.21e-05)]_77 chr2R:15846401-15846521 1.07e-01 50_[+1(1.81e-05)]_62 chr2R:10617666-10617786 8.12e-01 120 chrX:6439641-6439761 4.00e-01 120 chr2L:8570585-8570705 9.97e-01 120 chr2L:295028-295148 8.98e-01 120 chr3R:17065646-17065766 5.92e-02 106_[+1(1.81e-05)]_6 chr2R:15480295-15480415 3.38e-02 100_[+4(3.97e-05)]_12 chr2R:9814207-9814327 1.51e-01 24_[+5(3.21e-05)]_88 chr3R:30198966-30199086 7.07e-01 120 chr2L:12096444-12096564 5.57e-02 73_[+2(1.43e-05)]_39 chr3L:18743797-18743917 5.93e-02 79_[+1(1.81e-05)]_33 chr3R:7515912-7516032 1.41e-02 7_[+5(3.21e-05)]_38_[+1(4.32e-05)]_\ 59 chr3L:21892332-21892452 8.57e-02 41_[+1(1.81e-05)]_71 chr3R:25245595-25245715 1.71e-01 120 chr2R:16849565-16849685 7.92e-01 120 chr3R:21206848-21206968 1.00e-01 120 chr3R:19223546-19223666 2.60e-01 120 chr2L:85225-85345 6.42e-02 98_[+1(4.32e-05)]_14 chr3R:18243707-18243827 2.31e-01 71_[+4(9.35e-05)]_41 chrX:11807099-11807219 7.08e-02 40_[+1(8.56e-05)]_72 chr3R:29723254-29723374 1.92e-01 120 chr2L:7218116-7218236 9.02e-01 120 chr3L:1318346-1318466 5.24e-01 120 chr3R:16256261-16256381 1.40e-01 120 chr2L:3779495-3779615 2.89e-02 52_[+1(8.56e-05)]_60 chrX:11349891-11350011 3.08e-02 22_[+5(7.65e-05)]_90 chr3L:18994689-18994809 1.03e-02 93_[+1(1.81e-05)]_19 chr3R:14513622-14513742 5.14e-02 120 chr2L:273737-273857 5.65e-01 120 chrX:2140636-2140756 1.62e-02 52_[+1(6.10e-05)]_60 chr2R:13168016-13168136 8.93e-01 120 chr3L:9333881-9334001 6.24e-01 120 chr3R:27274646-27274766 2.26e-01 104_[+5(7.65e-05)]_8 chr4:558833-558953 2.79e-02 73_[+1(8.56e-05)]_39 chr3L:17644304-17644424 8.60e-01 120 chrX:15802994-15803114 4.40e-01 120 chrX:17293565-17293685 6.92e-02 73_[+5(7.65e-05)]_39 chr3R:22794107-22794227 4.15e-01 120 chr2L:4973879-4973999 6.62e-01 120 chr3L:5749779-5749899 6.43e-01 120 chr3R:5746794-5746914 7.67e-01 120 chrX:13310875-13310995 1.96e-02 101_[+3(1.80e-05)]_11 chr2R:20252189-20252309 7.05e-03 58_[+4(1.97e-05)]_7_[+1(4.32e-05)]_\ 39 chr3L:3903350-3903470 1.21e-02 120 chr2R:16850262-16850382 5.17e-01 120 chr3R:16211357-16211477 6.97e-01 120 chr3R:6382818-6382938 8.03e-01 120 chr2L:9522829-9522949 5.41e-01 120 chr2L:9498733-9498853 8.21e-01 120 chr3R:25249215-25249335 1.55e-01 120 chr2R:14265619-14265739 9.74e-01 120 chr2R:19462475-19462595 7.98e-01 120 chr3L:7865961-7866081 5.35e-01 120 chr3L:9729928-9730048 8.42e-01 120 chr3L:18833369-18833489 8.44e-02 88_[+5(3.21e-05)]_24 chr2R:9098463-9098583 7.15e-01 120 chr2L:16790880-16791000 3.74e-02 120 chrX:17305677-17305797 6.54e-01 120 chr3L:17008967-17009087 1.53e-01 34_[+5(3.21e-05)]_78 chr2R:7049029-7049149 7.74e-03 67_[+1(1.81e-05)]_45 chr2R:23043072-23043192 2.70e-02 120 chr3R:5063282-5063402 9.97e-01 120 chr3L:5608297-5608417 2.02e-01 120 chr3L:10698219-10698339 1.23e-01 120 chr2R:22390355-22390475 1.05e-01 63_[+1(1.81e-05)]_49 chr3R:23161483-23161603 1.22e-01 120 chr3R:25652231-25652351 5.99e-01 120 chr2R:16772631-16772751 3.11e-02 3_[+5(3.21e-05)]_109 chr3L:7862475-7862595 1.82e-01 120 chr3L:8338983-8339103 4.23e-01 120 chr2L:12004693-12004813 3.48e-01 120 chr3L:16002648-16002768 6.80e-01 120 chr4:1218913-1219033 8.41e-01 120 chr3R:20549109-20549229 3.97e-01 120 chr2R:14258919-14259039 7.23e-03 58_[+1(1.81e-05)]_54 chr2R:17098531-17098651 8.23e-01 120 chr4:416506-416626 9.60e-01 120 chr3R:21198179-21198299 2.90e-02 120 chr2L:9182731-9182851 4.87e-01 120 chrX:11379273-11379393 4.01e-01 120 chr3L:7860690-7860810 6.84e-02 120 chr3R:11822445-11822565 9.36e-01 120 chrX:22449331-22449451 5.12e-01 120 chr3L:8449316-8449436 1.05e-01 120 chr3L:18901498-18901618 9.47e-01 120 chr2R:22789426-22789546 4.89e-01 120 chrX:13403750-13403870 8.84e-04 19_[+2(7.10e-06)]_93 chr2L:143232-143352 9.70e-01 120 chr3L:14055857-14055977 8.18e-01 120 chr3L:203714-203834 4.67e-01 120 chr3R:26945408-26945528 3.61e-01 120 chr2R:8150794-8150914 6.36e-02 120 chr2L:18119839-18119959 4.55e-01 120 chr3R:22527252-22527372 1.66e-01 120 chr3R:24938239-24938359 5.05e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c22n12.farnam.hpc.yale.internal ********************************************************************************