******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Atf3.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2R:6812371-6812491 1.0000 120 chr2R:23062524-23062644 1.0000 120 chr2R:19450731-19450851 1.0000 120 chr2L:14341094-14341214 1.0000 120 chr2R:7046142-7046262 1.0000 120 chr2R:23046151-23046271 1.0000 120 chr4:416495-416615 1.0000 120 chrX:1242160-1242280 1.0000 120 chr3R:19632732-19632852 1.0000 120 chr3L:441800-441920 1.0000 120 chrX:16766998-16767118 1.0000 120 chr2R:16270696-16270816 1.0000 120 chr2R:8725513-8725633 1.0000 120 chr2L:8740190-8740310 1.0000 120 chr3R:12691792-12691912 1.0000 120 chr3L:3149130-3149250 1.0000 120 chr2L:13290925-13291045 1.0000 120 chr2L:9134461-9134581 1.0000 120 chr3R:11648975-11649095 1.0000 120 chr2L:6644394-6644514 1.0000 120 chr2L:5001466-5001586 1.0000 120 chr3R:15292855-15292975 1.0000 120 chr3R:26540630-26540750 1.0000 120 chr3R:4453805-4453925 1.0000 120 chr3L:18771232-18771352 1.0000 120 chr2R:24763054-24763174 1.0000 120 chr3R:24918517-24918637 1.0000 120 chr2R:17111184-17111304 1.0000 120 chr2R:24515142-24515262 1.0000 120 chr3R:24026227-24026347 1.0000 120 chrX:11557696-11557816 1.0000 120 chr3R:18628626-18628746 1.0000 120 chr2R:17027544-17027664 1.0000 120 chr2R:6991812-6991932 1.0000 120 chr2L:8084766-8084886 1.0000 120 chr3R:21187400-21187520 1.0000 120 chr2R:18835550-18835670 1.0000 120 chr3R:8357640-8357760 1.0000 120 chrX:1279183-1279303 1.0000 120 chr2R:14766959-14767079 1.0000 120 chr3R:8801431-8801551 1.0000 120 chr2R:23072406-23072526 1.0000 120 chrX:17657853-17657973 1.0000 120 chr2R:7566824-7566944 1.0000 120 chrX:10814774-10814894 1.0000 120 chrX:6796263-6796383 1.0000 120 chr2R:6758951-6759071 1.0000 120 chr2L:4576637-4576757 1.0000 120 chrX:8881830-8881950 1.0000 120 chrX:11558536-11558656 1.0000 120 chr2L:20758447-20758567 1.0000 120 chrX:12075677-12075797 1.0000 120 chrX:18371624-18371744 1.0000 120 chrX:2652581-2652701 1.0000 120 chr2R:12034030-12034150 1.0000 120 chrX:9075869-9075989 1.0000 120 chrX:6310542-6310662 1.0000 120 chr2L:4336252-4336372 1.0000 120 chr3R:18738219-18738339 1.0000 120 chr3L:1794249-1794369 1.0000 120 chr2R:14576990-14577110 1.0000 120 chr2R:12438843-12438963 1.0000 120 chr2L:1974191-1974311 1.0000 120 chr3L:11918374-11918494 1.0000 120 chrX:3538919-3539039 1.0000 120 chrX:19884402-19884522 1.0000 120 chr3L:779194-779314 1.0000 120 chr3R:8108269-8108389 1.0000 120 chr2R:19449679-19449799 1.0000 120 chrX:19608209-19608329 1.0000 120 chr3R:17682591-17682711 1.0000 120 chr3R:7188127-7188247 1.0000 120 chr2R:7669020-7669140 1.0000 120 chr2L:19629441-19629561 1.0000 120 chr2R:22379284-22379404 1.0000 120 chr3R:31696775-31696895 1.0000 120 chr3R:31709862-31709982 1.0000 120 chr3L:4104063-4104183 1.0000 120 chr3R:14019643-14019763 1.0000 120 chr2L:22024531-22024651 1.0000 120 chr2L:20714685-20714805 1.0000 120 chr3R:15425741-15425861 1.0000 120 chr2R:11047238-11047358 1.0000 120 chr3R:10884830-10884950 1.0000 120 chr2R:16103059-16103179 1.0000 120 chrX:8671472-8671592 1.0000 120 chr2R:7567023-7567143 1.0000 120 chrX:3714125-3714245 1.0000 120 chr3R:11157035-11157155 1.0000 120 chr3R:13802407-13802527 1.0000 120 chr3R:9883807-9883927 1.0000 120 chr3L:9028200-9028320 1.0000 120 chr3R:4805007-4805127 1.0000 120 chr2L:19200338-19200458 1.0000 120 chr3R:31712692-31712812 1.0000 120 chr2L:7339746-7339866 1.0000 120 chr3R:29696451-29696571 1.0000 120 chr3R:10605223-10605343 1.0000 120 chrX:19839283-19839403 1.0000 120 chr3R:7793998-7794118 1.0000 120 chr3R:27150129-27150249 1.0000 120 chr3L:3080689-3080809 1.0000 120 chr2R:14186479-14186599 1.0000 120 chrX:8574923-8575043 1.0000 120 chr3R:21856736-21856856 1.0000 120 chr3R:30815076-30815196 1.0000 120 chr3R:21993034-21993154 1.0000 120 chr3R:16907905-16908025 1.0000 120 chrX:19898012-19898132 1.0000 120 chr3R:30563174-30563294 1.0000 120 chr2L:11272018-11272138 1.0000 120 chrX:16683896-16684016 1.0000 120 chr2L:889955-890075 1.0000 120 chrX:7110228-7110348 1.0000 120 chrX:11137699-11137819 1.0000 120 chr3R:9793236-9793356 1.0000 120 chr3L:6140329-6140449 1.0000 120 chr3L:15794392-15794512 1.0000 120 chr3R:8349452-8349572 1.0000 120 chr2R:21527354-21527474 1.0000 120 chr2R:9143851-9143971 1.0000 120 chr3R:8105894-8106014 1.0000 120 chrX:11154006-11154126 1.0000 120 chr3L:8675215-8675335 1.0000 120 chr3R:8119916-8120036 1.0000 120 chr3L:5182448-5182568 1.0000 120 chr2L:1643686-1643806 1.0000 120 chr3L:1578776-1578896 1.0000 120 chr3R:9704567-9704687 1.0000 120 chr3R:6664480-6664600 1.0000 120 chrX:14839897-14840017 1.0000 120 chr3L:8628199-8628319 1.0000 120 chr2L:901487-901607 1.0000 120 chr3R:28327320-28327440 1.0000 120 chr3L:698961-699081 1.0000 120 chr2L:6075330-6075450 1.0000 120 chr2R:21073640-21073760 1.0000 120 chr2L:937109-937229 1.0000 120 chr3R:4403691-4403811 1.0000 120 chr2L:19233434-19233554 1.0000 120 chr3L:13068497-13068617 1.0000 120 chr2L:19285698-19285818 1.0000 120 chr3L:13015327-13015447 1.0000 120 chr3R:10203714-10203834 1.0000 120 chr3R:29782606-29782726 1.0000 120 chr3R:10628493-10628613 1.0000 120 chrX:14583365-14583485 1.0000 120 chr3L:4353982-4354102 1.0000 120 chr3L:11358859-11358979 1.0000 120 chr2R:13214615-13214735 1.0000 120 chr3L:16768415-16768535 1.0000 120 chr3R:11244149-11244269 1.0000 120 chr3R:28861642-28861762 1.0000 120 chr3R:4732278-4732398 1.0000 120 chr3R:16704382-16704502 1.0000 120 chr3R:11220009-11220129 1.0000 120 chrX:1236648-1236768 1.0000 120 chr3R:22447383-22447503 1.0000 120 chr3R:20309396-20309516 1.0000 120 chr3L:16147908-16148028 1.0000 120 chrX:12470503-12470623 1.0000 120 chr2L:6339624-6339744 1.0000 120 chr3R:16847419-16847539 1.0000 120 chr3R:30812639-30812759 1.0000 120 chr3L:5857086-5857206 1.0000 120 chr3R:10024155-10024275 1.0000 120 chr3L:11334185-11334305 1.0000 120 chr2R:12729306-12729426 1.0000 120 chrX:18774907-18775027 1.0000 120 chrX:6663329-6663449 1.0000 120 chr2L:7635331-7635451 1.0000 120 chr2L:18505640-18505760 1.0000 120 chr2L:10231193-10231313 1.0000 120 chr2L:871477-871597 1.0000 120 chr2R:14411699-14411819 1.0000 120 chr2R:22450470-22450590 1.0000 120 chr3L:199204-199324 1.0000 120 chr2R:21323306-21323426 1.0000 120 chr2L:22121756-22121876 1.0000 120 chr2L:22130028-22130148 1.0000 120 chr2L:8083805-8083925 1.0000 120 chr3R:23872908-23873028 1.0000 120 chr2R:16202854-16202974 1.0000 120 chr2L:7532795-7532915 1.0000 120 chr2L:8982747-8982867 1.0000 120 chr3R:23300728-23300848 1.0000 120 chr4:443998-444118 1.0000 120 chr2L:10505015-10505135 1.0000 120 chr3L:16544384-16544504 1.0000 120 chrX:1880356-1880476 1.0000 120 chr2R:7939205-7939325 1.0000 120 chr3R:29757355-29757475 1.0000 120 chr2L:5278545-5278665 1.0000 120 chr2L:13205397-13205517 1.0000 120 chr2L:13296207-13296327 1.0000 120 chr3R:11372753-11372873 1.0000 120 chr2R:4012745-4012865 1.0000 120 chrX:18239465-18239585 1.0000 120 chr3R:23028642-23028762 1.0000 120 chr3L:21509627-21509747 1.0000 120 chr2L:12350978-12351098 1.0000 120 chr3R:18366404-18366524 1.0000 120 chrX:13128090-13128210 1.0000 120 chr2R:11541209-11541329 1.0000 120 chr3R:29771667-29771787 1.0000 120 chr2R:10097055-10097175 1.0000 120 chrX:10326011-10326131 1.0000 120 chrX:1270775-1270895 1.0000 120 chr3L:3450471-3450591 1.0000 120 chrX:17738271-17738391 1.0000 120 chr3L:17949222-17949342 1.0000 120 chr2L:20889918-20890038 1.0000 120 chr3L:7435350-7435470 1.0000 120 chr3L:12850139-12850259 1.0000 120 chr2L:3598608-3598728 1.0000 120 chr3L:4825716-4825836 1.0000 120 chr2R:18351715-18351835 1.0000 120 chr2R:7490413-7490533 1.0000 120 chr3L:11350984-11351104 1.0000 120 chr3R:30022638-30022758 1.0000 120 chr2L:7518903-7519023 1.0000 120 chr2L:838090-838210 1.0000 120 chr3R:14741418-14741538 1.0000 120 chrX:3068364-3068484 1.0000 120 chr2R:8751590-8751710 1.0000 120 chrX:17510672-17510792 1.0000 120 chr2L:858257-858377 1.0000 120 chr2R:7077046-7077166 1.0000 120 chr3R:22041867-22041987 1.0000 120 chr2L:3856473-3856593 1.0000 120 chr2L:3776166-3776286 1.0000 120 chrX:1858954-1859074 1.0000 120 chr2L:10426763-10426883 1.0000 120 chr2L:3477397-3477517 1.0000 120 chr3R:13683819-13683939 1.0000 120 chr3R:23156844-23156964 1.0000 120 chr3R:16834793-16834913 1.0000 120 chr2L:4394072-4394192 1.0000 120 chr3L:224216-224336 1.0000 120 chr2R:17698911-17699031 1.0000 120 chr3L:10845150-10845270 1.0000 120 chr2R:11095271-11095391 1.0000 120 chr2L:7702569-7702689 1.0000 120 chrX:11715334-11715454 1.0000 120 chr3R:10648970-10649090 1.0000 120 chr3L:4122466-4122586 1.0000 120 chr2R:21535517-21535637 1.0000 120 chrX:19371730-19371850 1.0000 120 chr3L:3875115-3875235 1.0000 120 chrX:10067692-10067812 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Atf3/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Atf3.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.289 C 0.207 G 0.218 T 0.286 Background letter frequencies (from file dataset with add-one prior applied): A 0.289 C 0.207 G 0.218 T 0.286 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF TGACGTCA MEME-1 width = 8 sites = 67 llr = 569 E-value = 1.7e-029 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::9:3::a pos.-specific C :::9:1a: probability G :8::7::: matrix T a1:1:9:: bits 2.3 2.0 * 1.8 ** 1.6 * * ** Relative 1.4 ***** ** Entropy 1.1 ******** (12.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGACGTCA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:22041867-22041987 33 1.39e-05 AGAGAGAAAC TGACGTCA CAAGATGGGT chr3R:11220009-11220129 107 1.39e-05 GTTACATCGA TGACGTCA CAAAAT chr3L:8628199-8628319 85 1.39e-05 ACTCGAACGA TGACGTCA GCACATAACA chrX:8574923-8575043 105 1.39e-05 TTTGACGCTC TGACGTCA GCTGGATA chr3R:27150129-27150249 48 1.39e-05 GGCCAAAGGC TGACGTCA CAACGGCACA chr2R:14576990-14577110 52 1.39e-05 ACGACGCCCG TGACGTCA CCACCCGAGA chrX:18371624-18371744 87 1.39e-05 AACGTTGTCA TGACGTCA TTCAACCGAA chr2R:6758951-6759071 14 1.39e-05 TGTCATCCGG TGACGTCA CGGACAACGC chr3R:8357640-8357760 76 1.39e-05 ACTCCATCGA TGACGTCA TGGTCATATT chr2R:17111184-17111304 41 1.39e-05 TGCCGGCAGC TGACGTCA TCGGTTCTCG chr2L:5001466-5001586 110 1.39e-05 TTTTGGGATC TGACGTCA GCA chr3R:11648975-11649095 81 1.39e-05 CGCCTAGGTG TGACGTCA GCGACCGAAA chr3L:441800-441920 101 1.39e-05 AGCAGGCGCG TGACGTCA GCAGACTAAA chr3R:19632732-19632852 37 1.39e-05 TTTTCACGAG TGACGTCA CCGTTGTCGC chr2R:23046151-23046271 17 1.39e-05 CCCCGCCGCC TGACGTCA TACCTGCCGA chr2R:19450731-19450851 8 1.39e-05 GTTAAAA TGACGTCA TGTTTTCTCT chr2R:6812371-6812491 8 1.39e-05 GCCGCCA TGACGTCA CCTTTTTGTT chr2L:6075330-6075450 43 3.24e-05 ATAAAACGAA TGACATCA TGTTAGCCCC chr3R:21856736-21856856 91 3.24e-05 ATTAAATCGA TGACATCA TAACACCCAA chr2R:14186479-14186599 7 3.24e-05 CCGGTA TGACATCA TCCGGGCCGA chr2R:7567023-7567143 42 3.24e-05 CGTTCAACGA TGACATCA TCGACATTGT chrX:19608209-19608329 90 3.24e-05 AAAATATGCA TGACATCA TTGTCATCAG chrX:8881830-8881950 48 3.24e-05 GCACAAATTA TGACATCA TGCCACATTT chrX:17657853-17657973 59 3.24e-05 CCACCGATGA TGACATCA TTCGGTTTTC chr2R:14766959-14767079 60 3.24e-05 aaACACAAAT TGACATCA TTTTCGAATA chr3R:26540630-26540750 109 3.24e-05 GCAGTGGCAA TGACATCA TTTG chr2L:9134461-9134581 84 3.24e-05 TGGCTTCGTA TGACATCA TAGTTGGGCG chrX:16766998-16767118 49 3.24e-05 AACACCAAGG TGACATCA CTGTGAACTC chr4:416495-416615 74 3.24e-05 AAAATAAAGA TGACATCA GATATAGATG chr2L:14341094-14341214 55 3.24e-05 CTCACAGTCA TGACATCA TCGGGGTCAG chr3L:1578776-1578896 74 4.24e-05 GCCGCAGCCA TGACGCCA TGTTGCGGGC chr2L:4576637-4576757 17 4.24e-05 TCAACGTCAC TGACGCCA TCCCCGTCTC chrX:11557696-11557816 13 4.24e-05 TCAAAAACGA TGACGCCA CCGGTGACGC chr3R:15292855-15292975 44 4.24e-05 TTACAGCATA TGACGCCA TCGCTCCGCC chr2L:20714685-20714805 95 6.07e-05 GGCCCGGCTA TTACGTCA TTTGGGGCCA chr3L:4104063-4104183 66 6.07e-05 GTAAGTTGAA TTACGTCA TCGTTTCGAG chr3R:7188127-7188247 57 6.07e-05 ctctctAATG TTACGTCA CTTTCCCACG chr2R:24763054-24763174 25 6.07e-05 CTGCTTCAGA TTACGTCA CGAACTGGTT chr3L:3149130-3149250 109 6.07e-05 GCGTATATAA TTACGTCA TAAG chr2L:8740190-8740310 84 6.07e-05 AGAGGCGCGC TTACGTCA TTCATAATAT chr3L:4122466-4122586 70 7.99e-05 ATGGCATTGA TGATGTCA TACCGCTTTG chr3L:11350984-11351104 104 7.99e-05 CTTTGCATGG TGATGTCA CAAGAATAA chrX:12470503-12470623 1 7.99e-05 . TGATGTCA TGTTTGTTGG chr3R:7793998-7794118 30 7.99e-05 CGCCAAGTGA TGATGTCA CTGACATCCC chrX:9075869-9075989 61 7.99e-05 ATGTGCACGA TGATGTCA GCGTGGTAGC chrX:1242160-1242280 93 7.99e-05 CTGCAAGATA TGATGTCA CCGTCTGTTT chr2R:23062524-23062644 29 7.99e-05 TTGATGGGAA TGATGTCA GTCTGCAAAA chr3R:13683819-13683939 20 9.04e-05 ATAACAATGG TGGCGTCA CAGGGGTGCT chr2R:21073640-21073760 22 9.04e-05 TCACTTATTT TGGCGTCA TGTGCCGCTT chr3L:8675215-8675335 35 9.04e-05 CGCACTGGGG TGGCGTCA TATAGCCAGC chr3R:22447383-22447503 40 1.14e-04 GGGTTATTTA TGACACCA TGGGTAGGTC chr2R:17027544-17027664 88 1.14e-04 ATCGAATGTA TGACGGCA TATGTGTATT chr3R:4453805-4453925 33 1.14e-04 CGTGTGTAGG TGACGGCA TTATGTCATC chr3R:9883807-9883927 63 1.24e-04 GGCGCGGTGG CGACGTCA TCGCCCAAAA chr3R:8108269-8108389 29 1.24e-04 GTGACATCGA CGACGTCA TCATCAACGG chrX:7110228-7110348 92 1.38e-04 TGGCTCTGCG TCACGTCA CCTCGCATCG chr2L:8084766-8084886 64 1.38e-04 gaggagacaa TCACGTCA TCCAGCCTGC chr2R:19449679-19449799 23 1.81e-04 CCGATGCGGC TTACATCA CCGGTTGTTC chrX:2652581-2652701 13 1.81e-04 AGCATTCGCC TGACGTAA ATGCTGCCAC chr3R:21187400-21187520 37 1.81e-04 TCTCGGGCCA TGACGTAA TACAAAAGCG chr2R:8725513-8725633 60 1.81e-04 CTTCAAGTGG TGACGTAA TTTAAAGCGC chr3L:12850139-12850259 47 2.20e-04 AATCATCAGC TGTCGTCA GTTTTCTAGA chr2R:11047238-11047358 108 2.20e-04 AATACCATCA TGATATCA GCCAA chr3L:18771232-18771352 75 2.20e-04 GTCTTTGCGT TGTCGTCA TCGCAAGCAA chr2R:7046142-7046262 54 2.20e-04 GGTCGGTGGA TGATATCA TCTCGGGTGC chrX:3068364-3068484 22 2.34e-04 TAAATTTCAC TTACGCCA ACGCTCACAC chr3L:779194-779314 70 2.34e-04 TTCGATACGC TTACGCCA GAGTCTACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:22041867-22041987 1.4e-05 32_[+1]_80 chr3R:11220009-11220129 1.4e-05 106_[+1]_6 chr3L:8628199-8628319 1.4e-05 84_[+1]_28 chrX:8574923-8575043 1.4e-05 104_[+1]_8 chr3R:27150129-27150249 1.4e-05 47_[+1]_65 chr2R:14576990-14577110 1.4e-05 51_[+1]_61 chrX:18371624-18371744 1.4e-05 86_[+1]_26 chr2R:6758951-6759071 1.4e-05 13_[+1]_99 chr3R:8357640-8357760 1.4e-05 75_[+1]_37 chr2R:17111184-17111304 1.4e-05 40_[+1]_72 chr2L:5001466-5001586 1.4e-05 109_[+1]_3 chr3R:11648975-11649095 1.4e-05 80_[+1]_32 chr3L:441800-441920 1.4e-05 100_[+1]_12 chr3R:19632732-19632852 1.4e-05 36_[+1]_76 chr2R:23046151-23046271 1.4e-05 16_[+1]_96 chr2R:19450731-19450851 1.4e-05 7_[+1]_105 chr2R:6812371-6812491 1.4e-05 7_[+1]_105 chr2L:6075330-6075450 3.2e-05 42_[+1]_70 chr3R:21856736-21856856 3.2e-05 90_[+1]_22 chr2R:14186479-14186599 3.2e-05 6_[+1]_106 chr2R:7567023-7567143 3.2e-05 41_[+1]_71 chrX:19608209-19608329 3.2e-05 89_[+1]_23 chrX:8881830-8881950 3.2e-05 47_[+1]_65 chrX:17657853-17657973 3.2e-05 58_[+1]_54 chr2R:14766959-14767079 3.2e-05 59_[+1]_53 chr3R:26540630-26540750 3.2e-05 108_[+1]_4 chr2L:9134461-9134581 3.2e-05 83_[+1]_29 chrX:16766998-16767118 3.2e-05 48_[+1]_64 chr4:416495-416615 3.2e-05 73_[+1]_39 chr2L:14341094-14341214 3.2e-05 54_[+1]_58 chr3L:1578776-1578896 4.2e-05 73_[+1]_39 chr2L:4576637-4576757 4.2e-05 16_[+1]_96 chrX:11557696-11557816 4.2e-05 12_[+1]_100 chr3R:15292855-15292975 4.2e-05 43_[+1]_69 chr2L:20714685-20714805 6.1e-05 94_[+1]_18 chr3L:4104063-4104183 6.1e-05 65_[+1]_47 chr3R:7188127-7188247 6.1e-05 56_[+1]_56 chr2R:24763054-24763174 6.1e-05 24_[+1]_88 chr3L:3149130-3149250 6.1e-05 108_[+1]_4 chr2L:8740190-8740310 6.1e-05 83_[+1]_29 chr3L:4122466-4122586 8e-05 69_[+1]_43 chr3L:11350984-11351104 8e-05 103_[+1]_9 chrX:12470503-12470623 8e-05 [+1]_112 chr3R:7793998-7794118 8e-05 29_[+1]_83 chrX:9075869-9075989 8e-05 60_[+1]_52 chrX:1242160-1242280 8e-05 92_[+1]_20 chr2R:23062524-23062644 8e-05 28_[+1]_84 chr3R:13683819-13683939 9e-05 19_[+1]_93 chr2R:21073640-21073760 9e-05 21_[+1]_91 chr3L:8675215-8675335 9e-05 34_[+1]_78 chr3R:22447383-22447503 0.00011 39_[+1]_73 chr2R:17027544-17027664 0.00011 87_[+1]_25 chr3R:4453805-4453925 0.00011 32_[+1]_80 chr3R:9883807-9883927 0.00012 62_[+1]_50 chr3R:8108269-8108389 0.00012 28_[+1]_84 chrX:7110228-7110348 0.00014 91_[+1]_21 chr2L:8084766-8084886 0.00014 63_[+1]_49 chr2R:19449679-19449799 0.00018 22_[+1]_90 chrX:2652581-2652701 0.00018 12_[+1]_100 chr3R:21187400-21187520 0.00018 36_[+1]_76 chr2R:8725513-8725633 0.00018 59_[+1]_53 chr3L:12850139-12850259 0.00022 46_[+1]_66 chr2R:11047238-11047358 0.00022 107_[+1]_5 chr3L:18771232-18771352 0.00022 74_[+1]_38 chr2R:7046142-7046262 0.00022 53_[+1]_59 chrX:3068364-3068484 0.00023 21_[+1]_91 chr3L:779194-779314 0.00023 69_[+1]_43 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGACGTCA width=8 seqs=67 chr3R:22041867-22041987 ( 33) TGACGTCA 1 chr3R:11220009-11220129 ( 107) TGACGTCA 1 chr3L:8628199-8628319 ( 85) TGACGTCA 1 chrX:8574923-8575043 ( 105) TGACGTCA 1 chr3R:27150129-27150249 ( 48) TGACGTCA 1 chr2R:14576990-14577110 ( 52) TGACGTCA 1 chrX:18371624-18371744 ( 87) TGACGTCA 1 chr2R:6758951-6759071 ( 14) TGACGTCA 1 chr3R:8357640-8357760 ( 76) TGACGTCA 1 chr2R:17111184-17111304 ( 41) TGACGTCA 1 chr2L:5001466-5001586 ( 110) TGACGTCA 1 chr3R:11648975-11649095 ( 81) TGACGTCA 1 chr3L:441800-441920 ( 101) TGACGTCA 1 chr3R:19632732-19632852 ( 37) TGACGTCA 1 chr2R:23046151-23046271 ( 17) TGACGTCA 1 chr2R:19450731-19450851 ( 8) TGACGTCA 1 chr2R:6812371-6812491 ( 8) TGACGTCA 1 chr2L:6075330-6075450 ( 43) TGACATCA 1 chr3R:21856736-21856856 ( 91) TGACATCA 1 chr2R:14186479-14186599 ( 7) TGACATCA 1 chr2R:7567023-7567143 ( 42) TGACATCA 1 chrX:19608209-19608329 ( 90) TGACATCA 1 chrX:8881830-8881950 ( 48) TGACATCA 1 chrX:17657853-17657973 ( 59) TGACATCA 1 chr2R:14766959-14767079 ( 60) TGACATCA 1 chr3R:26540630-26540750 ( 109) TGACATCA 1 chr2L:9134461-9134581 ( 84) TGACATCA 1 chrX:16766998-16767118 ( 49) TGACATCA 1 chr4:416495-416615 ( 74) TGACATCA 1 chr2L:14341094-14341214 ( 55) TGACATCA 1 chr3L:1578776-1578896 ( 74) TGACGCCA 1 chr2L:4576637-4576757 ( 17) TGACGCCA 1 chrX:11557696-11557816 ( 13) TGACGCCA 1 chr3R:15292855-15292975 ( 44) TGACGCCA 1 chr2L:20714685-20714805 ( 95) TTACGTCA 1 chr3L:4104063-4104183 ( 66) TTACGTCA 1 chr3R:7188127-7188247 ( 57) TTACGTCA 1 chr2R:24763054-24763174 ( 25) TTACGTCA 1 chr3L:3149130-3149250 ( 109) TTACGTCA 1 chr2L:8740190-8740310 ( 84) TTACGTCA 1 chr3L:4122466-4122586 ( 70) TGATGTCA 1 chr3L:11350984-11351104 ( 104) TGATGTCA 1 chrX:12470503-12470623 ( 1) TGATGTCA 1 chr3R:7793998-7794118 ( 30) TGATGTCA 1 chrX:9075869-9075989 ( 61) TGATGTCA 1 chrX:1242160-1242280 ( 93) TGATGTCA 1 chr2R:23062524-23062644 ( 29) TGATGTCA 1 chr3R:13683819-13683939 ( 20) TGGCGTCA 1 chr2R:21073640-21073760 ( 22) TGGCGTCA 1 chr3L:8675215-8675335 ( 35) TGGCGTCA 1 chr3R:22447383-22447503 ( 40) TGACACCA 1 chr2R:17027544-17027664 ( 88) TGACGGCA 1 chr3R:4453805-4453925 ( 33) TGACGGCA 1 chr3R:9883807-9883927 ( 63) CGACGTCA 1 chr3R:8108269-8108389 ( 29) CGACGTCA 1 chrX:7110228-7110348 ( 92) TCACGTCA 1 chr2L:8084766-8084886 ( 64) TCACGTCA 1 chr2R:19449679-19449799 ( 23) TTACATCA 1 chrX:2652581-2652701 ( 13) TGACGTAA 1 chr3R:21187400-21187520 ( 37) TGACGTAA 1 chr2R:8725513-8725633 ( 60) TGACGTAA 1 chr3L:12850139-12850259 ( 47) TGTCGTCA 1 chr2R:11047238-11047358 ( 108) TGATATCA 1 chr3L:18771232-18771352 ( 75) TGTCGTCA 1 chr2R:7046142-7046262 ( 54) TGATATCA 1 chrX:3068364-3068484 ( 22) TTACGCCA 1 chr3L:779194-779314 ( 70) TTACGCCA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.49857 E= 1.7e-029 -1271 -280 -1271 176 -1271 -280 194 -109 168 -1271 -228 -326 -1271 206 -1271 -109 -19 -1271 178 -1271 -1271 -99 -287 160 -269 220 -1271 -1271 179 -1271 -1271 -1271 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 1.7e-029 0.000000 0.029851 0.000000 0.970149 0.000000 0.029851 0.835821 0.134328 0.925373 0.000000 0.044776 0.029851 0.000000 0.865672 0.000000 0.134328 0.253731 0.000000 0.746269 0.000000 0.000000 0.104478 0.029851 0.865672 0.044776 0.955224 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGACGTCA MEME-1 regular expression -------------------------------------------------------------------------------- TGAC[GA]TCA -------------------------------------------------------------------------------- Time 7.41 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCGCC MEME-2 width = 8 sites = 3 llr = 37 E-value = 1.6e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aa:aa probability G ::a::a:: matrix T :::::::: bits 2.3 ******** 2.0 ******** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (18.0 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:698961-699081 44 3.74e-06 GATGCGTGAA CCGCCGCC AACGAACGTT chr3R:10605223-10605343 1 3.74e-06 . CCGCCGCC GCTGCGTGCG chr2R:23046151-23046271 9 3.74e-06 GAAATCCC CCGCCGCC TGACGTCATA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:698961-699081 3.7e-06 43_[+2]_69 chr3R:10605223-10605343 3.7e-06 [+2]_112 chr2R:23046151-23046271 3.7e-06 8_[+2]_104 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCGCC width=8 seqs=3 chr3L:698961-699081 ( 44) CCGCCGCC 1 chr3R:10605223-10605343 ( 1) CCGCCGCC 1 chr2R:23046151-23046271 ( 9) CCGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.6483 E= 1.6e+004 -823 227 -823 -823 -823 227 -823 -823 -823 -823 219 -823 -823 227 -823 -823 -823 227 -823 -823 -823 -823 219 -823 -823 227 -823 -823 -823 227 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.6e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCGCC MEME-2 regular expression -------------------------------------------------------------------------------- CCGCCGCC -------------------------------------------------------------------------------- Time 13.61 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCTCGC MEME-3 width = 8 sites = 9 llr = 96 E-value = 1.3e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCTCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A 2:2::::: pos.-specific C 8a:a:a1a probability G ::8:::9: matrix T ::::a::: bits 2.3 * * * * 2.0 * * * * 1.8 * ***** 1.6 * ***** Relative 1.4 ******** Entropy 1.1 ******** (15.3 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCTCGC consensus A A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1858954-1859074 17 5.17e-06 ACCAGTGTGA CCGCTCGC CGAGAAGACG chr3L:199204-199324 44 5.17e-06 AGGCGCCCTC CCGCTCGC ACATAGCACG chr3R:6664480-6664600 52 5.17e-06 TTTGAATTTC CCGCTCGC GGGCAAACAA chr2L:1974191-1974311 65 5.17e-06 GCGTGTGGTA CCGCTCGC TGCCCCGCTT chr3R:18366404-18366524 36 1.20e-05 GGGGACATCT CCACTCGC AGAGCCTGTG chr2L:7339746-7339866 1 1.20e-05 . CCACTCGC ATGTTGACAA chr3R:4403691-4403811 24 1.92e-05 ACACCACTAC ACGCTCGC GGCACTGCTC chr2R:6812371-6812491 30 1.92e-05 TTTGTTATTC ACGCTCGC CGCGAATTTG chr3R:28861642-28861762 112 2.41e-05 cctcttctct ccgctccc c -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1858954-1859074 5.2e-06 16_[+3]_96 chr3L:199204-199324 5.2e-06 43_[+3]_69 chr3R:6664480-6664600 5.2e-06 51_[+3]_61 chr2L:1974191-1974311 5.2e-06 64_[+3]_48 chr3R:18366404-18366524 1.2e-05 35_[+3]_77 chr2L:7339746-7339866 1.2e-05 [+3]_112 chr3R:4403691-4403811 1.9e-05 23_[+3]_89 chr2R:6812371-6812491 1.9e-05 29_[+3]_83 chr3R:28861642-28861762 2.4e-05 111_[+3]_1 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCTCGC width=8 seqs=9 chrX:1858954-1859074 ( 17) CCGCTCGC 1 chr3L:199204-199324 ( 44) CCGCTCGC 1 chr3R:6664480-6664600 ( 52) CCGCTCGC 1 chr2L:1974191-1974311 ( 65) CCGCTCGC 1 chr3R:18366404-18366524 ( 36) CCACTCGC 1 chr2L:7339746-7339866 ( 1) CCACTCGC 1 chr3R:4403691-4403811 ( 24) ACGCTCGC 1 chr2R:6812371-6812491 ( 30) ACGCTCGC 1 chr3R:28861642-28861762 ( 112) CCGCTCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.4638 E= 1.3e+004 -38 191 -982 -982 -982 227 -982 -982 -38 -982 183 -982 -982 227 -982 -982 -982 -982 -982 180 -982 227 -982 -982 -982 -90 203 -982 -982 227 -982 -982 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.3e+004 0.222222 0.777778 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.222222 0.000000 0.777778 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.111111 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCTCGC MEME-3 regular expression -------------------------------------------------------------------------------- [CA]C[GA]CTCGC -------------------------------------------------------------------------------- Time 19.82 secs. ******************************************************************************** ******************************************************************************** MOTIF CCTCCCCC MEME-4 width = 8 sites = 3 llr = 37 E-value = 1.7e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aaaaa probability G :::::::: matrix T ::a::::: bits 2.3 ** ***** 2.0 ** ***** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (17.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCTCCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:6075330-6075450 64 4.66e-06 TAGCCCCCTC CCTCCCCC TCCcacacac chr3R:4805007-4805127 98 4.66e-06 CTGTGCCCTA CCTCCCCC TTTGAAAACC chr3R:15292855-15292975 67 4.66e-06 CCGCCCTTTC CCTCCCCC TCTCTCTCCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:6075330-6075450 4.7e-06 63_[+4]_49 chr3R:4805007-4805127 4.7e-06 97_[+4]_15 chr3R:15292855-15292975 4.7e-06 66_[+4]_46 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCTCCCCC width=8 seqs=3 chr2L:6075330-6075450 ( 64) CCTCCCCC 1 chr3R:4805007-4805127 ( 98) CCTCCCCC 1 chr3R:15292855-15292975 ( 67) CCTCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.8598 E= 1.7e+004 -823 227 -823 -823 -823 227 -823 -823 -823 -823 -823 180 -823 227 -823 -823 -823 227 -823 -823 -823 227 -823 -823 -823 227 -823 -823 -823 227 -823 -823 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.7e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCTCCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CCTCCCCC -------------------------------------------------------------------------------- Time 25.99 secs. ******************************************************************************** ******************************************************************************** MOTIF GMGAGCGA MEME-5 width = 8 sites = 16 llr = 156 E-value = 8.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GMGAGCGA MEME-5 Description -------------------------------------------------------------------------------- Simplified A :5:9:1:8 pos.-specific C :5:1:9:1 probability G a:a:a:a1 matrix T :::::::: bits 2.3 * * * * 2.0 * * * * 1.8 * * *** 1.6 * ***** Relative 1.4 * ***** Entropy 1.1 ******* (14.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GAGAGCGA consensus C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGCGA MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:22024531-22024651 25 8.08e-06 AGTCTAAAGC GCGAGCGA GAGAGGACTA chr2L:19629441-19629561 24 8.08e-06 GTTCCCATTT GCGAGCGA AAGTCTGGCT chr2R:12438843-12438963 83 8.08e-06 GGAGGGGGCT GCGAGCGA GTGCGGGAGT chr2R:23046151-23046271 79 8.08e-06 GGCAAGACAa gcgagcga gcgggacgac chr3R:9704567-9704687 68 1.94e-05 CAGTGTTGGT GAGAGCGA TCCGACTCTC chr2L:1643686-1643806 58 1.94e-05 GTGGAAGCGG GAGAGCGA ATGTGTGGAA chr2L:20714685-20714805 14 1.94e-05 gagagcgagt gagagcga gagtgagtgt chr3R:17682591-17682711 34 1.94e-05 GCTACGTGGG GAGAGCGA TGTTTTTATC chr3R:21187400-21187520 58 1.94e-05 AAAAGCGTGC GAGAGCGA GAAGGAATCG chr3R:19632732-19632852 91 1.94e-05 gagagaggtg gagagcga gcgccacagc chr3L:1578776-1578896 53 3.13e-05 CAGTGTGTGT GCGAGCGG GATGCCGCAG chr3R:4453805-4453925 51 3.13e-05 TTATGTCATC GCGAGCGG GAGAGCTCAA chr2L:13290925-13291045 36 3.13e-05 GAGCGGAGTC GCGAGCGC GCCAAACACT chrX:17657853-17657973 80 4.78e-05 GGTTTTCGTT GAGAGCGC GTAGCGTGCG chr3L:21509627-21509747 60 6.17e-05 CGAATTTTTA GAGCGCGA AATATCCACC chr3R:22041867-22041987 7 7.30e-05 TAGGGT GCGAGAGA GCCAAGTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGCGA MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:22024531-22024651 8.1e-06 24_[+5]_88 chr2L:19629441-19629561 8.1e-06 23_[+5]_89 chr2R:12438843-12438963 8.1e-06 82_[+5]_30 chr2R:23046151-23046271 8.1e-06 78_[+5]_34 chr3R:9704567-9704687 1.9e-05 67_[+5]_45 chr2L:1643686-1643806 1.9e-05 57_[+5]_55 chr2L:20714685-20714805 1.9e-05 13_[+5]_99 chr3R:17682591-17682711 1.9e-05 33_[+5]_79 chr3R:21187400-21187520 1.9e-05 57_[+5]_55 chr3R:19632732-19632852 1.9e-05 90_[+5]_22 chr3L:1578776-1578896 3.1e-05 52_[+5]_60 chr3R:4453805-4453925 3.1e-05 50_[+5]_62 chr2L:13290925-13291045 3.1e-05 35_[+5]_77 chrX:17657853-17657973 4.8e-05 79_[+5]_33 chr3L:21509627-21509747 6.2e-05 59_[+5]_53 chr3R:22041867-22041987 7.3e-05 6_[+5]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGCGA MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GMGAGCGA width=8 seqs=16 chr2L:22024531-22024651 ( 25) GCGAGCGA 1 chr2L:19629441-19629561 ( 24) GCGAGCGA 1 chr2R:12438843-12438963 ( 83) GCGAGCGA 1 chr2R:23046151-23046271 ( 79) GCGAGCGA 1 chr3R:9704567-9704687 ( 68) GAGAGCGA 1 chr2L:1643686-1643806 ( 58) GAGAGCGA 1 chr2L:20714685-20714805 ( 14) GAGAGCGA 1 chr3R:17682591-17682711 ( 34) GAGAGCGA 1 chr3R:21187400-21187520 ( 58) GAGAGCGA 1 chr3R:19632732-19632852 ( 91) GAGAGCGA 1 chr3L:1578776-1578896 ( 53) GCGAGCGG 1 chr3R:4453805-4453925 ( 51) GCGAGCGG 1 chr2L:13290925-13291045 ( 36) GCGAGCGC 1 chrX:17657853-17657973 ( 80) GAGAGCGC 1 chr3L:21509627-21509747 ( 60) GAGCGCGA 1 chr3R:22041867-22041987 ( 7) GCGAGAGA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGCGA MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.1076 E= 8.1e+003 -1064 -1064 220 -1064 79 127 -1064 -1064 -1064 -1064 220 -1064 170 -173 -1064 -1064 -1064 -1064 220 -1064 -220 218 -1064 -1064 -1064 -1064 220 -1064 138 -73 -80 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGCGA MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 8.1e+003 0.000000 0.000000 1.000000 0.000000 0.500000 0.500000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.937500 0.062500 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.062500 0.937500 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.125000 0.125000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GMGAGCGA MEME-5 regular expression -------------------------------------------------------------------------------- G[AC]GAGCGA -------------------------------------------------------------------------------- Time 32.15 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:6812371-6812491 7.48e-04 7_[+1(1.39e-05)]_14_[+3(1.92e-05)]_\ 83 chr2R:23062524-23062644 2.45e-01 28_[+1(7.99e-05)]_84 chr2R:19450731-19450851 6.22e-03 7_[+1(1.39e-05)]_105 chr2L:14341094-14341214 1.48e-01 54_[+1(3.24e-05)]_58 chr2R:7046142-7046262 8.26e-02 120 chr2R:23046151-23046271 2.90e-07 8_[+2(3.74e-06)]_[+1(1.39e-05)]_54_\ [+5(8.08e-06)]_34 chr4:416495-416615 1.87e-01 73_[+1(3.24e-05)]_39 chrX:1242160-1242280 6.93e-03 92_[+1(7.99e-05)]_20 chr3R:19632732-19632852 4.69e-04 11_[+5(4.78e-05)]_17_[+1(1.39e-05)]_\ 46_[+5(1.94e-05)]_10_[+5(1.94e-05)]_4 chr3L:441800-441920 3.09e-04 100_[+1(1.39e-05)]_12 chrX:16766998-16767118 3.01e-03 48_[+1(3.24e-05)]_64 chr2R:16270696-16270816 8.18e-01 120 chr2R:8725513-8725633 2.63e-01 120 chr2L:8740190-8740310 1.07e-01 83_[+1(6.07e-05)]_29 chr3R:12691792-12691912 4.04e-01 120 chr3L:3149130-3149250 3.32e-02 108_[+1(6.07e-05)]_4 chr2L:13290925-13291045 4.93e-02 35_[+5(3.13e-05)]_77 chr2L:9134461-9134581 1.75e-01 83_[+1(3.24e-05)]_29 chr3R:11648975-11649095 4.01e-03 1_[+5(8.88e-05)]_[+5(8.88e-05)]_\ [+5(8.88e-05)]_55_[+1(1.39e-05)]_32 chr2L:6644394-6644514 6.83e-01 120 chr2L:5001466-5001586 2.40e-02 109_[+1(1.39e-05)]_3 chr3R:15292855-15292975 3.23e-05 43_[+1(4.24e-05)]_15_[+4(4.66e-06)]_\ 46 chr3R:26540630-26540750 4.75e-02 108_[+1(3.24e-05)]_4 chr3R:4453805-4453925 1.83e-06 50_[+5(3.13e-05)]_13_[+4(1.63e-05)]_\ 41 chr3L:18771232-18771352 2.87e-04 120 chr2R:24763054-24763174 1.18e-01 24_[+1(6.07e-05)]_88 chr3R:24918517-24918637 2.98e-01 120 chr2R:17111184-17111304 9.75e-02 40_[+1(1.39e-05)]_72 chr2R:24515142-24515262 8.04e-01 120 chr3R:24026227-24026347 9.68e-01 120 chrX:11557696-11557816 4.31e-02 12_[+1(4.24e-05)]_100 chr3R:18628626-18628746 5.78e-01 120 chr2R:17027544-17027664 5.41e-02 120 chr2R:6991812-6991932 1.35e-02 120 chr2L:8084766-8084886 5.59e-02 120 chr3R:21187400-21187520 1.69e-02 57_[+5(1.94e-05)]_12_[+5(8.88e-05)]_\ 35 chr2R:18835550-18835670 6.26e-01 120 chr3R:8357640-8357760 2.03e-03 75_[+1(1.39e-05)]_37 chrX:1279183-1279303 9.84e-01 120 chr2R:14766959-14767079 6.93e-03 59_[+1(3.24e-05)]_53 chr3R:8801431-8801551 6.97e-01 120 chr2R:23072406-23072526 2.33e-01 120 chrX:17657853-17657973 8.72e-04 58_[+1(3.24e-05)]_13_[+5(4.78e-05)]_\ 33 chr2R:7566824-7566944 7.52e-01 120 chrX:10814774-10814894 9.02e-01 120 chrX:6796263-6796383 7.01e-01 120 chr2R:6758951-6759071 1.23e-02 13_[+1(1.39e-05)]_99 chr2L:4576637-4576757 5.19e-03 16_[+1(4.24e-05)]_96 chrX:8881830-8881950 1.67e-01 47_[+1(3.24e-05)]_65 chrX:11558536-11558656 2.73e-01 120 chr2L:20758447-20758567 7.07e-01 120 chrX:12075677-12075797 4.25e-01 120 chrX:18371624-18371744 3.86e-03 68_[+5(9.73e-05)]_10_[+1(1.39e-05)]_\ 26 chrX:2652581-2652701 3.21e-02 120 chr2R:12034030-12034150 7.04e-01 120 chrX:9075869-9075989 1.50e-01 60_[+1(7.99e-05)]_52 chrX:6310542-6310662 9.97e-01 120 chr2L:4336252-4336372 7.52e-01 120 chr3R:18738219-18738339 4.11e-01 120 chr3L:1794249-1794369 7.30e-01 120 chr2R:14576990-14577110 1.02e-02 51_[+1(1.39e-05)]_61 chr2R:12438843-12438963 1.97e-03 39_[+5(5.36e-05)]_35_[+5(8.08e-06)]_\ 30 chr2L:1974191-1974311 4.57e-03 64_[+3(5.17e-06)]_48 chr3L:11918374-11918494 4.07e-01 120 chrX:3538919-3539039 9.76e-01 120 chrX:19884402-19884522 9.42e-01 120 chr3L:779194-779314 1.87e-02 120 chr3R:8108269-8108389 1.07e-01 120 chr2R:19449679-19449799 1.66e-02 120 chrX:19608209-19608329 1.21e-04 13_[+3(8.07e-05)]_68_[+1(3.24e-05)]_\ 23 chr3R:17682591-17682711 1.02e-01 33_[+5(1.94e-05)]_79 chr3R:7188127-7188247 3.47e-02 56_[+1(6.07e-05)]_56 chr2R:7669020-7669140 1.00e+00 120 chr2L:19629441-19629561 9.69e-02 23_[+5(8.08e-06)]_89 chr2R:22379284-22379404 3.58e-01 120 chr3R:31696775-31696895 1.00e+00 120 chr3R:31709862-31709982 1.00e+00 120 chr3L:4104063-4104183 2.60e-01 65_[+1(6.07e-05)]_47 chr3R:14019643-14019763 2.67e-01 120 chr2L:22024531-22024651 1.05e-02 24_[+5(8.08e-06)]_88 chr2L:20714685-20714805 8.04e-03 3_[+5(1.94e-05)]_2_[+5(1.94e-05)]_\ 37_[+5(3.13e-05)]_28_[+1(6.07e-05)]_18 chr3R:15425741-15425861 6.57e-01 120 chr2R:11047238-11047358 1.70e-01 120 chr3R:10884830-10884950 9.78e-01 120 chr2R:16103059-16103179 2.63e-01 120 chrX:8671472-8671592 9.98e-01 120 chr2R:7567023-7567143 1.80e-01 41_[+1(3.24e-05)]_71 chrX:3714125-3714245 2.69e-01 120 chr3R:11157035-11157155 6.85e-01 120 chr3R:13802407-13802527 3.67e-01 120 chr3R:9883807-9883927 4.50e-04 82_[+2(3.06e-05)]_30 chr3L:9028200-9028320 1.00e+00 120 chr3R:4805007-4805127 1.51e-03 97_[+4(4.66e-06)]_15 chr2L:19200338-19200458 9.30e-01 120 chr3R:31712692-31712812 9.89e-01 120 chr2L:7339746-7339866 8.01e-02 [+3(1.20e-05)]_112 chr3R:29696451-29696571 3.61e-01 120 chr3R:10605223-10605343 1.59e-03 [+2(3.74e-06)]_112 chrX:19839283-19839403 2.61e-01 120 chr3R:7793998-7794118 7.79e-02 29_[+1(7.99e-05)]_83 chr3R:27150129-27150249 3.75e-03 47_[+1(1.39e-05)]_65 chr3L:3080689-3080809 9.52e-01 120 chr2R:14186479-14186599 1.36e-03 6_[+1(3.24e-05)]_106 chrX:8574923-8575043 1.04e-01 104_[+1(1.39e-05)]_8 chr3R:21856736-21856856 2.40e-01 90_[+1(3.24e-05)]_22 chr3R:30815076-30815196 6.95e-01 120 chr3R:21993034-21993154 5.28e-01 120 chr3R:16907905-16908025 1.00e+00 120 chrX:19898012-19898132 9.35e-01 120 chr3R:30563174-30563294 2.12e-01 120 chr2L:11272018-11272138 7.05e-01 120 chrX:16683896-16684016 4.72e-01 120 chr2L:889955-890075 8.79e-01 120 chrX:7110228-7110348 8.38e-02 120 chrX:11137699-11137819 9.64e-01 120 chr3R:9793236-9793356 7.58e-03 120 chr3L:6140329-6140449 9.85e-01 120 chr3L:15794392-15794512 9.91e-01 120 chr3R:8349452-8349572 5.67e-01 120 chr2R:21527354-21527474 9.91e-01 120 chr2R:9143851-9143971 1.14e-01 120 chr3R:8105894-8106014 3.02e-01 120 chrX:11154006-11154126 9.48e-01 120 chr3L:8675215-8675335 3.21e-02 34_[+1(9.04e-05)]_78 chr3R:8119916-8120036 3.08e-02 120 chr3L:5182448-5182568 9.71e-01 120 chr2L:1643686-1643806 3.32e-02 57_[+5(1.94e-05)]_55 chr3L:1578776-1578896 2.19e-04 52_[+5(3.13e-05)]_13_[+1(4.24e-05)]_\ 39 chr3R:9704567-9704687 1.82e-02 67_[+5(1.94e-05)]_45 chr3R:6664480-6664600 2.47e-02 51_[+3(5.17e-06)]_61 chrX:14839897-14840017 6.43e-01 120 chr3L:8628199-8628319 3.76e-02 84_[+1(1.39e-05)]_28 chr2L:901487-901607 1.65e-01 120 chr3R:28327320-28327440 6.89e-01 120 chr3L:698961-699081 5.88e-04 43_[+2(3.74e-06)]_69 chr2L:6075330-6075450 1.68e-05 42_[+1(3.24e-05)]_13_[+4(4.66e-06)]_\ 49 chr2R:21073640-21073760 3.87e-01 21_[+1(9.04e-05)]_91 chr2L:937109-937229 1.84e-01 120 chr3R:4403691-4403811 3.14e-04 23_[+3(1.92e-05)]_89 chr2L:19233434-19233554 9.55e-01 120 chr3L:13068497-13068617 9.92e-01 120 chr2L:19285698-19285818 7.81e-01 120 chr3L:13015327-13015447 8.36e-01 120 chr3R:10203714-10203834 2.45e-01 120 chr3R:29782606-29782726 9.70e-01 120 chr3R:10628493-10628613 6.75e-01 120 chrX:14583365-14583485 7.74e-01 120 chr3L:4353982-4354102 8.95e-01 120 chr3L:11358859-11358979 1.71e-01 120 chr2R:13214615-13214735 9.93e-01 120 chr3L:16768415-16768535 9.52e-01 120 chr3R:11244149-11244269 8.22e-01 120 chr3R:28861642-28861762 1.02e-02 111_[+3(2.41e-05)]_1 chr3R:4732278-4732398 6.17e-02 120 chr3R:16704382-16704502 9.81e-01 120 chr3R:11220009-11220129 3.98e-02 106_[+1(1.39e-05)]_6 chrX:1236648-1236768 1.93e-01 120 chr3R:22447383-22447503 4.05e-01 120 chr3R:20309396-20309516 5.07e-01 120 chr3L:16147908-16148028 8.05e-01 120 chrX:12470503-12470623 3.22e-01 [+1(7.99e-05)]_112 chr2L:6339624-6339744 8.34e-01 120 chr3R:16847419-16847539 3.11e-02 120 chr3R:30812639-30812759 9.40e-01 120 chr3L:5857086-5857206 9.87e-01 120 chr3R:10024155-10024275 7.23e-01 120 chr3L:11334185-11334305 9.90e-01 120 chr2R:12729306-12729426 9.32e-01 120 chrX:18774907-18775027 8.38e-01 120 chrX:6663329-6663449 6.26e-01 120 chr2L:7635331-7635451 9.98e-01 120 chr2L:18505640-18505760 9.99e-01 120 chr2L:10231193-10231313 9.73e-01 120 chr2L:871477-871597 7.79e-01 120 chr2R:14411699-14411819 4.51e-02 120 chr2R:22450470-22450590 9.91e-01 120 chr3L:199204-199324 2.66e-04 43_[+3(5.17e-06)]_69 chr2R:21323306-21323426 7.69e-01 120 chr2L:22121756-22121876 3.95e-01 120 chr2L:22130028-22130148 9.97e-01 120 chr2L:8083805-8083925 7.82e-01 120 chr3R:23872908-23873028 9.06e-01 120 chr2R:16202854-16202974 3.03e-02 120 chr2L:7532795-7532915 9.99e-01 120 chr2L:8982747-8982867 9.98e-01 120 chr3R:23300728-23300848 9.98e-01 120 chr4:443998-444118 1.00e+00 120 chr2L:10505015-10505135 5.60e-01 120 chr3L:16544384-16544504 9.79e-01 120 chrX:1880356-1880476 9.16e-01 120 chr2R:7939205-7939325 5.95e-02 120 chr3R:29757355-29757475 5.06e-01 120 chr2L:5278545-5278665 9.04e-01 120 chr2L:13205397-13205517 5.28e-03 112_[+2(3.06e-05)] chr2L:13296207-13296327 1.16e-01 120 chr3R:11372753-11372873 1.27e-01 120 chr2R:4012745-4012865 7.12e-01 120 chrX:18239465-18239585 5.47e-01 120 chr3R:23028642-23028762 8.99e-01 120 chr3L:21509627-21509747 6.74e-02 59_[+5(6.17e-05)]_53 chr2L:12350978-12351098 9.61e-01 120 chr3R:18366404-18366524 4.86e-02 35_[+3(1.20e-05)]_77 chrX:13128090-13128210 8.67e-01 120 chr2R:11541209-11541329 9.42e-01 120 chr3R:29771667-29771787 6.88e-01 120 chr2R:10097055-10097175 5.35e-02 120 chrX:10326011-10326131 9.28e-01 120 chrX:1270775-1270895 9.68e-01 120 chr3L:3450471-3450591 9.15e-01 120 chrX:17738271-17738391 2.64e-02 120 chr3L:17949222-17949342 3.48e-01 120 chr2L:20889918-20890038 5.69e-01 120 chr3L:7435350-7435470 1.03e-01 8_[+5(4.78e-05)]_104 chr3L:12850139-12850259 2.38e-01 120 chr2L:3598608-3598728 7.98e-01 120 chr3L:4825716-4825836 4.65e-01 120 chr2R:18351715-18351835 6.79e-01 120 chr2R:7490413-7490533 9.50e-01 120 chr3L:11350984-11351104 2.25e-01 103_[+1(7.99e-05)]_9 chr3R:30022638-30022758 1.04e-01 120 chr2L:7518903-7519023 9.91e-01 120 chr2L:838090-838210 9.93e-01 120 chr3R:14741418-14741538 6.24e-01 120 chrX:3068364-3068484 9.13e-02 120 chr2R:8751590-8751710 9.97e-01 120 chrX:17510672-17510792 9.32e-01 120 chr2L:858257-858377 9.38e-01 120 chr2R:7077046-7077166 9.79e-01 120 chr3R:22041867-22041987 7.91e-03 6_[+5(7.30e-05)]_18_[+1(1.39e-05)]_\ 80 chr2L:3856473-3856593 1.00e+00 120 chr2L:3776166-3776286 9.49e-01 120 chrX:1858954-1859074 3.18e-02 16_[+3(5.17e-06)]_96 chr2L:10426763-10426883 7.35e-01 120 chr2L:3477397-3477517 9.94e-01 120 chr3R:13683819-13683939 1.89e-01 19_[+1(9.04e-05)]_93 chr3R:23156844-23156964 4.50e-01 120 chr3R:16834793-16834913 7.86e-02 120 chr2L:4394072-4394192 3.43e-01 120 chr3L:224216-224336 2.32e-01 120 chr2R:17698911-17699031 9.25e-01 120 chr3L:10845150-10845270 9.53e-01 120 chr2R:11095271-11095391 5.43e-01 120 chr2L:7702569-7702689 8.95e-01 120 chrX:11715334-11715454 9.95e-01 120 chr3R:10648970-10649090 9.75e-01 120 chr3L:4122466-4122586 3.35e-01 69_[+1(7.99e-05)]_43 chr2R:21535517-21535637 9.66e-01 120 chrX:19371730-19371850 9.79e-01 120 chr3L:3875115-3875235 9.50e-01 120 chrX:10067692-10067812 9.34e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n06.farnam.hpc.yale.internal ********************************************************************************