******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Atf-2.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:6545929-6546049 1.0000 120 chrX:1276679-1276799 1.0000 120 chrX:2518023-2518143 1.0000 120 chr3R:11353654-11353774 1.0000 120 chrX:20925086-20925206 1.0000 120 chr2R:24893740-24893860 1.0000 120 chr3R:4974813-4974933 1.0000 120 chr2R:12537627-12537747 1.0000 120 chr3R:15292317-15292437 1.0000 120 chr3R:13885165-13885285 1.0000 120 chr3L:1549514-1549634 1.0000 120 chr3R:16630626-16630746 1.0000 120 chr2R:14783018-14783138 1.0000 120 chr3L:908655-908775 1.0000 120 chr3R:26892826-26892946 1.0000 120 chrX:8273818-8273938 1.0000 120 chrX:3950296-3950416 1.0000 120 chr3R:24598762-24598882 1.0000 120 chr3R:24626330-24626450 1.0000 120 chrX:3394239-3394359 1.0000 120 chr3L:3814643-3814763 1.0000 120 chr3R:25661640-25661760 1.0000 120 chrX:18517568-18517688 1.0000 120 chrX:18837248-18837368 1.0000 120 chr2L:7544553-7544673 1.0000 120 chrX:18516270-18516390 1.0000 120 chr4:482727-482847 1.0000 120 chr3L:4252684-4252804 1.0000 120 chr2R:22384434-22384554 1.0000 120 chr2R:7141835-7141955 1.0000 120 chrX:10363004-10363124 1.0000 120 chr3R:23872840-23872960 1.0000 120 chr3R:26230279-26230399 1.0000 120 chr2R:16097123-16097243 1.0000 120 chrX:13764843-13764963 1.0000 120 chr2L:3776092-3776212 1.0000 120 chr2L:19629438-19629558 1.0000 120 chr3L:15794433-15794553 1.0000 120 chr3L:16760388-16760508 1.0000 120 chr2R:24897703-24897823 1.0000 120 chr2L:838118-838238 1.0000 120 chr3R:30770214-30770334 1.0000 120 chr3R:16769552-16769672 1.0000 120 chr2L:16816096-16816216 1.0000 120 chrX:17499172-17499292 1.0000 120 chr2R:24514968-24515088 1.0000 120 chr2R:18603968-18604088 1.0000 120 chrX:8491910-8492030 1.0000 120 chr2L:8610968-8611088 1.0000 120 chr3R:8197259-8197379 1.0000 120 chr3L:21277142-21277262 1.0000 120 chr2L:15432343-15432463 1.0000 120 chrX:12014789-12014909 1.0000 120 chr2R:21514467-21514587 1.0000 120 chrX:19348934-19349054 1.0000 120 chr2R:15919856-15919976 1.0000 120 chr3R:10648953-10649073 1.0000 120 chr2L:3600982-3601102 1.0000 120 chr2R:22379272-22379392 1.0000 120 chr3R:31060069-31060189 1.0000 120 chr2R:14486977-14487097 1.0000 120 chrX:1279134-1279254 1.0000 120 chr3L:3875151-3875271 1.0000 120 chr3L:7510928-7511048 1.0000 120 chr3L:739655-739775 1.0000 120 chr3R:15666235-15666355 1.0000 120 chr2L:19200436-19200556 1.0000 120 chr3L:12079000-12079120 1.0000 120 chr2R:12742666-12742786 1.0000 120 chr3R:19093398-19093518 1.0000 120 chr3R:14098597-14098717 1.0000 120 chr3L:17651937-17652057 1.0000 120 chrX:6279188-6279308 1.0000 120 chr3L:19190948-19191068 1.0000 120 chr2L:2494638-2494758 1.0000 120 chr3R:16957880-16958000 1.0000 120 chr2R:15835494-15835614 1.0000 120 chr2R:12274387-12274507 1.0000 120 chr2L:7293638-7293758 1.0000 120 chr3R:27826303-27826423 1.0000 120 chr3L:6220345-6220465 1.0000 120 chr2L:9996740-9996860 1.0000 120 chr2L:7339748-7339868 1.0000 120 chr3R:15089448-15089568 1.0000 120 chrX:9082761-9082881 1.0000 120 chr3L:9028198-9028318 1.0000 120 chr2L:7790642-7790762 1.0000 120 chrX:10825432-10825552 1.0000 120 chr3R:18215567-18215687 1.0000 120 chrX:19146526-19146646 1.0000 120 chr2R:14913177-14913297 1.0000 120 chr2R:10045607-10045727 1.0000 120 chr3L:7862561-7862681 1.0000 120 chr3L:11414598-11414718 1.0000 120 chr3R:8980225-8980345 1.0000 120 chr2R:9544890-9545010 1.0000 120 chr3R:23817748-23817868 1.0000 120 chr2R:9553885-9554005 1.0000 120 chr3L:16202622-16202742 1.0000 120 chrX:4581883-4582003 1.0000 120 chr3L:8440902-8441022 1.0000 120 chrX:5689654-5689774 1.0000 120 chr3L:5926071-5926191 1.0000 120 chr3L:4413146-4413266 1.0000 120 chrX:16967552-16967672 1.0000 120 chr2R:23979478-23979598 1.0000 120 chr3L:16149853-16149973 1.0000 120 chr2L:488282-488402 1.0000 120 chr2R:10438915-10439035 1.0000 120 chr2L:2580181-2580301 1.0000 120 chr2L:8084804-8084924 1.0000 120 chr2R:18846595-18846715 1.0000 120 chr2R:14136800-14136920 1.0000 120 chr3R:12712637-12712757 1.0000 120 chr3R:16704339-16704459 1.0000 120 chr3L:13021757-13021877 1.0000 120 chr3R:17231587-17231707 1.0000 120 chr2L:827687-827807 1.0000 120 chr2L:20758293-20758413 1.0000 120 chr2L:17583095-17583215 1.0000 120 chr2L:8229691-8229811 1.0000 120 chrX:16781286-16781406 1.0000 120 chr2L:901444-901564 1.0000 120 chr3L:8395734-8395854 1.0000 120 chr3R:11617566-11617686 1.0000 120 chr3R:10521376-10521496 1.0000 120 chr3L:16544425-16544545 1.0000 120 chr3R:15139488-15139608 1.0000 120 chr2L:21619185-21619305 1.0000 120 chrX:9120911-9121031 1.0000 120 chr3L:3770987-3771107 1.0000 120 chrX:8863531-8863651 1.0000 120 chr2L:11206937-11207057 1.0000 120 chr2L:11338428-11338548 1.0000 120 chr3R:6818756-6818876 1.0000 120 chr3L:18840633-18840753 1.0000 120 chrX:5897151-5897271 1.0000 120 chrX:16782203-16782323 1.0000 120 chr2L:18505640-18505760 1.0000 120 chr2R:17420077-17420197 1.0000 120 chrX:6109997-6110117 1.0000 120 chr3R:29690661-29690781 1.0000 120 chr3R:25168347-25168467 1.0000 120 chr3R:21187280-21187400 1.0000 120 chrX:19887012-19887132 1.0000 120 chr3L:10845230-10845350 1.0000 120 chr3R:26235204-26235324 1.0000 120 chrX:13789077-13789197 1.0000 120 chr3L:10866668-10866788 1.0000 120 chr3R:9055160-9055280 1.0000 120 chr3R:10140406-10140526 1.0000 120 chr2L:7532795-7532915 1.0000 120 chr2R:7636683-7636803 1.0000 120 chr2L:9493364-9493484 1.0000 120 chr3L:5604107-5604227 1.0000 120 chr2R:18351572-18351692 1.0000 120 chr3L:10362827-10362947 1.0000 120 chr3R:4378636-4378756 1.0000 120 chrX:5972140-5972260 1.0000 120 chrX:6663224-6663344 1.0000 120 chr3R:8744386-8744506 1.0000 120 chrX:15738971-15739091 1.0000 120 chrX:13128061-13128181 1.0000 120 chr2L:8361623-8361743 1.0000 120 chrX:3367422-3367542 1.0000 120 chrX:20394171-20394291 1.0000 120 chr3R:23028648-23028768 1.0000 120 chrX:5084954-5085074 1.0000 120 chrX:11154013-11154133 1.0000 120 chr2R:11628138-11628258 1.0000 120 chr2L:3477442-3477562 1.0000 120 chr3L:11429798-11429918 1.0000 120 chr2R:17726784-17726904 1.0000 120 chr3R:7082024-7082144 1.0000 120 chr3R:30304998-30305118 1.0000 120 chr3R:22041780-22041900 1.0000 120 chrX:19770267-19770387 1.0000 120 chr2R:13586442-13586562 1.0000 120 chr3L:11304037-11304157 1.0000 120 chr3R:27273650-27273770 1.0000 120 chr3L:12081723-12081843 1.0000 120 chrX:16103598-16103718 1.0000 120 chr3R:5861588-5861708 1.0000 120 chr3L:1335577-1335697 1.0000 120 chr3L:19294424-19294544 1.0000 120 chrX:11137701-11137821 1.0000 120 chr2L:3861549-3861669 1.0000 120 chr3L:7359942-7360062 1.0000 120 chr3L:10899377-10899497 1.0000 120 chr2R:7815161-7815281 1.0000 120 chr2R:16610032-16610152 1.0000 120 chr3R:5060331-5060451 1.0000 120 chrX:10628919-10629039 1.0000 120 chr3L:12803725-12803845 1.0000 120 chrX:1370168-1370288 1.0000 120 chrX:17738322-17738442 1.0000 120 chr3L:7861091-7861211 1.0000 120 chr4:1181879-1181999 1.0000 120 chr3L:5857067-5857187 1.0000 120 chrX:7945467-7945587 1.0000 120 chr2R:9712289-9712409 1.0000 120 chrX:3690750-3690870 1.0000 120 chrX:6694994-6695114 1.0000 120 chrX:16683915-16684035 1.0000 120 chr3L:745737-745857 1.0000 120 chr2L:7412322-7412442 1.0000 120 chr3L:16061065-16061185 1.0000 120 chr2L:1462171-1462291 1.0000 120 chr2R:23577408-23577528 1.0000 120 chr2R:9277632-9277752 1.0000 120 chrX:16158670-16158790 1.0000 120 chr3R:20989856-20989976 1.0000 120 chr3R:17584188-17584308 1.0000 120 chrX:3068446-3068566 1.0000 120 chr3L:12037885-12038005 1.0000 120 chr3R:30413977-30414097 1.0000 120 chr2L:11950080-11950200 1.0000 120 chr2R:11095283-11095403 1.0000 120 chr3R:9791248-9791368 1.0000 120 chr2R:12772822-12772942 1.0000 120 chr3R:22023256-22023376 1.0000 120 chr3L:16571469-16571589 1.0000 120 chr2R:11275755-11275875 1.0000 120 chr2R:23818403-23818523 1.0000 120 chr3L:1414186-1414306 1.0000 120 chr4:406959-407079 1.0000 120 chr3L:15532675-15532795 1.0000 120 chr3L:6059256-6059376 1.0000 120 chrX:12466654-12466774 1.0000 120 chr2R:20906708-20906828 1.0000 120 chr3R:8819669-8819789 1.0000 120 chr2L:21096597-21096717 1.0000 120 chr2R:13926232-13926352 1.0000 120 chr3R:26937625-26937745 1.0000 120 chr3L:21516868-21516988 1.0000 120 chrX:21117067-21117187 1.0000 120 chrX:16834308-16834428 1.0000 120 chr3L:5987779-5987899 1.0000 120 chr3L:18782150-18782270 1.0000 120 chr3R:16834779-16834899 1.0000 120 chr3L:17497042-17497162 1.0000 120 chr3R:25004919-25005039 1.0000 120 chr3L:6217624-6217744 1.0000 120 chr3R:19165046-19165166 1.0000 120 chr2L:8982641-8982761 1.0000 120 chr3L:16808270-16808390 1.0000 120 chr2L:15751149-15751269 1.0000 120 chr2L:12351074-12351194 1.0000 120 chr2R:13999376-13999496 1.0000 120 chrX:18635415-18635535 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Atf-2/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Atf-2.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.314 C 0.189 G 0.186 T 0.311 Background letter frequencies (from file dataset with add-one prior applied): A 0.314 C 0.189 G 0.186 T 0.311 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF KYGCAGTG MEME-1 width = 8 sites = 32 llr = 282 E-value = 2.9e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif KYGCAGTG MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::2:a::: pos.-specific C :537:::: probability G 7:63:a:a matrix T 35::::a: bits 2.4 * 2.2 * * 1.9 * * 1.7 **** Relative 1.5 ***** Entropy 1.2 * ***** (12.7 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCAGTG consensus TTCG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYGCAGTG MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:9712289-9712409 104 4.18e-06 AAAATCTAGT GCGCAGTG CGCTCATAG chr2R:17726784-17726904 49 4.18e-06 cttttGTGGA GCGCAGTG TGGCCACACT chr2R:9544890-9545010 95 4.18e-06 CCACATTTTT GCGCAGTG CAAAACACAT chr3L:21277142-21277262 58 4.18e-06 TTTTCTAGAC GCGCAGTG GCTGTAAAAC chr2L:21096597-21096717 59 1.10e-05 CCGTCCCACT GTGCAGTG GTGGGTGGCG chrX:13128061-13128181 112 1.10e-05 AGGGGGgtga gtgcagtg c chr2R:12742666-12742786 112 1.10e-05 aatCGGTCAA GTGCAGTG C chr3R:22041780-22041900 47 1.94e-05 CTCTGTTTGT GCGGAGTG GCAACGCTGA chr2R:11628138-11628258 54 1.94e-05 GGCGCGCCAA GCGGAGTG AAAGGCAGGT chr2L:20758293-20758413 12 1.94e-05 AAGCCCGCTA GCGGAGTG TGTTCCATGT chr2L:11950080-11950200 99 2.64e-05 TGCTTATTTT TCGCAGTG TAAGCTATTG chr2L:3861549-3861669 106 2.64e-05 ACCAATTTTT TCGCAGTG CAGTCTC chr3R:24598762-24598882 77 2.64e-05 CGAAACTTTG TCGCAGTG TAGATTGTTC chrX:17738322-17738442 111 4.01e-05 TAGAGTTCGG GTGGAGTG GA chr3L:9028198-9028318 12 4.01e-05 ATTTATTGAT GTGGAGTG GTAAAGAACT chr3R:30770214-30770334 73 4.01e-05 TTTGGAAGGA GTGGAGTG CAGGGCAGAA chrX:21117067-21117187 48 5.13e-05 CTGACAGATG GCCGAGTG CTGCAAGAGC chr3R:26892826-26892946 29 5.13e-05 CATGTGTGTT GCACAGTG CGTTTCAAAA chrX:16781286-16781406 68 6.28e-05 TGGATATTTT TTGCAGTG TACGTAGGTT chr3L:11304037-11304157 62 6.99e-05 GCGACATTTT TCCCAGTG TATGATCTGC chrX:6663224-6663344 5 6.99e-05 TTGG TCCCAGTG CGTTAGTTTT chrX:11137701-11137821 47 9.53e-05 CAAATTGCTT GTACAGTG GAAACACCCA chrX:13789077-13789197 113 9.53e-05 TTTCCATACC GTACAGTG chrX:10825432-10825552 32 9.53e-05 AATGAAAATG GTCGAGTG TCGCGACTAT chr3L:3814643-3814763 11 9.53e-05 TCGGCAACAA GTACAGTG GAACACCGCT chrX:1276679-1276799 7 9.53e-05 CTGAAT GTACAGTG TGTTCTAAAA chr3R:25004919-25005039 93 1.14e-04 CATTTATTTT TTCCAGTG CAGCTGCTAA chr3R:15089448-15089568 65 1.14e-04 AAGCCGTTTC TTCCAGTG CAGAGACCAA chrX:3950296-3950416 29 1.14e-04 AAGCTGCATT TTCCAGTG CATAAACATT chrX:1370168-1370288 81 1.44e-04 ACAACTTCTT TCACAGTG TATTTAACTG chr3R:11353654-11353774 106 1.44e-04 GTCTGAGCTG TCCGAGTG GTATTGG chr2R:13926232-13926352 31 1.90e-04 GCGATATAAA GCGCACTG AAAAAAATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYGCAGTG MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:9712289-9712409 4.2e-06 103_[+1]_9 chr2R:17726784-17726904 4.2e-06 48_[+1]_64 chr2R:9544890-9545010 4.2e-06 94_[+1]_18 chr3L:21277142-21277262 4.2e-06 57_[+1]_55 chr2L:21096597-21096717 1.1e-05 58_[+1]_54 chrX:13128061-13128181 1.1e-05 111_[+1]_1 chr2R:12742666-12742786 1.1e-05 111_[+1]_1 chr3R:22041780-22041900 1.9e-05 46_[+1]_66 chr2R:11628138-11628258 1.9e-05 53_[+1]_59 chr2L:20758293-20758413 1.9e-05 11_[+1]_101 chr2L:11950080-11950200 2.6e-05 98_[+1]_14 chr2L:3861549-3861669 2.6e-05 105_[+1]_7 chr3R:24598762-24598882 2.6e-05 76_[+1]_36 chrX:17738322-17738442 4e-05 110_[+1]_2 chr3L:9028198-9028318 4e-05 11_[+1]_101 chr3R:30770214-30770334 4e-05 72_[+1]_40 chrX:21117067-21117187 5.1e-05 47_[+1]_65 chr3R:26892826-26892946 5.1e-05 28_[+1]_84 chrX:16781286-16781406 6.3e-05 67_[+1]_45 chr3L:11304037-11304157 7e-05 61_[+1]_51 chrX:6663224-6663344 7e-05 4_[+1]_108 chrX:11137701-11137821 9.5e-05 46_[+1]_66 chrX:13789077-13789197 9.5e-05 112_[+1] chrX:10825432-10825552 9.5e-05 31_[+1]_81 chr3L:3814643-3814763 9.5e-05 10_[+1]_102 chrX:1276679-1276799 9.5e-05 6_[+1]_106 chr3R:25004919-25005039 0.00011 92_[+1]_20 chr3R:15089448-15089568 0.00011 64_[+1]_48 chrX:3950296-3950416 0.00011 28_[+1]_84 chrX:1370168-1370288 0.00014 80_[+1]_32 chr3R:11353654-11353774 0.00014 105_[+1]_7 chr2R:13926232-13926352 0.00019 30_[+1]_82 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYGCAGTG MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF KYGCAGTG width=8 seqs=32 chr2R:9712289-9712409 ( 104) GCGCAGTG 1 chr2R:17726784-17726904 ( 49) GCGCAGTG 1 chr2R:9544890-9545010 ( 95) GCGCAGTG 1 chr3L:21277142-21277262 ( 58) GCGCAGTG 1 chr2L:21096597-21096717 ( 59) GTGCAGTG 1 chrX:13128061-13128181 ( 112) GTGCAGTG 1 chr2R:12742666-12742786 ( 112) GTGCAGTG 1 chr3R:22041780-22041900 ( 47) GCGGAGTG 1 chr2R:11628138-11628258 ( 54) GCGGAGTG 1 chr2L:20758293-20758413 ( 12) GCGGAGTG 1 chr2L:11950080-11950200 ( 99) TCGCAGTG 1 chr2L:3861549-3861669 ( 106) TCGCAGTG 1 chr3R:24598762-24598882 ( 77) TCGCAGTG 1 chrX:17738322-17738442 ( 111) GTGGAGTG 1 chr3L:9028198-9028318 ( 12) GTGGAGTG 1 chr3R:30770214-30770334 ( 73) GTGGAGTG 1 chrX:21117067-21117187 ( 48) GCCGAGTG 1 chr3R:26892826-26892946 ( 29) GCACAGTG 1 chrX:16781286-16781406 ( 68) TTGCAGTG 1 chr3L:11304037-11304157 ( 62) TCCCAGTG 1 chrX:6663224-6663344 ( 5) TCCCAGTG 1 chrX:11137701-11137821 ( 47) GTACAGTG 1 chrX:13789077-13789197 ( 113) GTACAGTG 1 chrX:10825432-10825552 ( 32) GTCGAGTG 1 chr3L:3814643-3814763 ( 11) GTACAGTG 1 chrX:1276679-1276799 ( 7) GTACAGTG 1 chr3R:25004919-25005039 ( 93) TTCCAGTG 1 chr3R:15089448-15089568 ( 65) TTCCAGTG 1 chrX:3950296-3950416 ( 29) TTCCAGTG 1 chrX:1370168-1370288 ( 81) TCACAGTG 1 chr3R:11353654-11353774 ( 106) TCCGAGTG 1 chr2R:13926232-13926352 ( 31) GCGCACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYGCAGTG MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.5224 E= 2.9e-001 -1164 -1164 182 14 -1164 149 -1164 59 -74 41 160 -1164 -1164 193 60 -1164 167 -1164 -1164 -1164 -1164 -259 238 -1164 -1164 -1164 -1164 168 -1164 -1164 243 -1164 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYGCAGTG MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 32 E= 2.9e-001 0.000000 0.000000 0.656250 0.343750 0.000000 0.531250 0.000000 0.468750 0.187500 0.250000 0.562500 0.000000 0.000000 0.718750 0.281250 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.031250 0.968750 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif KYGCAGTG MEME-1 regular expression -------------------------------------------------------------------------------- [GT][CT][GC][CG]AGTG -------------------------------------------------------------------------------- Time 7.53 secs. ******************************************************************************** ******************************************************************************** MOTIF CGCCGCMC MEME-2 width = 8 sites = 23 llr = 212 E-value = 6.3e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif CGCCGCMC MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::::1:3: pos.-specific C 9:77:a69 probability G :a319::1 matrix T 1::1:::: bits 2.4 * 2.2 * * 1.9 * * 1.7 ** ** * Relative 1.5 *** ** * Entropy 1.2 *** ** * (13.3 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCGCCC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCMC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:17420077-17420197 82 1.58e-06 GCAACACTGT CGCCGCCC CAATCAAACA chr3R:24598762-24598882 48 1.58e-06 TTCCCCGCCC CGCCGCCC CTTCGCAGCA chrX:20925086-20925206 15 1.58e-06 acagccgaag cgccgccc gaagtggagc chrX:18517568-18517688 47 3.13e-06 ACGTTCCAGA CGGCGCCC TCTGGCGGCG chr3L:19294424-19294544 65 5.75e-06 AACCAAGTTT CGCCGCAC TCCGCATAGG chr3R:16957880-16958000 36 8.33e-06 GTTGCCGATT CGGCGCAC TAAAAGGATA chr2R:10438915-10439035 68 9.88e-06 TGATACAGTG CGCGGCCC ATTGCACAGA chr3R:16704339-16704459 31 1.40e-05 CTCTAAATAC CGCTGCCC AGGCACTTAG chrX:8491910-8492030 105 1.40e-05 GACCCGCATG CGCCGCCG GCCCATAT chrX:17499172-17499292 19 1.93e-05 ATTAAACTTT CGCCACCC AATATTTACG chr3L:10899377-10899497 3 3.27e-05 AG TGGCGCCC TCTTTTGTTT chr3R:27273650-27273770 24 3.27e-05 TACTGGAAAA CGCCGCTC ATACTAAACA chr2R:18351572-18351692 56 3.27e-05 CGCTGGCAGG CGGCACCC TCTACCCGCC chr2R:12274387-12274507 22 3.27e-05 TGCCGAAAGA TGGCGCCC ATGGCGCACT chr3R:20989856-20989976 107 3.52e-05 atcttgtagt cgcggcac tcgagc chrX:17738322-17738442 35 4.47e-05 CGAAAAGTAT CGCCGCAG CCATAACATC chr2R:17726784-17726904 98 4.47e-05 TGTTGGCTAG CGCTGCAC TGGCCAATCG chrX:6279188-6279308 90 4.47e-05 TGATTCGTTT CGCAGCCC CACGCTGGTA chr2R:11628138-11628258 81 5.61e-05 TAACGAAAAC CGCCGCCA GGGGCGCTGC chrX:6109997-6110117 110 5.61e-05 CGCCAGGTGG CGCCACAC ATG chrX:19887012-19887132 20 5.87e-05 TGGCACTGAC CGCCGACC AATCAGAGAG chrX:16782203-16782323 104 7.32e-05 TTTATTTGGT CGGTGCAC TTTTCACTG chr3L:739655-739775 23 8.43e-05 CCTTGCTATA TGGCGCAC ATGTGCTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCMC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:17420077-17420197 1.6e-06 81_[+2]_31 chr3R:24598762-24598882 1.6e-06 47_[+2]_65 chrX:20925086-20925206 1.6e-06 14_[+2]_98 chrX:18517568-18517688 3.1e-06 46_[+2]_66 chr3L:19294424-19294544 5.7e-06 64_[+2]_48 chr3R:16957880-16958000 8.3e-06 35_[+2]_77 chr2R:10438915-10439035 9.9e-06 67_[+2]_45 chr3R:16704339-16704459 1.4e-05 30_[+2]_82 chrX:8491910-8492030 1.4e-05 104_[+2]_8 chrX:17499172-17499292 1.9e-05 18_[+2]_94 chr3L:10899377-10899497 3.3e-05 2_[+2]_110 chr3R:27273650-27273770 3.3e-05 23_[+2]_89 chr2R:18351572-18351692 3.3e-05 55_[+2]_57 chr2R:12274387-12274507 3.3e-05 21_[+2]_91 chr3R:20989856-20989976 3.5e-05 106_[+2]_6 chrX:17738322-17738442 4.5e-05 34_[+2]_78 chr2R:17726784-17726904 4.5e-05 97_[+2]_15 chrX:6279188-6279308 4.5e-05 89_[+2]_23 chr2R:11628138-11628258 5.6e-05 80_[+2]_32 chrX:6109997-6110117 5.6e-05 109_[+2]_3 chrX:19887012-19887132 5.9e-05 19_[+2]_93 chrX:16782203-16782323 7.3e-05 103_[+2]_9 chr3L:739655-739775 8.4e-05 22_[+2]_90 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCMC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CGCCGCMC width=8 seqs=23 chr2R:17420077-17420197 ( 82) CGCCGCCC 1 chr3R:24598762-24598882 ( 48) CGCCGCCC 1 chrX:20925086-20925206 ( 15) CGCCGCCC 1 chrX:18517568-18517688 ( 47) CGGCGCCC 1 chr3L:19294424-19294544 ( 65) CGCCGCAC 1 chr3R:16957880-16958000 ( 36) CGGCGCAC 1 chr2R:10438915-10439035 ( 68) CGCGGCCC 1 chr3R:16704339-16704459 ( 31) CGCTGCCC 1 chrX:8491910-8492030 ( 105) CGCCGCCG 1 chrX:17499172-17499292 ( 19) CGCCACCC 1 chr3L:10899377-10899497 ( 3) TGGCGCCC 1 chr3R:27273650-27273770 ( 24) CGCCGCTC 1 chr2R:18351572-18351692 ( 56) CGGCACCC 1 chr2R:12274387-12274507 ( 22) TGGCGCCC 1 chr3R:20989856-20989976 ( 107) CGCGGCAC 1 chrX:17738322-17738442 ( 35) CGCCGCAG 1 chr2R:17726784-17726904 ( 98) CGCTGCAC 1 chrX:6279188-6279308 ( 90) CGCAGCCC 1 chr2R:11628138-11628258 ( 81) CGCCGCCA 1 chrX:6109997-6110117 ( 110) CGCCACAC 1 chrX:19887012-19887132 ( 20) CGCCGACC 1 chrX:16782203-16782323 ( 104) CGGTGCAC 1 chr3L:739655-739775 ( 23) TGGCGCAC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCMC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 6.3e+001 -1117 220 -1117 -125 -1117 -1117 243 -1117 -1117 188 71 -1117 -285 197 -110 -125 -127 -1117 222 -1117 -285 234 -1117 -1117 15 169 -1117 -284 -285 220 -110 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCMC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 6.3e+001 0.000000 0.869565 0.000000 0.130435 0.000000 0.000000 1.000000 0.000000 0.000000 0.695652 0.304348 0.000000 0.043478 0.739130 0.086957 0.130435 0.130435 0.000000 0.869565 0.000000 0.043478 0.956522 0.000000 0.000000 0.347826 0.608696 0.000000 0.043478 0.043478 0.869565 0.086957 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CGCCGCMC MEME-2 regular expression -------------------------------------------------------------------------------- CG[CG]CGC[CA]C -------------------------------------------------------------------------------- Time 13.80 secs. ******************************************************************************** ******************************************************************************** MOTIF CCACASTG MEME-3 width = 8 sites = 17 llr = 166 E-value = 1.1e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCACASTG MEME-3 Description -------------------------------------------------------------------------------- Simplified A ::7:a::: pos.-specific C a92a:62: probability G :11::4:a matrix T ::::::8: bits 2.4 * * * 2.2 * * * 1.9 ** * * 1.7 ** ** * Relative 1.5 ** *** * Entropy 1.2 ** *** * (14.1 bits) 1.0 ** ***** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCACACTG consensus GC sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACASTG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20758293-20758413 103 7.28e-06 GTAAGGAGTA CCACACTG CAAGAAAAAG chr2L:2580181-2580301 103 7.28e-06 TGAGGTTCGG CCACACTG CCACTCATCT chr3R:14098597-14098717 95 7.28e-06 GATTAATTTC CCACACTG CAGTCAACGC chr3L:7510928-7511048 92 7.28e-06 GGCAACACTG CCACACTG TCAAATTCCA chr2R:21514467-21514587 10 7.28e-06 GAACAATAA CCACACTG AGAAAAATGG chr3R:7082024-7082144 95 1.44e-05 CAGAAGTGGC CCACAGTG CCCGCGAGTT chrX:5897151-5897271 27 1.44e-05 GTTTTAATGG CCACAGTG GAGGCCAGAA chrX:8491910-8492030 71 1.44e-05 GTAGCGGTGC CCACAGTG GCGGCGAGAA chr3L:3770987-3771107 48 1.89e-05 TTGCATCTTC CCACACCG AGCAGTTAAT chrX:12014789-12014909 101 2.32e-05 AACGCTCTTG CCCCACTG TGCCCTCTAC chrX:6545929-6546049 45 2.32e-05 GCTCGATTTG CCCCACTG TGCGGCTGGG chr3L:1335577-1335697 100 3.19e-05 TCTGTCGAGC CCGCACTG TACTTGTTTT chrX:11154013-11154133 21 3.19e-05 AGTAGCTTTG CCACAGCG CCATCTGCTG chr2L:11338428-11338548 82 3.62e-05 AGAATTTTTC CCCCAGTG CTGACCATCC chr3R:30770214-30770334 21 5.29e-05 GGCAAAGGTG CGACACTG AAAGAAACCG chr2L:21619185-21619305 62 5.81e-05 gaaagcgatt ccgcagcg aaaatttgtt chrX:2518023-2518143 52 6.95e-05 CCGAAGATGA CGACACCG GGCGCACCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACASTG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20758293-20758413 7.3e-06 102_[+3]_10 chr2L:2580181-2580301 7.3e-06 102_[+3]_10 chr3R:14098597-14098717 7.3e-06 94_[+3]_18 chr3L:7510928-7511048 7.3e-06 91_[+3]_21 chr2R:21514467-21514587 7.3e-06 9_[+3]_103 chr3R:7082024-7082144 1.4e-05 94_[+3]_18 chrX:5897151-5897271 1.4e-05 26_[+3]_86 chrX:8491910-8492030 1.4e-05 70_[+3]_42 chr3L:3770987-3771107 1.9e-05 47_[+3]_65 chrX:12014789-12014909 2.3e-05 100_[+3]_12 chrX:6545929-6546049 2.3e-05 44_[+3]_68 chr3L:1335577-1335697 3.2e-05 99_[+3]_13 chrX:11154013-11154133 3.2e-05 20_[+3]_92 chr2L:11338428-11338548 3.6e-05 81_[+3]_31 chr3R:30770214-30770334 5.3e-05 20_[+3]_92 chr2L:21619185-21619305 5.8e-05 61_[+3]_51 chrX:2518023-2518143 7e-05 51_[+3]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACASTG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCACASTG width=8 seqs=17 chr2L:20758293-20758413 ( 103) CCACACTG 1 chr2L:2580181-2580301 ( 103) CCACACTG 1 chr3R:14098597-14098717 ( 95) CCACACTG 1 chr3L:7510928-7511048 ( 92) CCACACTG 1 chr2R:21514467-21514587 ( 10) CCACACTG 1 chr3R:7082024-7082144 ( 95) CCACAGTG 1 chrX:5897151-5897271 ( 27) CCACAGTG 1 chrX:8491910-8492030 ( 71) CCACAGTG 1 chr3L:3770987-3771107 ( 48) CCACACCG 1 chrX:12014789-12014909 ( 101) CCCCACTG 1 chrX:6545929-6546049 ( 45) CCCCACTG 1 chr3L:1335577-1335697 ( 100) CCGCACTG 1 chrX:11154013-11154133 ( 21) CCACAGCG 1 chr2L:11338428-11338548 ( 82) CCCCAGTG 1 chr3R:30770214-30770334 ( 21) CGACACTG 1 chr2L:21619185-21619305 ( 62) CCGCAGCG 1 chrX:2518023-2518143 ( 52) CGACACCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACASTG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7672 E= 1.1e+003 -1073 240 -1073 -1073 -1073 222 -66 -1073 117 -10 -66 -1073 -1073 240 -1073 -1073 167 -1073 -1073 -1073 -1073 178 92 -1073 -1073 32 -1073 130 -1073 -1073 243 -1073 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACASTG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 1.1e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.882353 0.117647 0.000000 0.705882 0.176471 0.117647 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.647059 0.352941 0.000000 0.000000 0.235294 0.000000 0.764706 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCACASTG MEME-3 regular expression -------------------------------------------------------------------------------- CCACA[CG][TC]G -------------------------------------------------------------------------------- Time 20.00 secs. ******************************************************************************** ******************************************************************************** MOTIF RGSGCGCC MEME-4 width = 8 sites = 6 llr = 69 E-value = 2.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif RGSGCGCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A 3::::::: pos.-specific C ::72a:aa probability G 7a38:a:: matrix T :::::::: bits 2.4 * **** 2.2 * **** 1.9 * **** 1.7 * ***** Relative 1.5 ******* Entropy 1.2 ******** (16.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGCGCC consensus A G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSGCGCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:11628138-11628258 44 1.53e-06 AAATTTTGAA GGCGCGCC AAGCGGAGTG chr2R:14486977-14487097 109 1.53e-06 GAGAATATAA GGCGCGCC TGCA chrX:16967552-16967672 81 3.03e-06 CACTCGGCAG GGGGCGCC ACAACGACGT chr2R:12274387-12274507 46 5.61e-06 CACTAAGGTC AGCGCGCC ACCTGGCGAC chr3L:739655-739775 51 7.16e-06 CATGATGATA GGCCCGCC AAGTATCTTC chr4:406959-407079 77 9.70e-06 TTTCCCACAG AGGGCGCC TGTAGTGGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSGCGCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:11628138-11628258 1.5e-06 43_[+4]_69 chr2R:14486977-14487097 1.5e-06 108_[+4]_4 chrX:16967552-16967672 3e-06 80_[+4]_32 chr2R:12274387-12274507 5.6e-06 45_[+4]_67 chr3L:739655-739775 7.2e-06 50_[+4]_62 chr4:406959-407079 9.7e-06 76_[+4]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSGCGCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF RGSGCGCC width=8 seqs=6 chr2R:11628138-11628258 ( 44) GGCGCGCC 1 chr2R:14486977-14487097 ( 109) GGCGCGCC 1 chrX:16967552-16967672 ( 81) GGGGCGCC 1 chr2R:12274387-12274507 ( 46) AGCGCGCC 1 chr3L:739655-739775 ( 51) GGCCCGCC 1 chr4:406959-407079 ( 77) AGGGCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSGCGCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.3004 E= 2.1e+004 9 -923 184 -923 -923 -923 242 -923 -923 182 84 -923 -923 -18 216 -923 -923 240 -923 -923 -923 -923 242 -923 -923 240 -923 -923 -923 240 -923 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSGCGCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.1e+004 0.333333 0.000000 0.666667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.666667 0.333333 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif RGSGCGCC MEME-4 regular expression -------------------------------------------------------------------------------- [GA]G[CG]GCGCC -------------------------------------------------------------------------------- Time 26.25 secs. ******************************************************************************** ******************************************************************************** MOTIF TGGGCGGC MEME-5 width = 8 sites = 2 llr = 26 E-value = 2.0e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGGGCGGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C ::::a::a probability G :aaa:aa: matrix T a::::::: bits 2.4 ******* 2.2 ******* 1.9 ******* 1.7 ******** Relative 1.5 ******** Entropy 1.2 ******** (18.6 bits) 1.0 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TGGGCGGC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCGGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7636683-7636803 39 2.47e-06 TTGGGCGATT TGGGCGGC AAAACGCCTG chr3L:18840633-18840753 14 2.47e-06 AGAACGTTTT TGGGCGGC TAGTGGTGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCGGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7636683-7636803 2.5e-06 38_[+5]_74 chr3L:18840633-18840753 2.5e-06 13_[+5]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCGGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGGGCGGC width=8 seqs=2 chr2R:7636683-7636803 ( 39) TGGGCGGC 1 chr3L:18840633-18840753 ( 14) TGGGCGGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCGGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 2.0e+004 -765 -765 -765 168 -765 -765 242 -765 -765 -765 242 -765 -765 -765 242 -765 -765 240 -765 -765 -765 -765 242 -765 -765 -765 242 -765 -765 240 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCGGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+004 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGGGCGGC MEME-5 regular expression -------------------------------------------------------------------------------- TGGGCGGC -------------------------------------------------------------------------------- Time 32.41 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:6545929-6546049 2.83e-04 44_[+3(2.32e-05)]_6_[+5(8.33e-05)]_\ 54 chrX:1276679-1276799 1.10e-03 6_[+1(9.53e-05)]_106 chrX:2518023-2518143 1.39e-03 51_[+3(6.95e-05)]_[+4(6.37e-05)]_53 chr3R:11353654-11353774 2.71e-01 120 chrX:20925086-20925206 8.07e-06 14_[+2(1.58e-06)]_76_[+3(9.34e-05)]_\ 14 chr2R:24893740-24893860 7.20e-01 120 chr3R:4974813-4974933 1.08e-01 120 chr2R:12537627-12537747 9.56e-01 120 chr3R:15292317-15292437 3.97e-01 120 chr3R:13885165-13885285 8.71e-01 120 chr3L:1549514-1549634 7.82e-01 120 chr3R:16630626-16630746 2.66e-01 120 chr2R:14783018-14783138 7.12e-02 120 chr3L:908655-908775 2.50e-01 120 chr3R:26892826-26892946 1.92e-02 28_[+1(5.13e-05)]_84 chrX:8273818-8273938 2.77e-03 120 chrX:3950296-3950416 1.49e-01 120 chr3R:24598762-24598882 7.03e-06 47_[+2(1.58e-06)]_21_[+1(2.64e-05)]_\ 36 chr3R:24626330-24626450 9.76e-01 120 chrX:3394239-3394359 1.00e+00 120 chr3L:3814643-3814763 7.49e-02 10_[+1(9.53e-05)]_102 chr3R:25661640-25661760 9.92e-01 120 chrX:18517568-18517688 4.36e-06 [+3(8.66e-05)]_38_[+2(3.13e-06)]_66 chrX:18837248-18837368 7.54e-02 120 chr2L:7544553-7544673 9.05e-01 120 chrX:18516270-18516390 8.90e-01 120 chr4:482727-482847 4.56e-01 120 chr3L:4252684-4252804 7.20e-01 120 chr2R:22384434-22384554 6.65e-01 120 chr2R:7141835-7141955 9.93e-01 120 chrX:10363004-10363124 9.83e-01 120 chr3R:23872840-23872960 8.72e-02 120 chr3R:26230279-26230399 9.98e-02 120 chr2R:16097123-16097243 7.70e-01 120 chrX:13764843-13764963 6.86e-01 120 chr2L:3776092-3776212 9.85e-01 120 chr2L:19629438-19629558 9.52e-01 120 chr3L:15794433-15794553 1.00e+00 120 chr3L:16760388-16760508 8.10e-01 120 chr2R:24897703-24897823 9.70e-01 120 chr2L:838118-838238 9.20e-01 120 chr3R:30770214-30770334 2.20e-04 20_[+3(5.29e-05)]_44_[+1(4.01e-05)]_\ 40 chr3R:16769552-16769672 1.00e+00 120 chr2L:16816096-16816216 3.42e-02 120 chrX:17499172-17499292 1.05e-01 18_[+2(1.93e-05)]_94 chr2R:24514968-24515088 2.83e-01 120 chr2R:18603968-18604088 9.08e-01 120 chrX:8491910-8492030 4.04e-06 70_[+3(1.44e-05)]_26_[+2(1.40e-05)]_\ 8 chr2L:8610968-8611088 8.43e-01 120 chr3R:8197259-8197379 8.99e-01 120 chr3L:21277142-21277262 5.07e-04 57_[+1(4.18e-06)]_55 chr2L:15432343-15432463 5.27e-01 120 chrX:12014789-12014909 2.48e-02 100_[+3(2.32e-05)]_12 chr2R:21514467-21514587 6.23e-02 9_[+3(7.28e-06)]_103 chrX:19348934-19349054 4.85e-01 120 chr2R:15919856-15919976 8.87e-01 120 chr3R:10648953-10649073 8.71e-01 120 chr2L:3600982-3601102 8.68e-01 120 chr2R:22379272-22379392 4.84e-01 120 chr3R:31060069-31060189 3.58e-02 120 chr2R:14486977-14487097 9.70e-03 108_[+4(1.53e-06)]_4 chrX:1279134-1279254 7.57e-02 120 chr3L:3875151-3875271 9.93e-01 120 chr3L:7510928-7511048 1.69e-03 91_[+3(7.28e-06)]_21 chr3L:739655-739775 4.09e-04 22_[+2(8.43e-05)]_20_[+4(7.16e-06)]_\ 62 chr3R:15666235-15666355 9.52e-01 120 chr2L:19200436-19200556 2.61e-02 120 chr3L:12079000-12079120 1.16e-01 120 chr2R:12742666-12742786 5.21e-02 111_[+1(1.10e-05)]_1 chr3R:19093398-19093518 9.97e-01 120 chr3R:14098597-14098717 4.27e-03 94_[+3(7.28e-06)]_18 chr3L:17651937-17652057 8.95e-01 120 chrX:6279188-6279308 2.36e-03 89_[+2(4.47e-05)]_23 chr3L:19190948-19191068 1.65e-01 120 chr2L:2494638-2494758 6.97e-01 120 chr3R:16957880-16958000 4.51e-03 35_[+2(8.33e-06)]_77 chr2R:15835494-15835614 7.53e-01 120 chr2R:12274387-12274507 2.21e-05 21_[+2(3.27e-05)]_1_[+2(8.43e-05)]_\ 7_[+4(5.61e-06)]_67 chr2L:7293638-7293758 6.81e-01 120 chr3R:27826303-27826423 9.14e-01 120 chr3L:6220345-6220465 2.68e-01 120 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chr2R:23818403-23818523 6.13e-02 120 chr3L:1414186-1414306 2.62e-01 120 chr4:406959-407079 5.45e-04 76_[+4(9.70e-06)]_36 chr3L:15532675-15532795 1.11e-01 120 chr3L:6059256-6059376 8.09e-01 120 chrX:12466654-12466774 6.14e-01 120 chr2R:20906708-20906828 3.95e-03 50_[+3(8.66e-05)]_62 chr3R:8819669-8819789 4.79e-01 120 chr2L:21096597-21096717 1.82e-04 58_[+1(1.10e-05)]_1_[+5(8.33e-05)]_\ 45 chr2R:13926232-13926352 9.77e-02 120 chr3R:26937625-26937745 3.30e-01 120 chr3L:21516868-21516988 8.65e-01 120 chrX:21117067-21117187 4.73e-02 47_[+1(5.13e-05)]_65 chrX:16834308-16834428 6.49e-01 120 chr3L:5987779-5987899 8.57e-01 120 chr3L:18782150-18782270 1.00e+00 120 chr3R:16834779-16834899 2.62e-02 120 chr3L:17497042-17497162 8.20e-01 120 chr3R:25004919-25005039 2.10e-02 120 chr3L:6217624-6217744 3.18e-01 120 chr3R:19165046-19165166 9.19e-01 120 chr2L:8982641-8982761 9.95e-01 120 chr3L:16808270-16808390 3.15e-01 120 chr2L:15751149-15751269 2.50e-01 120 chr2L:12351074-12351194 6.94e-01 120 chr2R:13999376-13999496 6.53e-01 120 chrX:18635415-18635535 2.25e-01 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n10.farnam.hpc.yale.internal ********************************************************************************