******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Asciz.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chrX:4686854-4686974 1.0000 120 chr3L:2493907-2494027 1.0000 120 chr2L:21091112-21091232 1.0000 120 chr2L:5338762-5338882 1.0000 120 chr3L:16429572-16429692 1.0000 120 chr3L:16431182-16431302 1.0000 120 chr3R:15926063-15926183 1.0000 120 chr2L:7495109-7495229 1.0000 120 chr3L:3755807-3755927 1.0000 120 chr2L:12049233-12049353 1.0000 120 chr2L:14307688-14307808 1.0000 120 chr3L:16486602-16486722 1.0000 120 chr2R:11946961-11947081 1.0000 120 chrX:8128285-8128405 1.0000 120 chr3R:14436544-14436664 1.0000 120 chr2L:470018-470138 1.0000 120 chr2L:19998328-19998448 1.0000 120 chr3L:5785362-5785482 1.0000 120 chrX:13645186-13645306 1.0000 120 chr3R:19467655-19467775 1.0000 120 chr2R:22666776-22666896 1.0000 120 chr3R:23181115-23181235 1.0000 120 chr2R:13532008-13532128 1.0000 120 chr3R:9550395-9550515 1.0000 120 chr2L:10497530-10497650 1.0000 120 chr2L:8285338-8285458 1.0000 120 chr3R:18785942-18786062 1.0000 120 chr3L:815368-815488 1.0000 120 chr3L:137056-137176 1.0000 120 chr2L:16532044-16532164 1.0000 120 chr3R:19182994-19183114 1.0000 120 chrX:16089741-16089861 1.0000 120 chr3R:19060387-19060507 1.0000 120 chr3L:17656764-17656884 1.0000 120 chr3R:22635039-22635159 1.0000 120 chr2L:9505837-9505957 1.0000 120 chr3R:14002228-14002348 1.0000 120 chr2L:21971128-21971248 1.0000 120 chr3R:14526794-14526914 1.0000 120 chr3R:9892710-9892830 1.0000 120 chr2R:18148522-18148642 1.0000 120 chr3R:21271370-21271490 1.0000 120 chr3R:6401060-6401180 1.0000 120 chr3L:15495095-15495215 1.0000 120 chr2L:1913181-1913301 1.0000 120 chr3L:14673569-14673689 1.0000 120 chrX:15893965-15894085 1.0000 120 chr2R:17078066-17078186 1.0000 120 chr3L:15597171-15597291 1.0000 120 chr3R:28674818-28674938 1.0000 120 chr2R:22542846-22542966 1.0000 120 chr2R:7756389-7756509 1.0000 120 chrX:19847731-19847851 1.0000 120 chr3L:4311438-4311558 1.0000 120 chr3L:20915264-20915384 1.0000 120 chr3L:10741315-10741435 1.0000 120 chr3L:4220787-4220907 1.0000 120 chrX:15495741-15495861 1.0000 120 chr2L:7158931-7159051 1.0000 120 chr2R:23740377-23740497 1.0000 120 chr3R:13820550-13820670 1.0000 120 chrX:11841806-11841926 1.0000 120 chr3L:483960-484080 1.0000 120 chr2L:12530098-12530218 1.0000 120 chr2R:16845407-16845527 1.0000 120 chr3R:22573748-22573868 1.0000 120 chr2L:18496943-18497063 1.0000 120 chr2L:9614173-9614293 1.0000 120 chr3R:26539258-26539378 1.0000 120 chr3R:5059487-5059607 1.0000 120 chr3L:18795555-18795675 1.0000 120 chr2R:11232613-11232733 1.0000 120 chr2R:11062384-11062504 1.0000 120 chr2L:10276603-10276723 1.0000 120 chr3L:14354663-14354783 1.0000 120 chr2L:3506852-3506972 1.0000 120 chr3R:20950324-20950444 1.0000 120 chr2R:14485389-14485509 1.0000 120 chr2R:10212472-10212592 1.0000 120 chr2R:6156177-6156297 1.0000 120 chr3L:8041785-8041905 1.0000 120 chr3L:16010340-16010460 1.0000 120 chr2R:16138082-16138202 1.0000 120 chr2R:19683238-19683358 1.0000 120 chr2L:7215824-7215944 1.0000 120 chr2L:20016572-20016692 1.0000 120 chr3L:17808947-17809067 1.0000 120 chr2R:18664376-18664496 1.0000 120 chrX:4457978-4458098 1.0000 120 chr3R:14116211-14116331 1.0000 120 chr2R:18877792-18877912 1.0000 120 chr3L:12045591-12045711 1.0000 120 chr2L:12509596-12509716 1.0000 120 chr2R:6464946-6465066 1.0000 120 chr3L:17896110-17896230 1.0000 120 chr3R:21825253-21825373 1.0000 120 chr2R:16159281-16159401 1.0000 120 chr3L:2004973-2005093 1.0000 120 chr3L:2433452-2433572 1.0000 120 chr2L:6291862-6291982 1.0000 120 chrX:11848722-11848842 1.0000 120 chr2L:18717484-18717604 1.0000 120 chr3L:4534091-4534211 1.0000 120 chr2R:12729337-12729457 1.0000 120 chr3L:2734454-2734574 1.0000 120 chr3L:4615205-4615325 1.0000 120 chr3L:11484609-11484729 1.0000 120 chrX:10115659-10115779 1.0000 120 chr2R:6220024-6220144 1.0000 120 chr2L:17388180-17388300 1.0000 120 chr2R:14031237-14031357 1.0000 120 chr2R:14915046-14915166 1.0000 120 chr3L:1083464-1083584 1.0000 120 chr2R:17272612-17272732 1.0000 120 chr3R:8964116-8964236 1.0000 120 chr2R:21648167-21648287 1.0000 120 chrX:13108534-13108654 1.0000 120 chr2R:24897695-24897815 1.0000 120 chr3L:517358-517478 1.0000 120 chr3L:7996515-7996635 1.0000 120 chr2R:9266560-9266680 1.0000 120 chr2L:19370222-19370342 1.0000 120 chrX:13820579-13820699 1.0000 120 chr3R:10186209-10186329 1.0000 120 chr3R:15677749-15677869 1.0000 120 chr2L:3397758-3397878 1.0000 120 chr2R:9269523-9269643 1.0000 120 chrX:12889258-12889378 1.0000 120 chr3L:14274809-14274929 1.0000 120 chr3R:14598121-14598241 1.0000 120 chr2L:3228857-3228977 1.0000 120 chr2L:12498678-12498798 1.0000 120 chr3L:1169734-1169854 1.0000 120 chr3L:8925811-8925931 1.0000 120 chr3R:9048819-9048939 1.0000 120 chrX:17694928-17695048 1.0000 120 chr3L:19073275-19073395 1.0000 120 chrX:2653577-2653697 1.0000 120 chr3L:4720626-4720746 1.0000 120 chr2L:7966167-7966287 1.0000 120 chr3L:15591356-15591476 1.0000 120 chr2L:5547496-5547616 1.0000 120 chr3L:11273608-11273728 1.0000 120 chr3L:19092202-19092322 1.0000 120 chr2R:17274144-17274264 1.0000 120 chr2L:8938132-8938252 1.0000 120 chr3R:14744526-14744646 1.0000 120 chr2R:24745983-24746103 1.0000 120 chr2L:2906272-2906392 1.0000 120 chr3L:6807693-6807813 1.0000 120 chr3R:24206175-24206295 1.0000 120 chr2R:13305662-13305782 1.0000 120 chr2R:10485620-10485740 1.0000 120 chr3L:3078938-3079058 1.0000 120 chr3R:23947146-23947266 1.0000 120 chr2L:20808365-20808485 1.0000 120 chr3L:16640659-16640779 1.0000 120 chr2L:425606-425726 1.0000 120 chr3L:9695729-9695849 1.0000 120 chr3R:11338427-11338547 1.0000 120 chrX:18238040-18238160 1.0000 120 chr3L:14411067-14411187 1.0000 120 chr3R:31608305-31608425 1.0000 120 chr2R:19138014-19138134 1.0000 120 chrX:6868493-6868613 1.0000 120 chr2L:9497376-9497496 1.0000 120 chrX:5989464-5989584 1.0000 120 chr2L:16523262-16523382 1.0000 120 chrX:11846456-11846576 1.0000 120 chr2R:7167912-7168032 1.0000 120 chr3R:14300082-14300202 1.0000 120 chr2L:14235145-14235265 1.0000 120 chr3L:21060613-21060733 1.0000 120 chr3L:16056357-16056477 1.0000 120 chr2R:14487726-14487846 1.0000 120 chr3R:26908885-26909005 1.0000 120 chr3R:15983671-15983791 1.0000 120 chr2L:16548413-16548533 1.0000 120 chr3L:17532279-17532399 1.0000 120 chr3L:11491954-11492074 1.0000 120 chr2R:9060148-9060268 1.0000 120 chr3L:8029518-8029638 1.0000 120 chr3L:11580053-11580173 1.0000 120 chr3L:17113352-17113472 1.0000 120 chr3L:19056922-19057042 1.0000 120 chr2L:1646682-1646802 1.0000 120 chr3L:8835018-8835138 1.0000 120 chrX:7095076-7095196 1.0000 120 chr3L:16054248-16054368 1.0000 120 chr3R:10521309-10521429 1.0000 120 chr2R:7048853-7048973 1.0000 120 chr2R:22539998-22540118 1.0000 120 chr2R:17533763-17533883 1.0000 120 chr2L:7525376-7525496 1.0000 120 chr3R:28327313-28327433 1.0000 120 chr2L:5113537-5113657 1.0000 120 chr2L:7994708-7994828 1.0000 120 chr3L:17310666-17310786 1.0000 120 chr2L:12463149-12463269 1.0000 120 chr3R:29480048-29480168 1.0000 120 chr2R:8734627-8734747 1.0000 120 chr3R:24293292-24293412 1.0000 120 chr2R:13470257-13470377 1.0000 120 chr3R:9083552-9083672 1.0000 120 chr3L:20494043-20494163 1.0000 120 chr2R:14906337-14906457 1.0000 120 chr3L:1738085-1738205 1.0000 120 chrX:3024666-3024786 1.0000 120 chr2L:9775370-9775490 1.0000 120 chr2R:22158060-22158180 1.0000 120 chrX:14634838-14634958 1.0000 120 chr3L:19191965-19192085 1.0000 120 chr2R:22387693-22387813 1.0000 120 chr3L:14622546-14622666 1.0000 120 chr3R:7779757-7779877 1.0000 120 chrX:11823182-11823302 1.0000 120 chr2R:13996674-13996794 1.0000 120 chr2L:21037855-21037975 1.0000 120 chr3L:11351509-11351629 1.0000 120 chr3L:3788945-3789065 1.0000 120 chr2R:9444508-9444628 1.0000 120 chr3R:4975312-4975432 1.0000 120 chr2L:868410-868530 1.0000 120 chr4:446114-446234 1.0000 120 chr3L:8066132-8066252 1.0000 120 chr2L:1916590-1916710 1.0000 120 chr2R:24293589-24293709 1.0000 120 chr3L:11285262-11285382 1.0000 120 chr2R:7885870-7885990 1.0000 120 chr3L:4380488-4380608 1.0000 120 chr2R:16610101-16610221 1.0000 120 chr2R:14216993-14217113 1.0000 120 chr2R:14109823-14109943 1.0000 120 chr2L:7566774-7566894 1.0000 120 chr3L:15530829-15530949 1.0000 120 chr3L:18272376-18272496 1.0000 120 chr2L:22144316-22144436 1.0000 120 chrX:12947804-12947924 1.0000 120 chrX:13226651-13226771 1.0000 120 chrX:4936607-4936727 1.0000 120 chr3L:20406426-20406546 1.0000 120 chr3R:21420002-21420122 1.0000 120 chr3R:20259524-20259644 1.0000 120 chr2R:6788320-6788440 1.0000 120 chr2R:19413318-19413438 1.0000 120 chr2L:4916003-4916123 1.0000 120 chr3L:12668131-12668251 1.0000 120 chr3R:16069431-16069551 1.0000 120 chrX:17293607-17293727 1.0000 120 chr2L:19884626-19884746 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Asciz/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Asciz.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.322 C 0.174 G 0.18 T 0.324 Background letter frequencies (from file dataset with add-one prior applied): A 0.322 C 0.174 G 0.18 T 0.324 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF GYAAAYAA MEME-1 width = 8 sites = 113 llr = 796 E-value = 5.0e-018 ******************************************************************************** -------------------------------------------------------------------------------- Motif GYAAAYAA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 3:aaa:a6 pos.-specific C :5:::6:2 probability G 7::::::: matrix T :5:::4:2 bits 2.5 2.3 2.0 1.8 Relative 1.5 * *** * Entropy 1.3 * *** * (10.2 bits) 1.0 * ***** 0.8 ******* 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAAACAA consensus AT T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:22387693-22387813 81 1.89e-05 TCTACATCTA GCAAACAA CAATATTTGT chr2L:9497376-9497496 32 1.89e-05 aagacagaga gCAAACAA CAACTTTTAA chr3L:17896110-17896230 36 1.89e-05 AATGCGTTGA GCAAACAA AATATGATCC chr3L:483960-484080 86 1.89e-05 GTCAATAAGT GCAAACAA GGCGAGGCGT chr2L:7158931-7159051 29 1.89e-05 AAGCTCCAAG GCAAACAA GTTTCGTTTT chr3L:20915264-20915384 50 1.89e-05 CTATTTGCGA GCAAACAA TGGCAAACCT chr3L:15495095-15495215 23 1.89e-05 TTTTTTGAAT GCAAACAA GAGCGTGGAG chr3R:9892710-9892830 104 1.89e-05 AGTAAATAAT GCAAACAA CACGCGCAG chrX:16089741-16089861 34 1.89e-05 CCTCACaaca gcaaacaa caaataaaaa chr3L:3755807-3755927 37 1.89e-05 AACCAACTGG GCAAACAA GTTGGAGAAC chr3L:16429572-16429692 95 1.89e-05 ATGGTAAATA GCAAACAA CAAATAGTAA chr3L:8835018-8835138 104 2.91e-05 CCTTCGCCGG GCAAACAC TTATGTAGc chr2R:17274144-17274264 30 2.91e-05 GCACACCAAT GCAAACAC GATTACAACA chr2R:14031237-14031357 47 2.91e-05 ATACATAAAT GCAAACAC TTTGTGCAAA chr3R:13820550-13820670 85 2.91e-05 aaataaataC GCAAACAC ACTTACACAA chrX:8128285-8128405 33 2.91e-05 tGCGATAAAG GCAAACAC CGAAGCTTAA chr3R:15926063-15926183 54 2.91e-05 GCAATATAAG GCAAACAC TGGAGTTTGT chr3R:20259524-20259644 60 6.42e-05 TGTTGACGAG GTAAACAA GGCAAACTTA chr2L:21037855-21037975 52 6.42e-05 TGTTTGCCAT GTAAACAA ATAAACAAAT chr3R:29480048-29480168 103 6.42e-05 GACAGCCAAA GTAAACAA AGCCGCATCG chrX:11846456-11846576 58 6.42e-05 TCTTAAAAAT GTAAACAA GTTACTTGGA chr2L:16523262-16523382 10 6.42e-05 AATGAATGA GTAAACAA AAACAAACGC chrX:12889258-12889378 76 6.42e-05 AAGGGGAGAA GTAAACAA AGGCGACGAT chr2R:9266560-9266680 55 6.42e-05 ATTCGGAAAT GTAAACAA ACCAAACGTA chr3L:2734454-2734574 98 6.42e-05 TATCAGCAGG GTAAACAA TAACAAAAGG chr2L:6291862-6291982 18 6.42e-05 TTTATCGAAA GTAAACAA ACAGCGTGAG chr2R:6464946-6465066 75 6.42e-05 cagcataaaa gtaaacaa cagcataaca chr2R:11232613-11232733 53 6.42e-05 GTGGATTTTA GTAAACAA GCTTTCTTTA chr3R:26539258-26539378 81 6.42e-05 AAATAAACAA GTAAACAA GCCAGCAGCA chr3R:23181115-23181235 42 6.42e-05 GTATTTGTGT GTAAACAA GACTATAGAT chr2L:19998328-19998448 90 6.42e-05 TGCGTATACG GTAAACAA TTTGAAATAC chr2R:11946961-11947081 31 6.42e-05 TCTTCAGTCG GTAAACAA GCCCAGCTGA chr2R:14216993-14217113 68 1.18e-04 TATGCTTATC GCAAACAT ATGGTCACAA chr2R:7167912-7168032 33 1.18e-04 CGAAATGAGT GCAAATAA GCTGATTTTA chr2L:2906272-2906392 36 1.18e-04 TACTTAAACC GCAAACAT GACAAACTGA chr3L:4615205-4615325 72 1.18e-04 TGCTTGCTGA GCAAACAT GGTAGATAAA chr3L:4534091-4534211 59 1.18e-04 TGAGTATAAA GCAAATAA ATATAGTTAC chrX:15495741-15495861 47 1.18e-04 TCGAACGTGT GCAAATAA AATACAATTT chrX:15893965-15894085 16 1.18e-04 TTCATAGCTT GCAAATAA GGGGGGGGGG chr2L:1913181-1913301 112 1.18e-04 AAAACAGAAA GCAAATAA A chr3R:6401060-6401180 103 1.18e-04 aacaaataaa gcaaataa ataaatgcta chr3L:17656764-17656884 71 1.18e-04 AATTCGAAGA GCAAATAA TATTGTTTAT chr3L:5785362-5785482 38 1.18e-04 TAAACAAAGT GCAAACAT GGATTTATAT chr3L:2493907-2494027 14 1.18e-04 CTGAAGTCGA GCAAACAT ACACAAACAT chr3R:24293292-24293412 55 1.37e-04 TATTTTTTCA GTAAACAC AATTGATTGT chr3R:19060387-19060507 13 1.37e-04 AACTGAATGC GTAAACAC AATCGGGCCA chr3L:11491954-11492074 33 1.56e-04 GCATACAAAT GCAAATAC ACCACCCACA chr3R:15983671-15983791 24 1.56e-04 ATCAGCAATG GCAAATAC AATTGTTTGC chr2L:7215824-7215944 44 1.56e-04 AAATATTTAA GCAAATAC ACGAAAATTA chrX:17293607-17293727 103 2.91e-04 CATAATTATG ACAAACAA CGCGCGAAAT chr2R:9444508-9444628 2 2.91e-04 A GTAAACAT TGACCTTCTT chr2R:13470257-13470377 55 2.91e-04 AATAAGTTGG GTAAATAA ATGCATAAAT chr2L:5113537-5113657 59 2.91e-04 AATGACAAAC GTAAATAA ACATTTAGTT chr3L:17113352-17113472 70 2.91e-04 atatTGAAGT GTAAATAA ACCAGCTTTT chr3R:14744526-14744646 92 2.91e-04 CCCAAAATGT GTAAATAA GGCCTTAAAT chr2L:3397758-3397878 72 2.91e-04 GTTTCGACTC GTAAATAA TTACAATTGC chr3R:21825253-21825373 70 2.91e-04 TATTTGACTT GTAAATAA ATAAACAAGG chr2R:19683238-19683358 100 2.91e-04 TTGCAATTCA ACAAACAA CGTCATCATC chr3R:21271370-21271490 101 2.91e-04 TACAGAAGAA ACAAACAA AAGACAAGCT chrX:13645186-13645306 1 2.91e-04 . ACAAACAA TTAAAGCAAC chrX:4936607-4936727 72 3.26e-04 CATATGATAT GCAAATAT GAAGCGCAAC chr2L:9775370-9775490 82 3.26e-04 ATTGTTTGCG GCAAATAT ATTATTATGT chr3L:15591356-15591476 63 3.26e-04 AGTATTACTT GCAAATAT TGAACCAGCA chr3L:14274809-14274929 55 3.26e-04 TTTGCCGCCG GCAAATAT TTAAAAGGTG chr2L:12509596-12509716 79 3.26e-04 ACAAATAATA GCAAATAT TGAACCATTG chrX:19847731-19847851 9 3.26e-04 GTGCGTTT GCAAATAT TAGACAAAAA chr2R:14109823-14109943 38 3.80e-04 ATCAATAAAA GTAAATAC GAGAAATGAA chr2R:22539998-22540118 91 3.80e-04 CAGATACTCT GTAAATAC GCGCACATAC chr3L:17808947-17809067 77 3.80e-04 TGTAGGTAGT GTAAATAC GTACAATTTA chr2L:9614173-9614293 22 3.80e-04 ATATTGGGAA GTAAATAC GTGAAAGCAT chr2R:7756389-7756509 3 3.80e-04 AA ACAAACAC GGGACAGCTA chr2R:13532008-13532128 58 3.80e-04 ATAAAGTAAG GTAAATAC TATTTACATC chr2L:5547496-5547616 74 4.43e-04 GATTTGGACA ATAAACAA GCGAGTACAC chrX:2653577-2653697 16 4.43e-04 ATTCCAAAAA ATAAACAA AAATATTTTG chr3L:11484609-11484729 36 4.43e-04 GGGAAATAAT ATAAACAA CTGCTCAATT chr3L:3788945-3789065 112 6.05e-04 tatatacata gtaaatat g chr3L:19191965-19192085 94 6.05e-04 GAAAATAAAT ACAAATAA ATCCACACAA chr2L:1646682-1646802 15 6.05e-04 GCAAACTGTA GTAAATAT CATTTATCAT chr3L:11273608-11273728 53 6.05e-04 AGCTAAACTA ACAAATAA ATGTAAAGGC chr2R:24897695-24897815 94 6.05e-04 ATTTTCTTAC GTAAATAT AGCAAAAGGA chrX:10115659-10115779 62 6.05e-04 TGATCATTGG GTAAATAT CAACAAGCGG chr2L:18717484-18717604 75 6.05e-04 AGACGGGCAG ACAAACAT CTAAGCACAC chr2L:20016572-20016692 86 6.05e-04 AAATAGTTTC ACAAATAA AGACAACTAG chr3L:8041785-8041905 73 6.05e-04 ACAGTGATGT ACAAACAT AACTCATATT chr3R:14526794-14526914 69 6.05e-04 TAAAATGCAG ACAAATAA AGGGAAATGA chr3R:18785942-18786062 24 6.05e-04 GTCTGTCAAC ACAAATAA AGAAATGCCA chr2L:10497530-10497650 45 6.05e-04 ATCAACCTAT GTAAATAT GTGGCCAAAT chr3R:9550395-9550515 69 6.05e-04 GGTATTTGTG GTAAATAT TATTATAAAG chr2L:470018-470138 73 6.05e-04 GTATGGCTCT GTAAATAT CTGAGTGTTA chr2R:10485620-10485740 28 6.39e-04 TTGAATACAT ATAAACAC AGCTTCCGGT chr3L:14673569-14673689 28 6.39e-04 ATGACTAAAA ATAAACAC AAGTAATTGC chrX:14634838-14634958 1 6.73e-04 . ACAAATAC ATTGTAAGTT chr3R:26908885-26909005 103 7.27e-04 GAATTCGTAG GGAAACAA GCGACGGCAC chr2R:19138014-19138134 79 7.27e-04 TTTGCAAACC GGAAACAA TTTCCTCCTG chr2R:6220024-6220144 97 7.27e-04 TAAGGTATTC GGAAACAA AATAGTTGTT chr2R:10212472-10212592 81 7.27e-04 TTGACGGCGA GAAAACAA TATTTATGAC chr3L:14354663-14354783 37 7.27e-04 TGTTTGTTGA GAAAACAA AGCTAATAGA chr3L:16056357-16056477 58 9.08e-04 TGTTTGCTTG ATAAATAA GTGGAGGGAA chr3L:16640659-16640779 30 9.08e-04 ACTGGGTGCA ATAAACAT AAATAATAAT chr3L:3078938-3079058 13 9.08e-04 CGAATGGCGA ATAAATAA AAAACGCGAG chr2L:3228857-3228977 11 9.08e-04 GCTATTGACA ATAAATAA TTAGTAACGT chr2R:17272612-17272732 45 9.08e-04 CTCAGCTTGC ATAAACAT AGAGTCGATC chr3L:1083464-1083584 56 9.08e-04 aattatatat ataaataa tatacaatat chr2R:14485389-14485509 2 9.08e-04 G ATAAATAA ATTGTTAATC chr2L:18496943-18497063 75 9.08e-04 AAATCGTTGG ATAAACAT GAAACAGTTG chr2R:22542846-22542966 26 9.08e-04 TCAGCTTGAA ATAAATAA GTAGTTCCCC chr2L:9505837-9505957 86 9.08e-04 tttttGTGCT ATAAACAT GGAGTGCCTT chr2L:14307688-14307808 1 9.08e-04 . ATAAACAT ACAAATTGTA chr2R:14487726-14487846 82 9.71e-04 TTAATCTTTA ACAAATAT AACCTTGAAG chrX:5989464-5989584 66 9.71e-04 TGAAATTTTT ACAAATAT GTAGAACTAT chrX:4686854-4686974 38 1.00e-03 AAAGTAGGTC GAAAACAC CACGCTCCAT chr3R:28327313-28327433 91 1.22e-03 AAAAGACATG GAAAATAA TTTCACTCTC chr2R:14915046-14915166 95 1.22e-03 AGTTCGTTGA GAAAATAA AGTTGTGAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:22387693-22387813 1.9e-05 80_[+1]_32 chr2L:9497376-9497496 1.9e-05 31_[+1]_81 chr3L:17896110-17896230 1.9e-05 35_[+1]_77 chr3L:483960-484080 1.9e-05 85_[+1]_27 chr2L:7158931-7159051 1.9e-05 28_[+1]_84 chr3L:20915264-20915384 1.9e-05 49_[+1]_63 chr3L:15495095-15495215 1.9e-05 22_[+1]_90 chr3R:9892710-9892830 1.9e-05 103_[+1]_9 chrX:16089741-16089861 1.9e-05 33_[+1]_79 chr3L:3755807-3755927 1.9e-05 36_[+1]_76 chr3L:16429572-16429692 1.9e-05 94_[+1]_18 chr3L:8835018-8835138 2.9e-05 103_[+1]_9 chr2R:17274144-17274264 2.9e-05 29_[+1]_83 chr2R:14031237-14031357 2.9e-05 46_[+1]_66 chr3R:13820550-13820670 2.9e-05 84_[+1]_28 chrX:8128285-8128405 2.9e-05 32_[+1]_80 chr3R:15926063-15926183 2.9e-05 53_[+1]_59 chr3R:20259524-20259644 6.4e-05 59_[+1]_53 chr2L:21037855-21037975 6.4e-05 51_[+1]_61 chr3R:29480048-29480168 6.4e-05 102_[+1]_10 chrX:11846456-11846576 6.4e-05 57_[+1]_55 chr2L:16523262-16523382 6.4e-05 9_[+1]_103 chrX:12889258-12889378 6.4e-05 75_[+1]_37 chr2R:9266560-9266680 6.4e-05 54_[+1]_58 chr3L:2734454-2734574 6.4e-05 97_[+1]_15 chr2L:6291862-6291982 6.4e-05 17_[+1]_95 chr2R:6464946-6465066 6.4e-05 74_[+1]_38 chr2R:11232613-11232733 6.4e-05 52_[+1]_60 chr3R:26539258-26539378 6.4e-05 80_[+1]_32 chr3R:23181115-23181235 6.4e-05 41_[+1]_71 chr2L:19998328-19998448 6.4e-05 89_[+1]_23 chr2R:11946961-11947081 6.4e-05 30_[+1]_82 chr2R:14216993-14217113 0.00012 67_[+1]_45 chr2R:7167912-7168032 0.00012 32_[+1]_80 chr2L:2906272-2906392 0.00012 35_[+1]_77 chr3L:4615205-4615325 0.00012 71_[+1]_41 chr3L:4534091-4534211 0.00012 58_[+1]_54 chrX:15495741-15495861 0.00012 46_[+1]_66 chrX:15893965-15894085 0.00012 15_[+1]_97 chr2L:1913181-1913301 0.00012 111_[+1]_1 chr3R:6401060-6401180 0.00012 102_[+1]_10 chr3L:17656764-17656884 0.00012 70_[+1]_42 chr3L:5785362-5785482 0.00012 37_[+1]_75 chr3L:2493907-2494027 0.00012 13_[+1]_99 chr3R:24293292-24293412 0.00014 54_[+1]_58 chr3R:19060387-19060507 0.00014 12_[+1]_100 chr3L:11491954-11492074 0.00016 32_[+1]_80 chr3R:15983671-15983791 0.00016 23_[+1]_89 chr2L:7215824-7215944 0.00016 43_[+1]_69 chrX:17293607-17293727 0.00029 102_[+1]_10 chr2R:9444508-9444628 0.00029 1_[+1]_111 chr2R:13470257-13470377 0.00029 54_[+1]_58 chr2L:5113537-5113657 0.00029 58_[+1]_54 chr3L:17113352-17113472 0.00029 69_[+1]_43 chr3R:14744526-14744646 0.00029 91_[+1]_21 chr2L:3397758-3397878 0.00029 71_[+1]_41 chr3R:21825253-21825373 0.00029 69_[+1]_43 chr2R:19683238-19683358 0.00029 99_[+1]_13 chr3R:21271370-21271490 0.00029 100_[+1]_12 chrX:13645186-13645306 0.00029 [+1]_112 chrX:4936607-4936727 0.00033 71_[+1]_41 chr2L:9775370-9775490 0.00033 81_[+1]_31 chr3L:15591356-15591476 0.00033 62_[+1]_50 chr3L:14274809-14274929 0.00033 54_[+1]_58 chr2L:12509596-12509716 0.00033 78_[+1]_34 chrX:19847731-19847851 0.00033 8_[+1]_104 chr2R:14109823-14109943 0.00038 37_[+1]_75 chr2R:22539998-22540118 0.00038 90_[+1]_22 chr3L:17808947-17809067 0.00038 76_[+1]_36 chr2L:9614173-9614293 0.00038 21_[+1]_91 chr2R:7756389-7756509 0.00038 2_[+1]_110 chr2R:13532008-13532128 0.00038 57_[+1]_55 chr2L:5547496-5547616 0.00044 73_[+1]_39 chrX:2653577-2653697 0.00044 15_[+1]_97 chr3L:11484609-11484729 0.00044 35_[+1]_77 chr3L:3788945-3789065 0.00061 111_[+1]_1 chr3L:19191965-19192085 0.00061 93_[+1]_19 chr2L:1646682-1646802 0.00061 14_[+1]_98 chr3L:11273608-11273728 0.00061 52_[+1]_60 chr2R:24897695-24897815 0.00061 93_[+1]_19 chrX:10115659-10115779 0.00061 61_[+1]_51 chr2L:18717484-18717604 0.00061 74_[+1]_38 chr2L:20016572-20016692 0.00061 85_[+1]_27 chr3L:8041785-8041905 0.00061 72_[+1]_40 chr3R:14526794-14526914 0.00061 68_[+1]_44 chr3R:18785942-18786062 0.00061 23_[+1]_89 chr2L:10497530-10497650 0.00061 44_[+1]_68 chr3R:9550395-9550515 0.00061 68_[+1]_44 chr2L:470018-470138 0.00061 72_[+1]_40 chr2R:10485620-10485740 0.00064 27_[+1]_85 chr3L:14673569-14673689 0.00064 27_[+1]_85 chrX:14634838-14634958 0.00067 [+1]_112 chr3R:26908885-26909005 0.00073 102_[+1]_10 chr2R:19138014-19138134 0.00073 78_[+1]_34 chr2R:6220024-6220144 0.00073 96_[+1]_16 chr2R:10212472-10212592 0.00073 80_[+1]_32 chr3L:14354663-14354783 0.00073 36_[+1]_76 chr3L:16056357-16056477 0.00091 57_[+1]_55 chr3L:16640659-16640779 0.00091 29_[+1]_83 chr3L:3078938-3079058 0.00091 12_[+1]_100 chr2L:3228857-3228977 0.00091 10_[+1]_102 chr2R:17272612-17272732 0.00091 44_[+1]_68 chr3L:1083464-1083584 0.00091 55_[+1]_57 chr2R:14485389-14485509 0.00091 1_[+1]_111 chr2L:18496943-18497063 0.00091 74_[+1]_38 chr2R:22542846-22542966 0.00091 25_[+1]_87 chr2L:9505837-9505957 0.00091 85_[+1]_27 chr2L:14307688-14307808 0.00091 [+1]_112 chr2R:14487726-14487846 0.00097 81_[+1]_31 chrX:5989464-5989584 0.00097 65_[+1]_47 chrX:4686854-4686974 0.001 37_[+1]_75 chr3R:28327313-28327433 0.0012 90_[+1]_22 chr2R:14915046-14915166 0.0012 94_[+1]_18 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GYAAAYAA width=8 seqs=113 chr2R:22387693-22387813 ( 81) GCAAACAA 1 chr2L:9497376-9497496 ( 32) GCAAACAA 1 chr3L:17896110-17896230 ( 36) GCAAACAA 1 chr3L:483960-484080 ( 86) GCAAACAA 1 chr2L:7158931-7159051 ( 29) GCAAACAA 1 chr3L:20915264-20915384 ( 50) GCAAACAA 1 chr3L:15495095-15495215 ( 23) GCAAACAA 1 chr3R:9892710-9892830 ( 104) GCAAACAA 1 chrX:16089741-16089861 ( 34) GCAAACAA 1 chr3L:3755807-3755927 ( 37) GCAAACAA 1 chr3L:16429572-16429692 ( 95) GCAAACAA 1 chr3L:8835018-8835138 ( 104) GCAAACAC 1 chr2R:17274144-17274264 ( 30) GCAAACAC 1 chr2R:14031237-14031357 ( 47) GCAAACAC 1 chr3R:13820550-13820670 ( 85) GCAAACAC 1 chrX:8128285-8128405 ( 33) GCAAACAC 1 chr3R:15926063-15926183 ( 54) GCAAACAC 1 chr3R:20259524-20259644 ( 60) GTAAACAA 1 chr2L:21037855-21037975 ( 52) GTAAACAA 1 chr3R:29480048-29480168 ( 103) GTAAACAA 1 chrX:11846456-11846576 ( 58) GTAAACAA 1 chr2L:16523262-16523382 ( 10) GTAAACAA 1 chrX:12889258-12889378 ( 76) GTAAACAA 1 chr2R:9266560-9266680 ( 55) GTAAACAA 1 chr3L:2734454-2734574 ( 98) GTAAACAA 1 chr2L:6291862-6291982 ( 18) GTAAACAA 1 chr2R:6464946-6465066 ( 75) GTAAACAA 1 chr2R:11232613-11232733 ( 53) GTAAACAA 1 chr3R:26539258-26539378 ( 81) GTAAACAA 1 chr3R:23181115-23181235 ( 42) GTAAACAA 1 chr2L:19998328-19998448 ( 90) GTAAACAA 1 chr2R:11946961-11947081 ( 31) GTAAACAA 1 chr2R:14216993-14217113 ( 68) GCAAACAT 1 chr2R:7167912-7168032 ( 33) GCAAATAA 1 chr2L:2906272-2906392 ( 36) GCAAACAT 1 chr3L:4615205-4615325 ( 72) GCAAACAT 1 chr3L:4534091-4534211 ( 59) GCAAATAA 1 chrX:15495741-15495861 ( 47) GCAAATAA 1 chrX:15893965-15894085 ( 16) GCAAATAA 1 chr2L:1913181-1913301 ( 112) GCAAATAA 1 chr3R:6401060-6401180 ( 103) GCAAATAA 1 chr3L:17656764-17656884 ( 71) GCAAATAA 1 chr3L:5785362-5785482 ( 38) GCAAACAT 1 chr3L:2493907-2494027 ( 14) GCAAACAT 1 chr3R:24293292-24293412 ( 55) GTAAACAC 1 chr3R:19060387-19060507 ( 13) GTAAACAC 1 chr3L:11491954-11492074 ( 33) GCAAATAC 1 chr3R:15983671-15983791 ( 24) GCAAATAC 1 chr2L:7215824-7215944 ( 44) GCAAATAC 1 chrX:17293607-17293727 ( 103) ACAAACAA 1 chr2R:9444508-9444628 ( 2) GTAAACAT 1 chr2R:13470257-13470377 ( 55) GTAAATAA 1 chr2L:5113537-5113657 ( 59) GTAAATAA 1 chr3L:17113352-17113472 ( 70) GTAAATAA 1 chr3R:14744526-14744646 ( 92) GTAAATAA 1 chr2L:3397758-3397878 ( 72) GTAAATAA 1 chr3R:21825253-21825373 ( 70) GTAAATAA 1 chr2R:19683238-19683358 ( 100) ACAAACAA 1 chr3R:21271370-21271490 ( 101) ACAAACAA 1 chrX:13645186-13645306 ( 1) ACAAACAA 1 chrX:4936607-4936727 ( 72) GCAAATAT 1 chr2L:9775370-9775490 ( 82) GCAAATAT 1 chr3L:15591356-15591476 ( 63) GCAAATAT 1 chr3L:14274809-14274929 ( 55) GCAAATAT 1 chr2L:12509596-12509716 ( 79) GCAAATAT 1 chrX:19847731-19847851 ( 9) GCAAATAT 1 chr2R:14109823-14109943 ( 38) GTAAATAC 1 chr2R:22539998-22540118 ( 91) GTAAATAC 1 chr3L:17808947-17809067 ( 77) GTAAATAC 1 chr2L:9614173-9614293 ( 22) GTAAATAC 1 chr2R:7756389-7756509 ( 3) ACAAACAC 1 chr2R:13532008-13532128 ( 58) GTAAATAC 1 chr2L:5547496-5547616 ( 74) ATAAACAA 1 chrX:2653577-2653697 ( 16) ATAAACAA 1 chr3L:11484609-11484729 ( 36) ATAAACAA 1 chr3L:3788945-3789065 ( 112) GTAAATAT 1 chr3L:19191965-19192085 ( 94) ACAAATAA 1 chr2L:1646682-1646802 ( 15) GTAAATAT 1 chr3L:11273608-11273728 ( 53) ACAAATAA 1 chr2R:24897695-24897815 ( 94) GTAAATAT 1 chrX:10115659-10115779 ( 62) GTAAATAT 1 chr2L:18717484-18717604 ( 75) ACAAACAT 1 chr2L:20016572-20016692 ( 86) ACAAATAA 1 chr3L:8041785-8041905 ( 73) ACAAACAT 1 chr3R:14526794-14526914 ( 69) ACAAATAA 1 chr3R:18785942-18786062 ( 24) ACAAATAA 1 chr2L:10497530-10497650 ( 45) GTAAATAT 1 chr3R:9550395-9550515 ( 69) GTAAATAT 1 chr2L:470018-470138 ( 73) GTAAATAT 1 chr2R:10485620-10485740 ( 28) ATAAACAC 1 chr3L:14673569-14673689 ( 28) ATAAACAC 1 chrX:14634838-14634958 ( 1) ACAAATAC 1 chr3R:26908885-26909005 ( 103) GGAAACAA 1 chr2R:19138014-19138134 ( 79) GGAAACAA 1 chr2R:6220024-6220144 ( 97) GGAAACAA 1 chr2R:10212472-10212592 ( 81) GAAAACAA 1 chr3L:14354663-14354783 ( 37) GAAAACAA 1 chr3L:16056357-16056477 ( 58) ATAAATAA 1 chr3L:16640659-16640779 ( 30) ATAAACAT 1 chr3L:3078938-3079058 ( 13) ATAAATAA 1 chr2L:3228857-3228977 ( 11) ATAAATAA 1 chr2R:17272612-17272732 ( 45) ATAAACAT 1 chr3L:1083464-1083584 ( 56) ATAAATAA 1 chr2R:14485389-14485509 ( 2) ATAAATAA 1 chr2L:18496943-18497063 ( 75) ATAAACAT 1 chr2R:22542846-22542966 ( 26) ATAAATAA 1 chr2L:9505837-9505957 ( 86) ATAAACAT 1 chr2L:14307688-14307808 ( 1) ATAAACAT 1 chr2R:14487726-14487846 ( 82) ACAAATAT 1 chrX:5989464-5989584 ( 66) ACAAATAT 1 chrX:4686854-4686974 ( 38) GAAAACAC 1 chr3R:28327313-28327433 ( 91) GAAAATAA 1 chr2R:14915046-14915166 ( 95) GAAAATAA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.57664 E= 5.0e-018 -23 -1346 201 -1346 -286 143 -276 50 163 -1346 -1346 -1346 163 -1346 -1346 -1346 163 -1346 -1346 -1346 -1346 168 -1346 45 163 -1346 -1346 -1346 81 10 -1346 -39 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 113 E= 5.0e-018 0.274336 0.000000 0.725664 0.000000 0.044248 0.469027 0.026549 0.460177 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.557522 0.000000 0.442478 1.000000 0.000000 0.000000 0.000000 0.566372 0.185841 0.000000 0.247788 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GYAAAYAA MEME-1 regular expression -------------------------------------------------------------------------------- [GA][CT]AAA[CT]A[AT] -------------------------------------------------------------------------------- Time 7.82 secs. ******************************************************************************** ******************************************************************************** MOTIF TGTTTGYK MEME-2 width = 8 sites = 107 llr = 752 E-value = 3.9e-012 ******************************************************************************** -------------------------------------------------------------------------------- Motif TGTTTGYK MEME-2 Description -------------------------------------------------------------------------------- Simplified A :3:::2:1 pos.-specific C ::::::52 probability G :7:2:8:2 matrix T a:a8a:54 bits 2.5 2.3 2.0 1.8 * Relative 1.5 * * ** Entropy 1.3 *** ** (10.1 bits) 1.0 ******* 0.8 ******* 0.5 ******* 0.3 ******** 0.0 -------- Multilevel TGTTTGTT consensus A CG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYK MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:19413318-19413438 70 3.13e-05 ACATCACACT TGTTTGCT GCGGGACACA chr2L:9775370-9775490 74 3.13e-05 AATAGGAAAT TGTTTGCG GCAAATATAT chr2R:22539998-22540118 66 3.13e-05 TAAATTTCCA TGTTTGCG CACTTAACAG chr3R:10521309-10521429 86 3.13e-05 ACAACTTCTG TGTTTGCT GTTCTGGTTT chr3L:16056357-16056477 48 3.13e-05 TCAACATCAA TGTTTGCT TGATAAATAA chr2L:9497376-9497496 66 3.13e-05 GTTGATGCGT TGTTTGCT CGTTTGTCTC chr3R:23947146-23947266 50 3.13e-05 GCACATCATC TGTTTGCG TTGGTAAATA chr3L:19073275-19073395 8 3.13e-05 AGGCGCG TGTTTGCT GAGGGAGTTT chr2L:3397758-3397878 10 3.13e-05 AACTCGGTT TGTTTGCT TGTTTGTTCG chrX:13108534-13108654 22 3.13e-05 TGTCCAGATA TGTTTGCT TTAACTTCAA chr2L:7158931-7159051 102 3.13e-05 GTGTACATTG TGTTTGCT TTGGGGTGAG chr3L:4311438-4311558 24 3.13e-05 ATTGGCTGTT TGTTTGCT TCGATCGAAA chr2L:21037855-21037975 42 4.21e-05 GTTTGGTTTA TGTTTGCC ATGTAAACAA chr3L:8835018-8835138 88 4.21e-05 TCTGTACAAA TGTTTGCC TTCGCCGGGC chr3R:15983671-15983791 35 4.21e-05 CAAATACAAT TGTTTGCC CTGAAAAATT chr3L:16431182-16431302 97 4.21e-05 tttatttgtt tgtttgCC TAACGCTTTT chr3R:26908885-26909005 74 1.00e-04 AGTCAAACAC TGTTTGTT GACGTTACCT chr3L:16640659-16640779 3 1.00e-04 TA TGTTTGTG GTGCCATGCA chr2R:13305662-13305782 64 1.00e-04 TCGGGCCTTT TGTTTGTG GCTGGTCAAT chr2L:8938132-8938252 37 1.00e-04 AGGTTATAAA TGTTTGTT TAACTTTGTT chr3L:8925811-8925931 67 1.00e-04 GTTATTATGT TGTTTGTT CGTTGTTTAT chr3R:15677749-15677869 39 1.00e-04 CTTGTAATGC TGTTTGTT TATGCTCTCA chr3L:4615205-4615325 24 1.00e-04 TATAAAtgtt tgtttgtt tgtctgtctg chrX:4457978-4458098 110 1.00e-04 GGTATTCAAA TGTTTGTT CCC chr3L:14354663-14354783 27 1.00e-04 ACTCGTCGTT TGTTTGTT GAGAAAACAA chr2R:11062384-11062504 42 1.00e-04 tgttatttgt tgtttgtt tttgtgtCGA chr3L:4220787-4220907 38 1.00e-04 CTTTCATTTT TGTTTGTT ATACAATATT chr3R:23181115-23181235 64 1.00e-04 ATAGATATTA TGTTTGTT ATTGGTCATT chr3L:16429572-16429692 62 1.00e-04 TGTTTCTTTT TGTTTGTT CCATAACAAC chr2R:22387693-22387813 96 1.21e-04 CAACAATATT TGTTTGTC TGCATGAGCA chr3R:24293292-24293412 89 1.21e-04 TAAATATTTA TGTTTGTC AAAATACTGT chr3R:19467655-19467775 10 1.21e-04 TACCCACAT TGTTTGTC TACAGCGACG chr2L:14307688-14307808 48 1.21e-04 ATGCTATTTT TGTTTGTC TTTACTAATT chr3L:18272376-18272496 108 1.38e-04 GTGGTTATGG TGTGTGCT AGTAT chr2R:23740377-23740497 100 1.38e-04 TGTCTGCGGC TGTGTGCT TAGCCGCAAT chr3R:19182994-19183114 95 1.38e-04 TTTGTTTGGC TGTGTGCG AAGTTGGCTT chr2R:24293589-24293709 3 1.58e-04 TT TGTTTGCA TGTGCGTCGG chr3L:14622546-14622666 66 1.58e-04 GAGATTAAAT TGTTTGCA TACATGGCGT chr2L:7215824-7215944 78 1.58e-04 TAGAAATGAC TGTTTGCA TGTGCCGAGC chr3R:22573748-22573868 6 1.58e-04 CCGTT TGTTTGCA ATTGGAATTG chr3L:1169734-1169854 26 2.20e-04 TATATTGTAT TATTTGCG CGGCGATAAG chr2L:3228857-3228977 41 2.20e-04 TGCTGTAGGT TGTGTGCC ATACAATTTA chr3L:14274809-14274929 18 2.20e-04 AAATATTTAT TATTTGCT TATAAGGCCA chr2R:18877792-18877912 10 2.20e-04 ttatttatt tatttgct tatttatCAA chr3R:5059487-5059607 49 2.20e-04 CTATTAACTT TATTTGCT GTTTATTTTA chrX:15495741-15495861 1 2.20e-04 . TGTGTGCC TTTGGGTACC chr3L:20915264-20915384 41 2.20e-04 TCAATAACAC TATTTGCG AGCAAACAAT chr2R:13532008-13532128 30 2.20e-04 AGATTGCGGC TATTTGCG GAGAGGGCAC chr3R:16069431-16069551 48 2.52e-04 TAGGAAATTT TGTGTGTT TTGGTTTTTG chr3L:12668131-12668251 87 2.52e-04 TGCATGTGCG TGTGTGTT GGTTTGGAGG chr3R:9048819-9048939 38 2.52e-04 tgtgtgggtg tgtgtgtg tAAATGCTTT chr3L:7996515-7996635 3 2.52e-04 AT TGTGTGTG ATCTTGAGCA chr2R:18664376-18664496 30 2.52e-04 CCAAAAGCAT TGTGTGTG GCTTCGAAAA chr2L:18496943-18497063 14 2.52e-04 CATTTGTTTA TGTGTGTT TTAAGCTGCT chr3L:15597171-15597291 65 2.52e-04 TCAATTATCT TGTGTGTG ATATTTCACT chr3R:19060387-19060507 85 2.52e-04 tgtcaatata tgtgtgtg taaatacata chr3L:20494043-20494163 2 3.09e-04 A TGTTTGTA TTGTCGTTAT chr3R:14300082-14300202 96 3.09e-04 ACTGGACTAA TATTTGCC TAAAGCCAGA chr2L:16523262-16523382 59 3.09e-04 AGTTGCTGCA TATTTGCC TTGCACTTTT chr3L:2433452-2433572 42 3.09e-04 ACTATACTAC TATTTGCC CACTTGAGAT chr3L:12045591-12045711 16 3.09e-04 TATCTATCTG TATTTGCC CGACGCTTAA chr2R:17078066-17078186 24 3.09e-04 GAGGTGACTT TGTTTGTA CCTTCAACCT chr2L:19998328-19998448 48 3.09e-04 GTAAGGTAAA TATTTGCC ACAAACTTTT chr3L:4380488-4380608 103 4.24e-04 CGTTTGTTTA TATTTGTG GCAGGTAAAA chr2L:12463149-12463269 65 4.24e-04 TTTGTTTCTG TATTTGTG TTTTGAATCA chr3L:17532279-17532399 14 4.24e-04 TCTTGAATGT TGTGTGTC TACACTTTAT chr2L:425606-425726 68 4.24e-04 AAGCGCCAAA TATTTGTT GATAAATGTT chrX:2653577-2653697 82 4.24e-04 CTGCCTTGTT TATTTGTT TACATTAAGC chr2R:14031237-14031357 65 4.24e-04 TTTGTGCAAA TATTTGTG TCATTAAACA chr3L:16010340-16010460 83 4.24e-04 AATAGGGTTC TATTTGTT CAGCGATTGC chr2L:10276603-10276723 11 4.24e-04 TGTTCTGAAT TATTTGTT ATAACTTGAA chr2R:11232613-11232733 7 4.24e-04 GCATAC TATTTGTT ATGGAAAACT chr3L:18795555-18795675 30 4.24e-04 GCTTAAGATA TATTTGTG ATCGATTTTA chr3R:14526794-14526914 20 4.24e-04 AAAACAGTTG TATTTGTG TTTCGGGCGG chr2L:16532044-16532164 60 4.24e-04 TTTTGTTAAA TATTTGTT GACTTATTAG chr3L:137056-137176 30 4.24e-04 ACCTTGTGTT TATTTGTG CTAAGCCAAT chr3R:18785942-18786062 55 4.24e-04 TTACTTTCTC TATTTGTG GATAAGTAAA chr3R:9550395-9550515 61 4.24e-04 TTGATCAGGG TATTTGTG GTAAATATTA chrX:17293607-17293727 35 4.60e-04 TAGCTAGTTT TATTTGTC CAAGTGTAAG chr2L:4916003-4916123 68 5.28e-04 TTTCGCTCAG TGTTTACT CTTCCGCTCT chr2R:7885870-7885990 3 5.28e-04 TA TGTTTACT ACAAAAATAT chr2L:2906272-2906392 16 5.28e-04 TGTGGTTTCG TGTTTACG TGTACTTAAA chr3L:2734454-2734574 46 5.28e-04 GTGTTGCTTC TGTTTACT TTTGAGCTTA chr2R:16159281-16159401 30 5.28e-04 taacaataaA TGTTTACT AATTGCGCAA chr3L:15495095-15495215 5 5.28e-04 AAAA TGTTTACG TTTTTTGAAT chr3L:17656764-17656884 109 5.28e-04 CACTATCGCC TGTTTACG TTTC chr2R:12729337-12729457 46 6.14e-04 CCCTTGTTTA TATTTGCA TAAATATTTA chr3L:5785362-5785482 59 6.14e-04 TTTATATCAA TATTTGCA CACAATTTGT chr2R:11946961-11947081 76 6.14e-04 CCCAAATCAA TATTTGCA CCCAAGTTAT chr3L:20406426-20406546 16 7.50e-04 TGATAAGatt tgtttatt tatttattat chr2L:22144316-22144436 96 7.50e-04 AACgtattta tgtgtgta tgtatatgta chrX:11823182-11823302 68 7.50e-04 TTGTTCAATT TGTTTATT TATTGTCTTT chr2R:14906337-14906457 24 7.50e-04 CATACATACA TGTGTGTA TACTTTTTAT chr2L:7994708-7994828 7 7.50e-04 CATACA TATGTGCC TATTTAGTAA chr2R:10485620-10485740 57 7.50e-04 GTGTTTTCCA TGTTTATT TTCCTATTCC chr2R:9269523-9269643 79 7.50e-04 CGATTGAATA TGTTTATT TTCAATTCCT chr2R:19683238-19683358 78 7.50e-04 TATTATCTGA TGTTTATT TTTCTTGCAA chr3R:26539258-26539378 24 7.50e-04 CTGTCGCTGT TGTTTATT TGGTTTTGCC chr2L:8285338-8285458 35 7.50e-04 AATTGCTGCT TGTTTATT TGAGGTCTTT chr2L:12049233-12049353 74 7.50e-04 TGAATTGAAT TGTTTATT TATGTTTTGA chr2L:7495109-7495229 76 7.50e-04 CAAGGCTGTA TGTTTATG AATGTGTTGC chrX:3024666-3024786 98 9.10e-04 ttgtgccttg tatttGTA TGGCTTGCAG chr3R:8964116-8964236 3 9.10e-04 GT TATTTGTA CAAAACATTT chr2L:9614173-9614293 76 9.10e-04 AGTTTATTTA TATTTGTA TACACACTTA chr3R:28674818-28674938 32 9.10e-04 AAGCCATGCA TGTTTATC TATGTGAACA chr2L:7966167-7966287 15 9.61e-04 TCTAAAAAAG TGTGTACT ACTATAAAAT chr2R:10212472-10212592 63 9.61e-04 ATTTTTGCCT TGTGTACT TTGACGGCGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYK MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:19413318-19413438 3.1e-05 69_[+2]_43 chr2L:9775370-9775490 3.1e-05 73_[+2]_39 chr2R:22539998-22540118 3.1e-05 65_[+2]_47 chr3R:10521309-10521429 3.1e-05 85_[+2]_27 chr3L:16056357-16056477 3.1e-05 47_[+2]_65 chr2L:9497376-9497496 3.1e-05 65_[+2]_47 chr3R:23947146-23947266 3.1e-05 49_[+2]_63 chr3L:19073275-19073395 3.1e-05 7_[+2]_105 chr2L:3397758-3397878 3.1e-05 9_[+2]_103 chrX:13108534-13108654 3.1e-05 21_[+2]_91 chr2L:7158931-7159051 3.1e-05 101_[+2]_11 chr3L:4311438-4311558 3.1e-05 23_[+2]_89 chr2L:21037855-21037975 4.2e-05 41_[+2]_71 chr3L:8835018-8835138 4.2e-05 87_[+2]_25 chr3R:15983671-15983791 4.2e-05 34_[+2]_78 chr3L:16431182-16431302 4.2e-05 96_[+2]_16 chr3R:26908885-26909005 0.0001 73_[+2]_39 chr3L:16640659-16640779 0.0001 2_[+2]_110 chr2R:13305662-13305782 0.0001 63_[+2]_49 chr2L:8938132-8938252 0.0001 36_[+2]_76 chr3L:8925811-8925931 0.0001 66_[+2]_46 chr3R:15677749-15677869 0.0001 38_[+2]_74 chr3L:4615205-4615325 0.0001 23_[+2]_89 chrX:4457978-4458098 0.0001 109_[+2]_3 chr3L:14354663-14354783 0.0001 26_[+2]_86 chr2R:11062384-11062504 0.0001 41_[+2]_71 chr3L:4220787-4220907 0.0001 37_[+2]_75 chr3R:23181115-23181235 0.0001 63_[+2]_49 chr3L:16429572-16429692 0.0001 61_[+2]_51 chr2R:22387693-22387813 0.00012 95_[+2]_17 chr3R:24293292-24293412 0.00012 88_[+2]_24 chr3R:19467655-19467775 0.00012 9_[+2]_103 chr2L:14307688-14307808 0.00012 47_[+2]_65 chr3L:18272376-18272496 0.00014 107_[+2]_5 chr2R:23740377-23740497 0.00014 99_[+2]_13 chr3R:19182994-19183114 0.00014 94_[+2]_18 chr2R:24293589-24293709 0.00016 2_[+2]_110 chr3L:14622546-14622666 0.00016 65_[+2]_47 chr2L:7215824-7215944 0.00016 77_[+2]_35 chr3R:22573748-22573868 0.00016 5_[+2]_107 chr3L:1169734-1169854 0.00022 25_[+2]_87 chr2L:3228857-3228977 0.00022 40_[+2]_72 chr3L:14274809-14274929 0.00022 17_[+2]_95 chr2R:18877792-18877912 0.00022 9_[+2]_103 chr3R:5059487-5059607 0.00022 48_[+2]_64 chrX:15495741-15495861 0.00022 [+2]_112 chr3L:20915264-20915384 0.00022 40_[+2]_72 chr2R:13532008-13532128 0.00022 29_[+2]_83 chr3R:16069431-16069551 0.00025 47_[+2]_65 chr3L:12668131-12668251 0.00025 86_[+2]_26 chr3R:9048819-9048939 0.00025 37_[+2]_75 chr3L:7996515-7996635 0.00025 2_[+2]_110 chr2R:18664376-18664496 0.00025 29_[+2]_83 chr2L:18496943-18497063 0.00025 13_[+2]_99 chr3L:15597171-15597291 0.00025 64_[+2]_48 chr3R:19060387-19060507 0.00025 84_[+2]_28 chr3L:20494043-20494163 0.00031 1_[+2]_111 chr3R:14300082-14300202 0.00031 95_[+2]_17 chr2L:16523262-16523382 0.00031 58_[+2]_54 chr3L:2433452-2433572 0.00031 41_[+2]_71 chr3L:12045591-12045711 0.00031 15_[+2]_97 chr2R:17078066-17078186 0.00031 23_[+2]_89 chr2L:19998328-19998448 0.00031 47_[+2]_65 chr3L:4380488-4380608 0.00042 102_[+2]_10 chr2L:12463149-12463269 0.00042 64_[+2]_48 chr3L:17532279-17532399 0.00042 13_[+2]_99 chr2L:425606-425726 0.00042 67_[+2]_45 chrX:2653577-2653697 0.00042 81_[+2]_31 chr2R:14031237-14031357 0.00042 64_[+2]_48 chr3L:16010340-16010460 0.00042 82_[+2]_30 chr2L:10276603-10276723 0.00042 10_[+2]_102 chr2R:11232613-11232733 0.00042 6_[+2]_106 chr3L:18795555-18795675 0.00042 29_[+2]_83 chr3R:14526794-14526914 0.00042 19_[+2]_93 chr2L:16532044-16532164 0.00042 59_[+2]_53 chr3L:137056-137176 0.00042 29_[+2]_83 chr3R:18785942-18786062 0.00042 54_[+2]_58 chr3R:9550395-9550515 0.00042 60_[+2]_52 chrX:17293607-17293727 0.00046 34_[+2]_78 chr2L:4916003-4916123 0.00053 67_[+2]_45 chr2R:7885870-7885990 0.00053 2_[+2]_110 chr2L:2906272-2906392 0.00053 15_[+2]_97 chr3L:2734454-2734574 0.00053 45_[+2]_67 chr2R:16159281-16159401 0.00053 29_[+2]_83 chr3L:15495095-15495215 0.00053 4_[+2]_108 chr3L:17656764-17656884 0.00053 108_[+2]_4 chr2R:12729337-12729457 0.00061 45_[+2]_67 chr3L:5785362-5785482 0.00061 58_[+2]_54 chr2R:11946961-11947081 0.00061 75_[+2]_37 chr3L:20406426-20406546 0.00075 15_[+2]_97 chr2L:22144316-22144436 0.00075 95_[+2]_17 chrX:11823182-11823302 0.00075 67_[+2]_45 chr2R:14906337-14906457 0.00075 23_[+2]_89 chr2L:7994708-7994828 0.00075 6_[+2]_106 chr2R:10485620-10485740 0.00075 56_[+2]_56 chr2R:9269523-9269643 0.00075 78_[+2]_34 chr2R:19683238-19683358 0.00075 77_[+2]_35 chr3R:26539258-26539378 0.00075 23_[+2]_89 chr2L:8285338-8285458 0.00075 34_[+2]_78 chr2L:12049233-12049353 0.00075 73_[+2]_39 chr2L:7495109-7495229 0.00075 75_[+2]_37 chrX:3024666-3024786 0.00091 97_[+2]_15 chr3R:8964116-8964236 0.00091 2_[+2]_110 chr2L:9614173-9614293 0.00091 75_[+2]_37 chr3R:28674818-28674938 0.00091 31_[+2]_81 chr2L:7966167-7966287 0.00096 14_[+2]_98 chr2R:10212472-10212592 0.00096 62_[+2]_50 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYK MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TGTTTGYK width=8 seqs=107 chr2R:19413318-19413438 ( 70) TGTTTGCT 1 chr2L:9775370-9775490 ( 74) TGTTTGCG 1 chr2R:22539998-22540118 ( 66) TGTTTGCG 1 chr3R:10521309-10521429 ( 86) TGTTTGCT 1 chr3L:16056357-16056477 ( 48) TGTTTGCT 1 chr2L:9497376-9497496 ( 66) TGTTTGCT 1 chr3R:23947146-23947266 ( 50) TGTTTGCG 1 chr3L:19073275-19073395 ( 8) TGTTTGCT 1 chr2L:3397758-3397878 ( 10) TGTTTGCT 1 chrX:13108534-13108654 ( 22) TGTTTGCT 1 chr2L:7158931-7159051 ( 102) TGTTTGCT 1 chr3L:4311438-4311558 ( 24) TGTTTGCT 1 chr2L:21037855-21037975 ( 42) TGTTTGCC 1 chr3L:8835018-8835138 ( 88) TGTTTGCC 1 chr3R:15983671-15983791 ( 35) TGTTTGCC 1 chr3L:16431182-16431302 ( 97) TGTTTGCC 1 chr3R:26908885-26909005 ( 74) TGTTTGTT 1 chr3L:16640659-16640779 ( 3) TGTTTGTG 1 chr2R:13305662-13305782 ( 64) TGTTTGTG 1 chr2L:8938132-8938252 ( 37) TGTTTGTT 1 chr3L:8925811-8925931 ( 67) TGTTTGTT 1 chr3R:15677749-15677869 ( 39) TGTTTGTT 1 chr3L:4615205-4615325 ( 24) TGTTTGTT 1 chrX:4457978-4458098 ( 110) TGTTTGTT 1 chr3L:14354663-14354783 ( 27) TGTTTGTT 1 chr2R:11062384-11062504 ( 42) TGTTTGTT 1 chr3L:4220787-4220907 ( 38) TGTTTGTT 1 chr3R:23181115-23181235 ( 64) TGTTTGTT 1 chr3L:16429572-16429692 ( 62) TGTTTGTT 1 chr2R:22387693-22387813 ( 96) TGTTTGTC 1 chr3R:24293292-24293412 ( 89) TGTTTGTC 1 chr3R:19467655-19467775 ( 10) TGTTTGTC 1 chr2L:14307688-14307808 ( 48) TGTTTGTC 1 chr3L:18272376-18272496 ( 108) TGTGTGCT 1 chr2R:23740377-23740497 ( 100) TGTGTGCT 1 chr3R:19182994-19183114 ( 95) TGTGTGCG 1 chr2R:24293589-24293709 ( 3) TGTTTGCA 1 chr3L:14622546-14622666 ( 66) TGTTTGCA 1 chr2L:7215824-7215944 ( 78) TGTTTGCA 1 chr3R:22573748-22573868 ( 6) TGTTTGCA 1 chr3L:1169734-1169854 ( 26) TATTTGCG 1 chr2L:3228857-3228977 ( 41) TGTGTGCC 1 chr3L:14274809-14274929 ( 18) TATTTGCT 1 chr2R:18877792-18877912 ( 10) TATTTGCT 1 chr3R:5059487-5059607 ( 49) TATTTGCT 1 chrX:15495741-15495861 ( 1) TGTGTGCC 1 chr3L:20915264-20915384 ( 41) TATTTGCG 1 chr2R:13532008-13532128 ( 30) TATTTGCG 1 chr3R:16069431-16069551 ( 48) TGTGTGTT 1 chr3L:12668131-12668251 ( 87) TGTGTGTT 1 chr3R:9048819-9048939 ( 38) TGTGTGTG 1 chr3L:7996515-7996635 ( 3) TGTGTGTG 1 chr2R:18664376-18664496 ( 30) TGTGTGTG 1 chr2L:18496943-18497063 ( 14) TGTGTGTT 1 chr3L:15597171-15597291 ( 65) TGTGTGTG 1 chr3R:19060387-19060507 ( 85) TGTGTGTG 1 chr3L:20494043-20494163 ( 2) TGTTTGTA 1 chr3R:14300082-14300202 ( 96) TATTTGCC 1 chr2L:16523262-16523382 ( 59) TATTTGCC 1 chr3L:2433452-2433572 ( 42) TATTTGCC 1 chr3L:12045591-12045711 ( 16) TATTTGCC 1 chr2R:17078066-17078186 ( 24) TGTTTGTA 1 chr2L:19998328-19998448 ( 48) TATTTGCC 1 chr3L:4380488-4380608 ( 103) TATTTGTG 1 chr2L:12463149-12463269 ( 65) TATTTGTG 1 chr3L:17532279-17532399 ( 14) TGTGTGTC 1 chr2L:425606-425726 ( 68) TATTTGTT 1 chrX:2653577-2653697 ( 82) TATTTGTT 1 chr2R:14031237-14031357 ( 65) TATTTGTG 1 chr3L:16010340-16010460 ( 83) TATTTGTT 1 chr2L:10276603-10276723 ( 11) TATTTGTT 1 chr2R:11232613-11232733 ( 7) TATTTGTT 1 chr3L:18795555-18795675 ( 30) TATTTGTG 1 chr3R:14526794-14526914 ( 20) TATTTGTG 1 chr2L:16532044-16532164 ( 60) TATTTGTT 1 chr3L:137056-137176 ( 30) TATTTGTG 1 chr3R:18785942-18786062 ( 55) TATTTGTG 1 chr3R:9550395-9550515 ( 61) TATTTGTG 1 chrX:17293607-17293727 ( 35) TATTTGTC 1 chr2L:4916003-4916123 ( 68) TGTTTACT 1 chr2R:7885870-7885990 ( 3) TGTTTACT 1 chr2L:2906272-2906392 ( 16) TGTTTACG 1 chr3L:2734454-2734574 ( 46) TGTTTACT 1 chr2R:16159281-16159401 ( 30) TGTTTACT 1 chr3L:15495095-15495215 ( 5) TGTTTACG 1 chr3L:17656764-17656884 ( 109) TGTTTACG 1 chr2R:12729337-12729457 ( 46) TATTTGCA 1 chr3L:5785362-5785482 ( 59) TATTTGCA 1 chr2R:11946961-11947081 ( 76) TATTTGCA 1 chr3L:20406426-20406546 ( 16) TGTTTATT 1 chr2L:22144316-22144436 ( 96) TGTGTGTA 1 chrX:11823182-11823302 ( 68) TGTTTATT 1 chr2R:14906337-14906457 ( 24) TGTGTGTA 1 chr2L:7994708-7994828 ( 7) TATGTGCC 1 chr2R:10485620-10485740 ( 57) TGTTTATT 1 chr2R:9269523-9269643 ( 79) TGTTTATT 1 chr2R:19683238-19683358 ( 78) TGTTTATT 1 chr3R:26539258-26539378 ( 24) TGTTTATT 1 chr2L:8285338-8285458 ( 35) TGTTTATT 1 chr2L:12049233-12049353 ( 74) TGTTTATT 1 chr2L:7495109-7495229 ( 76) TGTTTATG 1 chrX:3024666-3024786 ( 98) TATTTGTA 1 chr3R:8964116-8964236 ( 3) TATTTGTA 1 chr2L:9614173-9614293 ( 76) TATTTGTA 1 chr3R:28674818-28674938 ( 32) TGTTTATC 1 chr2L:7966167-7966287 ( 15) TGTGTACT 1 chr2R:10212472-10212592 ( 63) TGTGTACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYK MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.68829 E= 3.9e-012 -1339 -1339 -1339 162 -6 -1339 194 -1339 -1339 -1339 -1339 162 -1339 -1339 -2 134 -1339 -1339 -1339 162 -86 -1339 219 -1339 -1339 140 -1339 74 -130 3 43 47 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYK MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 107 E= 3.9e-012 0.000000 0.000000 0.000000 1.000000 0.308411 0.000000 0.691589 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.177570 0.822430 0.000000 0.000000 0.000000 1.000000 0.177570 0.000000 0.822430 0.000000 0.000000 0.457944 0.000000 0.542056 0.130841 0.177570 0.242991 0.448598 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TGTTTGYK MEME-2 regular expression -------------------------------------------------------------------------------- T[GA]TTTG[TC][TG] -------------------------------------------------------------------------------- Time 14.05 secs. ******************************************************************************** ******************************************************************************** MOTIF GGSGGYGG MEME-3 width = 8 sites = 23 llr = 224 E-value = 4.8e-004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGSGGYGG MEME-3 Description -------------------------------------------------------------------------------- Simplified A :1:::::: pos.-specific C ::6::4:1 probability G a94991a9 matrix T ::::15:: bits 2.5 * 2.3 * * 2.0 * ** 1.8 ** ** ** Relative 1.5 ** ** ** Entropy 1.3 ***** ** (14.0 bits) 1.0 ***** ** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GGCGGTGG consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGYGG MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:19370222-19370342 38 1.03e-06 TGAAAAGGGC GGCGGCGG GGTGACGACA chr3R:29480048-29480168 27 2.95e-06 TAGAGTATGT GGCGGTGG AATTTCTTAT chr3L:19073275-19073395 67 2.95e-06 CAGTGTGTGC GGCGGTGG GTAAACGACG chr3R:16069431-16069551 4 4.01e-06 agc gggggcgg tacagcggat chr2L:16523262-16523382 91 4.01e-06 CCACCACCGC GGGGGCGG GTAGTGGGTA chrX:10115659-10115779 7 4.01e-06 AGGGCA GGGGGCGG GGATTTTCAG chr3R:26908885-26909005 20 6.00e-06 AGGGCGGACA GGGGGTGG TGATATGCTA chr2L:18717484-18717604 101 6.00e-06 ACACCTCCAA GGGGGTGG TGGGGGGAAG chr3L:2004973-2005093 5 6.00e-06 GAAG GGGGGTGG AGCAGGAGAG chr2L:17388180-17388300 13 7.06e-06 AGCATCGTCT GGCGGGGG ATTACTCCAT chr2R:14031237-14031357 9 8.16e-06 CGGGGGAG GGGGGGGG GTAAGACAGG chr2L:21037855-21037975 22 9.16e-06 CACCAGCAGT GGCGGCGC TTGTTTGGTT chr3R:11338427-11338547 103 1.10e-05 CCAGCCGTGT GGCGGTGC CTTAAAAATA chr2L:4916003-4916123 112 2.84e-05 TGTTGTTACT GGCGTTGG C chr2L:22144316-22144436 2 2.84e-05 A GGCGTTGG TTTCTAGATG chr2L:1913181-1913301 80 2.84e-05 AATAAAGTGA GACGGTGG ATGCGAAATA chr3L:4380488-4380608 1 3.41e-05 . gagGGCGG CTGGAAATGG chr3L:10741315-10741435 40 3.41e-05 GTTGTTGCAA GCCGGTGG TTGGCCTGTG chrX:5989464-5989584 8 4.06e-05 CCACAGT GGCGGTCG AAATAGGAGT chr2R:16845407-16845527 31 4.06e-05 AAAACCTAAA GGTGGTGG GGCACAAAAA chr2R:12729337-12729457 87 5.43e-05 ATGTGTATAT GGCTGCGG CTTTTAGCTT chrX:15495741-15495861 112 5.43e-05 ATCTGCTTAA GGCAGCGG T chr3L:14354663-14354783 65 7.52e-05 GGGGGTTTTT GGGGACGG AGCTTATGTG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGYGG MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:19370222-19370342 1e-06 37_[+3]_75 chr3R:29480048-29480168 2.9e-06 26_[+3]_86 chr3L:19073275-19073395 2.9e-06 66_[+3]_46 chr3R:16069431-16069551 4e-06 3_[+3]_109 chr2L:16523262-16523382 4e-06 90_[+3]_22 chrX:10115659-10115779 4e-06 6_[+3]_106 chr3R:26908885-26909005 6e-06 19_[+3]_93 chr2L:18717484-18717604 6e-06 100_[+3]_12 chr3L:2004973-2005093 6e-06 4_[+3]_108 chr2L:17388180-17388300 7.1e-06 12_[+3]_100 chr2R:14031237-14031357 8.2e-06 8_[+3]_104 chr2L:21037855-21037975 9.2e-06 21_[+3]_91 chr3R:11338427-11338547 1.1e-05 102_[+3]_10 chr2L:4916003-4916123 2.8e-05 111_[+3]_1 chr2L:22144316-22144436 2.8e-05 1_[+3]_111 chr2L:1913181-1913301 2.8e-05 79_[+3]_33 chr3L:4380488-4380608 3.4e-05 [+3]_112 chr3L:10741315-10741435 3.4e-05 39_[+3]_73 chrX:5989464-5989584 4.1e-05 7_[+3]_105 chr2R:16845407-16845527 4.1e-05 30_[+3]_82 chr2R:12729337-12729457 5.4e-05 86_[+3]_26 chrX:15495741-15495861 5.4e-05 111_[+3]_1 chr3L:14354663-14354783 7.5e-05 64_[+3]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGYGG MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGSGGYGG width=8 seqs=23 chr2L:19370222-19370342 ( 38) GGCGGCGG 1 chr3R:29480048-29480168 ( 27) GGCGGTGG 1 chr3L:19073275-19073395 ( 67) GGCGGTGG 1 chr3R:16069431-16069551 ( 4) GGGGGCGG 1 chr2L:16523262-16523382 ( 91) GGGGGCGG 1 chrX:10115659-10115779 ( 7) GGGGGCGG 1 chr3R:26908885-26909005 ( 20) GGGGGTGG 1 chr2L:18717484-18717604 ( 101) GGGGGTGG 1 chr3L:2004973-2005093 ( 5) GGGGGTGG 1 chr2L:17388180-17388300 ( 13) GGCGGGGG 1 chr2R:14031237-14031357 ( 9) GGGGGGGG 1 chr2L:21037855-21037975 ( 22) GGCGGCGC 1 chr3R:11338427-11338547 ( 103) GGCGGTGC 1 chr2L:4916003-4916123 ( 112) GGCGTTGG 1 chr2L:22144316-22144436 ( 2) GGCGTTGG 1 chr2L:1913181-1913301 ( 80) GACGGTGG 1 chr3L:4380488-4380608 ( 1) GAGGGCGG 1 chr3L:10741315-10741435 ( 40) GCCGGTGG 1 chrX:5989464-5989584 ( 8) GGCGGTCG 1 chr2R:16845407-16845527 ( 31) GGTGGTGG 1 chr2R:12729337-12729457 ( 87) GGCTGCGG 1 chrX:15495741-15495861 ( 112) GGCAGCGG 1 chr3L:14354663-14354783 ( 65) GGGGACGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGYGG MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.326 E= 4.8e-004 -1117 -1117 247 -1117 -189 -200 227 -1117 -1117 170 112 -290 -289 -1117 234 -290 -289 -1117 227 -190 -1117 117 -105 69 -1117 -200 241 -1117 -1117 -100 234 -1117 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGYGG MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 4.8e-004 0.000000 0.000000 1.000000 0.000000 0.086957 0.043478 0.869565 0.000000 0.000000 0.565217 0.391304 0.043478 0.043478 0.000000 0.913043 0.043478 0.043478 0.000000 0.869565 0.086957 0.000000 0.391304 0.086957 0.521739 0.000000 0.043478 0.956522 0.000000 0.000000 0.086957 0.913043 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGSGGYGG MEME-3 regular expression -------------------------------------------------------------------------------- GG[CG]GG[TC]GG -------------------------------------------------------------------------------- Time 20.11 secs. ******************************************************************************** ******************************************************************************** MOTIF GCCRGCAC MEME-4 width = 8 sites = 16 llr = 159 E-value = 1.7e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCCRGCAC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::6::9: pos.-specific C 199:2a:8 probability G 91148:12 matrix T :::::::: bits 2.5 * 2.3 * 2.0 *** * 1.8 *** ** * Relative 1.5 *** ** * Entropy 1.3 *** **** (14.4 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCCAGCAC consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGCAC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2R:7885870-7885990 111 1.72e-06 AGATGCGATC GCCGGCAC GT chr3L:17113352-17113472 90 4.80e-06 CAGCTTTTTT GCCAGCAC ATTAAATTAA chr2R:17272612-17272732 10 4.80e-06 AATTCAGAT GCCAGCAC AGCTGCCTTT chr3L:17896110-17896230 64 4.80e-06 GTCGTCCACA GCCAGCAC CTTTGTTTCA chr2R:14109823-14109943 106 6.46e-06 GTTTACCTTG GCCGCCAC TCGACTG chr2R:18877792-18877912 89 9.44e-06 CACACAAACA GCCACCAC GGAAGTAGAG chrX:4936607-4936727 30 1.12e-05 GAAGTTCGAT GCCGGCAG GGAATGAATG chr3R:26539258-26539378 89 1.44e-05 AAGTAAACAA GCCAGCAG CAATCGGACA chr2L:868410-868530 57 1.96e-05 CTCTACACTA GCGGGCAC CGCAATAGAA chr2R:14915046-14915166 25 1.96e-05 AATCAATGCA GCGGGCAC ACAGAGAAAA chr3L:16431182-16431302 38 1.96e-05 TCATGCAAAT CCCGGCAC AAAGCCgttt chr2R:8734627-8734747 29 2.90e-05 TTATTAAATT CCCAGCAC TGACTGAAGA chr2R:9060148-9060268 98 2.90e-05 ACAGTAGTCT GGCAGCAC CGCCTCTTCA chrX:4686854-4686974 73 2.90e-05 GTATAATGCT GGCAGCAC ACCAATCGAT chr4:446114-446234 20 3.17e-05 CAATGGTTGC GCCAGCGC CTGAAGAAAA chr2L:21037855-21037975 10 3.65e-05 AAGTTTTTT GCCACCAG CAGTGGCGGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGCAC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2R:7885870-7885990 1.7e-06 110_[+4]_2 chr3L:17113352-17113472 4.8e-06 89_[+4]_23 chr2R:17272612-17272732 4.8e-06 9_[+4]_103 chr3L:17896110-17896230 4.8e-06 63_[+4]_49 chr2R:14109823-14109943 6.5e-06 105_[+4]_7 chr2R:18877792-18877912 9.4e-06 88_[+4]_24 chrX:4936607-4936727 1.1e-05 29_[+4]_83 chr3R:26539258-26539378 1.4e-05 88_[+4]_24 chr2L:868410-868530 2e-05 56_[+4]_56 chr2R:14915046-14915166 2e-05 24_[+4]_88 chr3L:16431182-16431302 2e-05 37_[+4]_75 chr2R:8734627-8734747 2.9e-05 28_[+4]_84 chr2R:9060148-9060268 2.9e-05 97_[+4]_15 chrX:4686854-4686974 2.9e-05 72_[+4]_40 chr4:446114-446234 3.2e-05 19_[+4]_93 chr2L:21037855-21037975 3.6e-05 9_[+4]_103 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGCAC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCCRGCAC width=8 seqs=16 chr2R:7885870-7885990 ( 111) GCCGGCAC 1 chr3L:17113352-17113472 ( 90) GCCAGCAC 1 chr2R:17272612-17272732 ( 10) GCCAGCAC 1 chr3L:17896110-17896230 ( 64) GCCAGCAC 1 chr2R:14109823-14109943 ( 106) GCCGCCAC 1 chr2R:18877792-18877912 ( 89) GCCACCAC 1 chrX:4936607-4936727 ( 30) GCCGGCAG 1 chr3R:26539258-26539378 ( 89) GCCAGCAG 1 chr2L:868410-868530 ( 57) GCGGGCAC 1 chr2R:14915046-14915166 ( 25) GCGGGCAC 1 chr3L:16431182-16431302 ( 38) CCCGGCAC 1 chr2R:8734627-8734747 ( 29) CCCAGCAC 1 chr2R:9060148-9060268 ( 98) GGCAGCAC 1 chrX:4686854-4686974 ( 73) GGCAGCAC 1 chr4:446114-446234 ( 20) GCCAGCGC 1 chr2L:21037855-21037975 ( 10) GCCACCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGCAC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 10.7851 E= 1.7e+001 -1064 -47 228 -1064 -1064 233 -52 -1064 -1064 233 -52 -1064 96 -1064 106 -1064 -1064 11 217 -1064 -1064 253 -1064 -1064 154 -1064 -152 -1064 -1064 223 6 -1064 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGCAC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 1.7e+001 0.000000 0.125000 0.875000 0.000000 0.000000 0.875000 0.125000 0.000000 0.000000 0.875000 0.125000 0.000000 0.625000 0.000000 0.375000 0.000000 0.000000 0.187500 0.812500 0.000000 0.000000 1.000000 0.000000 0.000000 0.937500 0.000000 0.062500 0.000000 0.000000 0.812500 0.187500 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCCRGCAC MEME-4 regular expression -------------------------------------------------------------------------------- GCC[AG]GCAC -------------------------------------------------------------------------------- Time 26.10 secs. ******************************************************************************** ******************************************************************************** MOTIF GCAGCGCG MEME-5 width = 8 sites = 4 llr = 51 E-value = 5.9e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCAGCGCG MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::a::::: pos.-specific C :a::a:8: probability G a::a:a3a matrix T :::::::: bits 2.5 ** *** * 2.3 ** *** * 2.0 ** *** * 1.8 ** ***** Relative 1.5 ******** Entropy 1.3 ******** (18.3 bits) 1.0 ******** 0.8 ******** 0.5 ******** 0.3 ******** 0.0 -------- Multilevel GCAGCGCG consensus G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCGCG MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16548413-16548533 12 1.78e-06 TCAAAGCAAA GCAGCGCG AGTAACTATA chr2R:14487726-14487846 39 1.78e-06 CCAGCTGCTT GCAGCGCG CGTGTCGGTT chr3L:11273608-11273728 6 1.78e-06 TAAAA GCAGCGCG TTAAAAGCAG chr2R:24745983-24746103 14 3.62e-06 TCGAGTGGCT GCAGCGGG GTTCCGGGGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCGCG MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16548413-16548533 1.8e-06 11_[+5]_101 chr2R:14487726-14487846 1.8e-06 38_[+5]_74 chr3L:11273608-11273728 1.8e-06 5_[+5]_107 chr2R:24745983-24746103 3.6e-06 13_[+5]_99 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCGCG MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCAGCGCG width=8 seqs=4 chr2L:16548413-16548533 ( 12) GCAGCGCG 1 chr2R:14487726-14487846 ( 39) GCAGCGCG 1 chr3L:11273608-11273728 ( 6) GCAGCGCG 1 chr2R:24745983-24746103 ( 14) GCAGCGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCGCG MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.7858 E= 5.9e+003 -865 -865 247 -865 -865 252 -865 -865 163 -865 -865 -865 -865 -865 247 -865 -865 252 -865 -865 -865 -865 247 -865 -865 211 47 -865 -865 -865 247 -865 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCGCG MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 5.9e+003 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.750000 0.250000 0.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCAGCGCG MEME-5 regular expression -------------------------------------------------------------------------------- GCAGCG[CG]G -------------------------------------------------------------------------------- Time 32.03 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:4686854-4686974 1.42e-03 72_[+4(2.90e-05)]_40 chr3L:2493907-2494027 3.66e-01 120 chr2L:21091112-21091232 2.11e-01 120 chr2L:5338762-5338882 6.64e-01 120 chr3L:16429572-16429692 5.67e-03 94_[+1(1.89e-05)]_18 chr3L:16431182-16431302 3.42e-03 37_[+4(1.96e-05)]_51_[+2(4.21e-05)]_\ 16 chr3R:15926063-15926183 1.07e-01 53_[+1(2.91e-05)]_59 chr2L:7495109-7495229 5.72e-01 120 chr3L:3755807-3755927 2.00e-02 36_[+1(1.89e-05)]_76 chr2L:12049233-12049353 3.53e-01 120 chr2L:14307688-14307808 1.18e-01 120 chr3L:16486602-16486722 6.90e-01 120 chr2R:11946961-11947081 2.12e-02 30_[+1(6.42e-05)]_82 chrX:8128285-8128405 2.02e-03 32_[+1(2.91e-05)]_80 chr3R:14436544-14436664 5.16e-01 120 chr2L:470018-470138 2.35e-01 120 chr2L:19998328-19998448 1.02e-02 89_[+1(6.42e-05)]_23 chr3L:5785362-5785482 2.44e-03 120 chrX:13645186-13645306 2.39e-01 120 chr3R:19467655-19467775 7.04e-03 120 chr2R:22666776-22666896 4.86e-01 120 chr3R:23181115-23181235 2.96e-02 41_[+1(6.42e-05)]_71 chr2R:13532008-13532128 2.96e-03 120 chr3R:9550395-9550515 5.19e-02 120 chr2L:10497530-10497650 3.85e-02 120 chr2L:8285338-8285458 1.62e-01 120 chr3R:18785942-18786062 7.03e-02 120 chr3L:815368-815488 8.91e-01 120 chr3L:137056-137176 1.67e-01 120 chr2L:16532044-16532164 1.13e-01 120 chr3R:19182994-19183114 1.56e-01 120 chrX:16089741-16089861 2.16e-02 33_[+1(1.89e-05)]_79 chr3R:19060387-19060507 1.85e-03 120 chr3L:17656764-17656884 8.52e-03 120 chr3R:22635039-22635159 8.44e-01 120 chr2L:9505837-9505957 4.14e-01 120 chr3R:14002228-14002348 7.49e-01 120 chr2L:21971128-21971248 4.18e-01 120 chr3R:14526794-14526914 1.06e-02 120 chr3R:9892710-9892830 8.51e-02 103_[+1(1.89e-05)]_9 chr2R:18148522-18148642 3.84e-01 120 chr3R:21271370-21271490 2.34e-01 120 chr3R:6401060-6401180 5.95e-02 120 chr3L:15495095-15495215 1.33e-02 22_[+1(1.89e-05)]_90 chr2L:1913181-1913301 1.30e-02 79_[+3(2.84e-05)]_33 chr3L:14673569-14673689 4.84e-01 120 chrX:15893965-15894085 5.37e-04 23_[+3(8.16e-06)]_[+3(1.77e-05)]_81 chr2R:17078066-17078186 6.90e-01 120 chr3L:15597171-15597291 1.65e-01 120 chr3R:28674818-28674938 5.26e-01 120 chr2R:22542846-22542966 6.37e-01 120 chr2R:7756389-7756509 3.24e-01 120 chrX:19847731-19847851 6.10e-02 120 chr3L:4311438-4311558 2.24e-01 23_[+2(3.13e-05)]_89 chr3L:20915264-20915384 1.87e-03 49_[+1(1.89e-05)]_63 chr3L:10741315-10741435 1.73e-03 39_[+3(3.41e-05)]_49_[+5(1.40e-05)]_\ 16 chr3L:4220787-4220907 2.11e-02 120 chrX:15495741-15495861 5.02e-06 111_[+3(5.43e-05)]_1 chr2L:7158931-7159051 3.49e-03 28_[+1(1.89e-05)]_65_[+2(3.13e-05)]_\ 11 chr2R:23740377-23740497 3.85e-02 120 chr3R:13820550-13820670 3.75e-02 84_[+1(2.91e-05)]_28 chrX:11841806-11841926 6.89e-01 120 chr3L:483960-484080 5.74e-03 85_[+1(1.89e-05)]_27 chr2L:12530098-12530218 5.26e-01 120 chr2R:16845407-16845527 3.87e-02 30_[+3(4.06e-05)]_82 chr3R:22573748-22573868 2.84e-01 120 chr2L:18496943-18497063 1.96e-02 120 chr2L:9614173-9614293 3.33e-01 120 chr3R:26539258-26539378 4.39e-06 38_[+4(7.10e-05)]_34_[+1(6.42e-05)]_\ [+4(1.44e-05)]_24 chr3R:5059487-5059607 2.56e-02 120 chr3L:18795555-18795675 7.27e-01 120 chr2R:11232613-11232733 9.38e-02 52_[+1(6.42e-05)]_60 chr2R:11062384-11062504 3.42e-02 120 chr2L:10276603-10276723 1.62e-01 120 chr3L:14354663-14354783 2.61e-04 64_[+3(7.52e-05)]_48 chr2L:3506852-3506972 6.69e-01 120 chr3R:20950324-20950444 1.75e-01 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