******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/Antp.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr2L:1071080-1071200 1.0000 120 chr3R:26859325-26859445 1.0000 120 chrX:16105834-16105954 1.0000 120 chr3L:22207252-22207372 1.0000 120 chr3R:29699376-29699496 1.0000 120 chr2L:23332506-23332626 1.0000 120 chr3L:8853020-8853140 1.0000 120 chr3R:15644897-15645017 1.0000 120 chr2L:5001026-5001146 1.0000 120 chrX:5866258-5866378 1.0000 120 chrX:12075700-12075820 1.0000 120 chr2R:22450465-22450585 1.0000 120 chr2R:6983954-6984074 1.0000 120 chrX:6179556-6179676 1.0000 120 chrX:8417062-8417182 1.0000 120 chr3R:22447409-22447529 1.0000 120 chrX:2036954-2037074 1.0000 120 chrX:19665966-19666086 1.0000 120 chrX:5889148-5889268 1.0000 120 chr2R:10013324-10013444 1.0000 120 chr2R:24292823-24292943 1.0000 120 chrX:2708299-2708419 1.0000 120 chr2L:1316564-1316684 1.0000 120 chr3R:18315387-18315507 1.0000 120 chrX:948256-948376 1.0000 120 chr2L:2528232-2528352 1.0000 120 chr2L:8437274-8437394 1.0000 120 chr3R:30729148-30729268 1.0000 120 chr2R:19971475-19971595 1.0000 120 chr2L:4292672-4292792 1.0000 120 chrX:8542850-8542970 1.0000 120 chr2L:1837862-1837982 1.0000 120 chrX:5737160-5737280 1.0000 120 chr2R:22197215-22197335 1.0000 120 chrX:8720372-8720492 1.0000 120 chr3R:6869485-6869605 1.0000 120 chrX:16650559-16650679 1.0000 120 chrX:7539301-7539421 1.0000 120 chrX:10473754-10473874 1.0000 120 chr2L:19140409-19140529 1.0000 120 chr2R:13507056-13507176 1.0000 120 chr2L:20948775-20948895 1.0000 120 chr2R:16672999-16673119 1.0000 120 chrX:7488376-7488496 1.0000 120 chr3R:8524430-8524550 1.0000 120 chrX:11846496-11846616 1.0000 120 chr3L:4353897-4354017 1.0000 120 chr3L:11408765-11408885 1.0000 120 chrX:11283700-11283820 1.0000 120 chr2R:9941594-9941714 1.0000 120 chr3R:23941688-23941808 1.0000 120 chrX:17465615-17465735 1.0000 120 chrX:842053-842173 1.0000 120 chr3R:17777032-17777152 1.0000 120 chr2R:23202122-23202242 1.0000 120 chr2R:20641522-20641642 1.0000 120 chrX:6615572-6615692 1.0000 120 chr3L:22871073-22871193 1.0000 120 chr3R:13469316-13469436 1.0000 120 chr3R:28118230-28118350 1.0000 120 chr2L:936993-937113 1.0000 120 chrX:8491937-8492057 1.0000 120 chrX:11391689-11391809 1.0000 120 chrX:8835279-8835399 1.0000 120 chr2L:6956884-6957004 1.0000 120 chr2L:10437462-10437582 1.0000 120 chrX:18494267-18494387 1.0000 120 chr2R:12870821-12870941 1.0000 120 chrX:8601321-8601441 1.0000 120 chrX:9220561-9220681 1.0000 120 chr2L:18150447-18150567 1.0000 120 chrX:13253219-13253339 1.0000 120 chr3L:2894842-2894962 1.0000 120 chr2L:9911894-9912014 1.0000 120 chrX:10184801-10184921 1.0000 120 chr2L:19233451-19233571 1.0000 120 chr2L:16816082-16816202 1.0000 120 chr2R:22379351-22379471 1.0000 120 chr2R:18812006-18812126 1.0000 120 chrX:17229876-17229996 1.0000 120 chr2R:7063805-7063925 1.0000 120 chr3L:20389079-20389199 1.0000 120 chr3L:10862067-10862187 1.0000 120 chr3L:3785889-3786009 1.0000 120 chr3R:31060367-31060487 1.0000 120 chr3L:2913450-2913570 1.0000 120 chrX:11355740-11355860 1.0000 120 chrX:19748715-19748835 1.0000 120 chrX:10825470-10825590 1.0000 120 chr3R:14569538-14569658 1.0000 120 chr2R:21910034-21910154 1.0000 120 chr3R:24585504-24585624 1.0000 120 chrX:10067661-10067781 1.0000 120 chr3L:1880886-1881006 1.0000 120 chr3R:31805432-31805552 1.0000 120 chr3L:13015341-13015461 1.0000 120 chr3R:10100695-10100815 1.0000 120 chrX:18239431-18239551 1.0000 120 chrX:11341042-11341162 1.0000 120 chr3L:1534269-1534389 1.0000 120 chr2L:5771296-5771416 1.0000 120 chrX:4117497-4117617 1.0000 120 chrX:4498380-4498500 1.0000 120 chrX:18366675-18366795 1.0000 120 chrX:4113743-4113863 1.0000 120 chr2L:8894350-8894470 1.0000 120 chr3R:26056501-26056621 1.0000 120 chr3R:28857409-28857529 1.0000 120 chr2R:16097163-16097283 1.0000 120 chrX:6091208-6091328 1.0000 120 chr3L:3970567-3970687 1.0000 120 chr2R:20590754-20590874 1.0000 120 chr2L:17384605-17384725 1.0000 120 chr3L:7634821-7634941 1.0000 120 chr3L:22277363-22277483 1.0000 120 chr3R:30789560-30789680 1.0000 120 chr3R:10605210-10605330 1.0000 120 chr3R:6850033-6850153 1.0000 120 chr3R:5282829-5282949 1.0000 120 chrX:618708-618828 1.0000 120 chr3R:26799012-26799132 1.0000 120 chr3L:14029111-14029231 1.0000 120 chr2R:6494358-6494478 1.0000 120 chrX:4649882-4650002 1.0000 120 chrX:12221695-12221815 1.0000 120 chr2R:20994801-20994921 1.0000 120 chrX:10325972-10326092 1.0000 120 chr2L:11203746-11203866 1.0000 120 chrX:4262836-4262956 1.0000 120 chrX:6663240-6663360 1.0000 120 chr2L:14619760-14619880 1.0000 120 chrX:10463245-10463365 1.0000 120 chr2R:24411797-24411917 1.0000 120 chrX:18837189-18837309 1.0000 120 chr3L:16544369-16544489 1.0000 120 chrX:2720279-2720399 1.0000 120 chr2L:14141330-14141450 1.0000 120 chr2L:901468-901588 1.0000 120 chrX:8677565-8677685 1.0000 120 chr2R:19310935-19311055 1.0000 120 chr2R:19127963-19128083 1.0000 120 chr3L:627875-627995 1.0000 120 chr3R:30815025-30815145 1.0000 120 chr3L:8419142-8419262 1.0000 120 chr3R:15320503-15320623 1.0000 120 chr3L:3320165-3320285 1.0000 120 chrX:6110000-6110120 1.0000 120 chr2R:17160979-17161099 1.0000 120 chr3R:30076183-30076303 1.0000 120 chr3L:9614085-9614205 1.0000 120 chr3R:16655787-16655907 1.0000 120 chr3L:15234631-15234751 1.0000 120 chr2R:7246723-7246843 1.0000 120 chr2R:20906671-20906791 1.0000 120 chr2R:13008232-13008352 1.0000 120 chr3L:1463772-1463892 1.0000 120 chr2L:21260962-21261082 1.0000 120 chr3R:16996252-16996372 1.0000 120 chrX:19495368-19495488 1.0000 120 chrX:11715451-11715571 1.0000 120 chr2L:3598619-3598739 1.0000 120 chrX:13822163-13822283 1.0000 120 chrX:19964415-19964535 1.0000 120 chr2L:5907009-5907129 1.0000 120 chr3R:21118886-21119006 1.0000 120 chr2L:8611015-8611135 1.0000 120 chr3L:21821839-21821959 1.0000 120 chr3R:26567014-26567134 1.0000 120 chrX:14602674-14602794 1.0000 120 chr3L:16768440-16768560 1.0000 120 chr3R:5120939-5121059 1.0000 120 chrX:5968221-5968341 1.0000 120 chr3R:8744339-8744459 1.0000 120 chr3R:27440666-27440786 1.0000 120 chr3R:30501271-30501391 1.0000 120 chrX:11154015-11154135 1.0000 120 chrX:7703126-7703246 1.0000 120 chrX:3690697-3690817 1.0000 120 chr2R:21527377-21527497 1.0000 120 chr2L:2494659-2494779 1.0000 120 chr3L:18672361-18672481 1.0000 120 chr3R:8517782-8517902 1.0000 120 chr2R:22373524-22373644 1.0000 120 chr3R:11735449-11735569 1.0000 120 chr3L:20276752-20276872 1.0000 120 chr3L:6752323-6752443 1.0000 120 chr2R:11792750-11792870 1.0000 120 chr3R:22025478-22025598 1.0000 120 chrX:3714189-3714309 1.0000 120 chrX:14826108-14826228 1.0000 120 chr3R:11372796-11372916 1.0000 120 chr3L:9864291-9864411 1.0000 120 chr2R:21514458-21514578 1.0000 120 chr2R:23385750-23385870 1.0000 120 chr3R:26235177-26235297 1.0000 120 chr2L:2729989-2730109 1.0000 120 chr3R:16355528-16355648 1.0000 120 chrX:15739052-15739172 1.0000 120 chr3R:19113962-19114082 1.0000 120 chr3L:19914937-19915057 1.0000 120 chrX:4011006-4011126 1.0000 120 chr3L:13964658-13964778 1.0000 120 chr3R:26230158-26230278 1.0000 120 chr2L:14562426-14562546 1.0000 120 chrX:1880368-1880488 1.0000 120 chr3R:22664413-22664533 1.0000 120 chrX:4116949-4117069 1.0000 120 chr2L:17583111-17583231 1.0000 120 chr3L:224201-224321 1.0000 120 chr3R:10411854-10411974 1.0000 120 chrX:5923297-5923417 1.0000 120 chrX:4540726-4540846 1.0000 120 chr2L:14094777-14094897 1.0000 120 chr3R:4846935-4847055 1.0000 120 chr3R:5076388-5076508 1.0000 120 chrX:10086390-10086510 1.0000 120 chrX:7901804-7901924 1.0000 120 chr3R:5861758-5861878 1.0000 120 chr3R:10024171-10024291 1.0000 120 chr3R:21499654-21499774 1.0000 120 chr2R:10899098-10899218 1.0000 120 chr2L:3444964-3445084 1.0000 120 chr2R:7939101-7939221 1.0000 120 chr3L:8110312-8110432 1.0000 120 chr2L:12351103-12351223 1.0000 120 chr2R:7636652-7636772 1.0000 120 chr3L:199257-199377 1.0000 120 chr2L:7494469-7494589 1.0000 120 chrX:5671794-5671914 1.0000 120 chr3R:23157873-23157993 1.0000 120 chrX:1476998-1477118 1.0000 120 chrX:17738316-17738436 1.0000 120 chr3L:1295798-1295918 1.0000 120 chrX:5312164-5312284 1.0000 120 chrX:18774946-18775066 1.0000 120 chr3R:7000930-7001050 1.0000 120 chrX:10387758-10387878 1.0000 120 chrX:16683919-16684039 1.0000 120 chr2R:13054990-13055110 1.0000 120 chr3L:9899186-9899306 1.0000 120 chr2L:3042236-3042356 1.0000 120 chrX:7710945-7711065 1.0000 120 chrX:1083262-1083382 1.0000 120 chr3R:21850214-21850334 1.0000 120 chr3L:13917903-13918023 1.0000 120 chr2R:16551988-16552108 1.0000 120 chrX:3968840-3968960 1.0000 120 chr2R:10066622-10066742 1.0000 120 chr2L:10767841-10767961 1.0000 120 chrX:8606299-8606419 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_Antp/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/Antp.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.292 C 0.206 G 0.211 T 0.29 Background letter frequencies (from file dataset with add-one prior applied): A 0.292 C 0.206 G 0.211 T 0.29 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF CTATCGAT MEME-1 width = 8 sites = 9 llr = 98 E-value = 1.6e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 Description -------------------------------------------------------------------------------- Simplified A ::a:::a: pos.-specific C a:::a::: probability G :::::a:: matrix T :a:a:::a bits 2.3 * ** 2.0 * ** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (15.7 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CTATCGAT consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1476998-1477118 38 1.86e-05 GCGCGCAGAG CTATCGAT AAGTATCGCG chr3R:8517782-8517902 66 1.86e-05 CTCCGCCTGT CTATCGAT AACGCGATAG chr3R:27440666-27440786 41 1.86e-05 GGTACGCTAT CTATCGAT GGGAATATTG chr3R:16655787-16655907 24 1.86e-05 tcatcaatat ctatcgat atcgcagaaa chr2R:6494358-6494478 7 1.86e-05 TTGGCA CTATCGAT AGTTTTTCAG chr3L:14029111-14029231 33 1.86e-05 TTATGCGATA CTATCGAT AGTTCCAGAA chr2L:17384605-17384725 73 1.86e-05 ATAGCCGCAA CTATCGAT TGGCGCGCTG chr3L:13015341-13015461 14 1.86e-05 GTGTCAGCAG CTATCGAT AGTTGTTTCG chr2L:19233451-19233571 40 1.86e-05 AAAGTTGATA CTATCGAT GTTGTACAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1476998-1477118 1.9e-05 37_[+1]_75 chr3R:8517782-8517902 1.9e-05 65_[+1]_47 chr3R:27440666-27440786 1.9e-05 40_[+1]_72 chr3R:16655787-16655907 1.9e-05 23_[+1]_89 chr2R:6494358-6494478 1.9e-05 6_[+1]_106 chr3L:14029111-14029231 1.9e-05 32_[+1]_80 chr2L:17384605-17384725 1.9e-05 72_[+1]_40 chr3L:13015341-13015461 1.9e-05 13_[+1]_99 chr2L:19233451-19233571 1.9e-05 39_[+1]_73 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CTATCGAT width=8 seqs=9 chrX:1476998-1477118 ( 38) CTATCGAT 1 chr3R:8517782-8517902 ( 66) CTATCGAT 1 chr3R:27440666-27440786 ( 41) CTATCGAT 1 chr3R:16655787-16655907 ( 24) CTATCGAT 1 chr2R:6494358-6494478 ( 7) CTATCGAT 1 chr3L:14029111-14029231 ( 33) CTATCGAT 1 chr2L:17384605-17384725 ( 73) CTATCGAT 1 chr3L:13015341-13015461 ( 14) CTATCGAT 1 chr2L:19233451-19233571 ( 40) CTATCGAT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.7499 E= 1.6e+003 -982 228 -982 -982 -982 -982 -982 178 177 -982 -982 -982 -982 -982 -982 178 -982 228 -982 -982 -982 -982 224 -982 177 -982 -982 -982 -982 -982 -982 178 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.6e+003 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CTATCGAT MEME-1 regular expression -------------------------------------------------------------------------------- CTATCGAT -------------------------------------------------------------------------------- Time 7.42 secs. ******************************************************************************** ******************************************************************************** MOTIF SGCSCTGC MEME-2 width = 8 sites = 11 llr = 115 E-value = 8.0e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif SGCSCTGC MEME-2 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C 5:a4a::a probability G 4a:6::a: matrix T 2::::a:: bits 2.3 ** * ** 2.0 ** * ** 1.8 ** **** 1.6 ** **** Relative 1.4 ******* Entropy 1.1 ******* (15.1 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCGCTGC consensus G C sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCSCTGC MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:17738316-17738436 63 4.91e-06 AACATCGCTG CGCGCTGC GCAAATGTTT chrX:13822163-13822283 113 4.91e-06 CTACGATTTG CGCGCTGC chrX:12221695-12221815 37 4.91e-06 TTGAAGACTA CGCGCTGC AGATTTAGAT chr2L:17384605-17384725 84 4.91e-06 TATCGATTGG CGCGCTGC ACTGGAGCTG chr2R:13507056-13507176 29 9.93e-06 AACATCCCAT GGCGCTGC GTTGCCAGAC chr3L:22871073-22871193 57 1.47e-05 TGCGTTGAGC CGCCCTGC CTTTGCTGCC chr2L:2729989-2730109 10 1.96e-05 GGTACAGTG GGCCCTGC TCGGCGCGAT chr3R:10605210-10605330 59 1.96e-05 TGCGAGGGGA GGCCCTGC AGTCCGGGCG chrX:9220561-9220681 11 1.96e-05 GTGCACAGTG GGCCCTGC CTGGCAGCGA chrX:11283700-11283820 60 2.65e-05 ATTAACAATT TGCGCTGC ACAACAAAGC chr3R:8524430-8524550 75 2.65e-05 GAGCTGTGCC TGCGCTGC GGCAGGAATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCSCTGC MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:17738316-17738436 4.9e-06 62_[+2]_50 chrX:13822163-13822283 4.9e-06 112_[+2] chrX:12221695-12221815 4.9e-06 36_[+2]_76 chr2L:17384605-17384725 4.9e-06 83_[+2]_29 chr2R:13507056-13507176 9.9e-06 28_[+2]_84 chr3L:22871073-22871193 1.5e-05 56_[+2]_56 chr2L:2729989-2730109 2e-05 9_[+2]_103 chr3R:10605210-10605330 2e-05 58_[+2]_54 chrX:9220561-9220681 2e-05 10_[+2]_102 chrX:11283700-11283820 2.7e-05 59_[+2]_53 chr3R:8524430-8524550 2.7e-05 74_[+2]_38 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCSCTGC MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SGCSCTGC width=8 seqs=11 chrX:17738316-17738436 ( 63) CGCGCTGC 1 chrX:13822163-13822283 ( 113) CGCGCTGC 1 chrX:12221695-12221815 ( 37) CGCGCTGC 1 chr2L:17384605-17384725 ( 84) CGCGCTGC 1 chr2R:13507056-13507176 ( 29) GGCGCTGC 1 chr3L:22871073-22871193 ( 57) CGCCCTGC 1 chr2L:2729989-2730109 ( 10) GGCCCTGC 1 chr3R:10605210-10605330 ( 59) GGCCCTGC 1 chrX:9220561-9220681 ( 11) GGCCCTGC 1 chrX:11283700-11283820 ( 60) TGCGCTGC 1 chr3R:8524430-8524550 ( 75) TGCGCTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCSCTGC MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3527 E= 8.0e+003 -1010 114 78 -67 -1010 -1010 224 -1010 -1010 228 -1010 -1010 -1010 82 159 -1010 -1010 228 -1010 -1010 -1010 -1010 -1010 178 -1010 -1010 224 -1010 -1010 228 -1010 -1010 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCSCTGC MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 8.0e+003 0.000000 0.454545 0.363636 0.181818 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.363636 0.636364 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SGCSCTGC MEME-2 regular expression -------------------------------------------------------------------------------- [CG]GC[GC]CTGC -------------------------------------------------------------------------------- Time 13.69 secs. ******************************************************************************** ******************************************************************************** MOTIF GGCGGCGC MEME-3 width = 8 sites = 18 llr = 172 E-value = 1.3e+003 ******************************************************************************** -------------------------------------------------------------------------------- Motif GGCGGCGC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :2:11:11 pos.-specific C ::7::a:8 probability G a8:99:91 matrix T ::3::::: bits 2.3 * * 2.0 * * 1.8 * * 1.6 ** **** Relative 1.4 ******** Entropy 1.1 ******** (13.8 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GGCGGCGC consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:7000930-7001050 71 3.66e-06 CAAGATGGAT GGCGGCGC AGGCAgagag chr2L:8437274-8437394 51 3.66e-06 ATGCGAACGA GGCGGCGC AAACAGAATT chrX:6110000-6110120 102 8.80e-06 GCGGACGCCA GGTGGCGC CACACATGTA chrX:2720279-2720399 14 8.80e-06 ACATTGATAA GGTGGCGC ACGCAGGCTC chrX:18239431-18239551 109 8.80e-06 CAAGCCGCTA GGTGGCGC TATG chr3R:10100695-10100815 56 8.80e-06 TTGGCCAGAA GGTGGCGC TCGATGCGAC chr2L:901468-901588 27 1.39e-05 CAGATGTCGG GACGGCGC GAACGCCATT chr2L:23332506-23332626 16 1.39e-05 cctataaagg gacggcgc aagtgcaact chr2L:10767841-10767961 48 3.42e-05 CAAATTACGA GGCGACGC AGAGCCGACT chrX:3968840-3968960 78 3.42e-05 CCACAGGTCT GGCAGCGC AAAAGCTTGT chr2L:5907009-5907129 107 3.42e-05 TGATACCACT GGCAGCGC TACGCA chr3R:15320503-15320623 29 3.42e-05 CAACCACTTC GGCGGCAC CATCCCCAGT chrX:6091208-6091328 2 3.42e-05 C GGCGGCAC TCCCCCTCTT chr3R:31060367-31060487 67 3.42e-05 TTCCTCTGCT GGCGACGC TGCTTTTCCT chr2R:22379351-22379471 109 3.42e-05 GAATCTCCTT GGCGGCGA CTAA chrX:8491937-8492057 51 3.42e-05 TGCCCACAGT GGCGGCGA GAAAAATGAG chr2L:4292672-4292792 21 3.80e-05 CGTGCGAGGA GGCGGCGG ACATGGAGAA chr2R:20906671-20906791 83 4.51e-05 ACCAACGGTA GATGGCGC CAGTGCAACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:7000930-7001050 3.7e-06 70_[+3]_42 chr2L:8437274-8437394 3.7e-06 50_[+3]_62 chrX:6110000-6110120 8.8e-06 101_[+3]_11 chrX:2720279-2720399 8.8e-06 13_[+3]_99 chrX:18239431-18239551 8.8e-06 108_[+3]_4 chr3R:10100695-10100815 8.8e-06 55_[+3]_57 chr2L:901468-901588 1.4e-05 26_[+3]_86 chr2L:23332506-23332626 1.4e-05 15_[+3]_97 chr2L:10767841-10767961 3.4e-05 47_[+3]_65 chrX:3968840-3968960 3.4e-05 77_[+3]_35 chr2L:5907009-5907129 3.4e-05 106_[+3]_6 chr3R:15320503-15320623 3.4e-05 28_[+3]_84 chrX:6091208-6091328 3.4e-05 1_[+3]_111 chr3R:31060367-31060487 3.4e-05 66_[+3]_46 chr2R:22379351-22379471 3.4e-05 108_[+3]_4 chrX:8491937-8492057 3.4e-05 50_[+3]_62 chr2L:4292672-4292792 3.8e-05 20_[+3]_92 chr2R:20906671-20906791 4.5e-05 82_[+3]_30 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GGCGGCGC width=8 seqs=18 chr3R:7000930-7001050 ( 71) GGCGGCGC 1 chr2L:8437274-8437394 ( 51) GGCGGCGC 1 chrX:6110000-6110120 ( 102) GGTGGCGC 1 chrX:2720279-2720399 ( 14) GGTGGCGC 1 chrX:18239431-18239551 ( 109) GGTGGCGC 1 chr3R:10100695-10100815 ( 56) GGTGGCGC 1 chr2L:901468-901588 ( 27) GACGGCGC 1 chr2L:23332506-23332626 ( 16) GACGGCGC 1 chr2L:10767841-10767961 ( 48) GGCGACGC 1 chrX:3968840-3968960 ( 78) GGCAGCGC 1 chr2L:5907009-5907129 ( 107) GGCAGCGC 1 chr3R:15320503-15320623 ( 29) GGCGGCAC 1 chrX:6091208-6091328 ( 2) GGCGGCAC 1 chr3R:31060367-31060487 ( 67) GGCGACGC 1 chr2R:22379351-22379471 ( 109) GGCGGCGA 1 chrX:8491937-8492057 ( 51) GGCGGCGA 1 chr2L:4292672-4292792 ( 21) GGCGGCGG 1 chr2R:20906671-20906791 ( 83) GATGGCGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 1.3e+003 -1081 -1081 224 -1081 -81 -1081 198 -1081 -1081 181 -1081 -6 -140 -1081 207 -1081 -140 -1081 207 -1081 -1081 228 -1081 -1081 -140 -1081 207 -1081 -140 201 -192 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 1.3e+003 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 0.000000 0.000000 0.722222 0.000000 0.277778 0.111111 0.000000 0.888889 0.000000 0.111111 0.000000 0.888889 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.000000 0.888889 0.000000 0.111111 0.833333 0.055556 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GGCGGCGC MEME-3 regular expression -------------------------------------------------------------------------------- GG[CT]GGCGC -------------------------------------------------------------------------------- Time 19.98 secs. ******************************************************************************** ******************************************************************************** MOTIF CCGCCCCC MEME-4 width = 8 sites = 2 llr = 25 E-value = 1.2e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif CCGCCCCC MEME-4 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C aa:aaaaa probability G ::a::::: matrix T :::::::: bits 2.3 ******** 2.0 ******** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (18.2 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CCGCCCCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCCC MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3R:6850033-6850153 100 3.32e-06 ACGGCAGACT CCGCCCCC AGTCTTGATT chr2L:936993-937113 7 3.32e-06 AAATTG CCGCCCCC GAAAACGCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCCC MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3R:6850033-6850153 3.3e-06 99_[+4]_13 chr2L:936993-937113 3.3e-06 6_[+4]_106 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCCC MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF CCGCCCCC width=8 seqs=2 chr3R:6850033-6850153 ( 100) CCGCCCCC 1 chr2L:936993-937113 ( 7) CCGCCCCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCCC MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 1.2e+004 -765 227 -765 -765 -765 227 -765 -765 -765 -765 224 -765 -765 227 -765 -765 -765 227 -765 -765 -765 227 -765 -765 -765 227 -765 -765 -765 227 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCCC MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+004 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif CCGCCCCC MEME-4 regular expression -------------------------------------------------------------------------------- CCGCCCCC -------------------------------------------------------------------------------- Time 26.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCCGCC MEME-5 width = 8 sites = 2 llr = 25 E-value = 3.1e+004 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-5 Description -------------------------------------------------------------------------------- Simplified A :::::::: pos.-specific C :a:aa:aa probability G a:a::a:: matrix T :::::::: bits 2.3 ******** 2.0 ******** 1.8 ******** 1.6 ******** Relative 1.4 ******** Entropy 1.1 ******** (18.1 bits) 0.9 ******** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCCGCC consensus sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:1476998-1477118 76 3.48e-06 GTGCTGTAAA GCGCCGCC ATTTAATTGC chrX:8491937-8492057 77 3.48e-06 AGACCCGCAT GCGCCGCC GGCCCATATG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:1476998-1477118 3.5e-06 75_[+5]_37 chrX:8491937-8492057 3.5e-06 76_[+5]_36 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCCGCC width=8 seqs=2 chrX:1476998-1477118 ( 76) GCGCCGCC 1 chrX:8491937-8492057 ( 77) GCGCCGCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 13.7859 E= 3.1e+004 -765 -765 224 -765 -765 227 -765 -765 -765 -765 224 -765 -765 227 -765 -765 -765 227 -765 -765 -765 -765 224 -765 -765 227 -765 -765 -765 227 -765 -765 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 3.1e+004 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCCGCC MEME-5 regular expression -------------------------------------------------------------------------------- GCGCCGCC -------------------------------------------------------------------------------- Time 32.39 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:1071080-1071200 9.88e-01 120 chr3R:26859325-26859445 6.16e-01 120 chrX:16105834-16105954 2.77e-01 120 chr3L:22207252-22207372 9.92e-01 120 chr3R:29699376-29699496 9.61e-01 120 chr2L:23332506-23332626 2.50e-02 15_[+3(1.39e-05)]_97 chr3L:8853020-8853140 3.40e-01 120 chr3R:15644897-15645017 5.19e-01 120 chr2L:5001026-5001146 5.57e-01 120 chrX:5866258-5866378 7.53e-01 120 chrX:12075700-12075820 9.98e-01 120 chr2R:22450465-22450585 9.96e-01 120 chr2R:6983954-6984074 6.81e-01 120 chrX:6179556-6179676 9.77e-01 120 chrX:8417062-8417182 9.99e-01 120 chr3R:22447409-22447529 9.41e-01 120 chrX:2036954-2037074 9.98e-01 120 chrX:19665966-19666086 3.45e-01 120 chrX:5889148-5889268 9.03e-01 120 chr2R:10013324-10013444 6.13e-01 120 chr2R:24292823-24292943 9.55e-01 120 chrX:2708299-2708419 2.26e-01 120 chr2L:1316564-1316684 9.84e-01 120 chr3R:18315387-18315507 8.72e-01 120 chrX:948256-948376 8.49e-01 120 chr2L:2528232-2528352 9.27e-01 120 chr2L:8437274-8437394 6.89e-03 50_[+3(3.66e-06)]_62 chr3R:30729148-30729268 9.96e-01 120 chr2R:19971475-19971595 9.91e-01 120 chr2L:4292672-4292792 9.45e-03 20_[+3(3.80e-05)]_92 chrX:8542850-8542970 9.99e-01 120 chr2L:1837862-1837982 8.39e-01 120 chrX:5737160-5737280 2.67e-01 120 chr2R:22197215-22197335 9.92e-01 120 chrX:8720372-8720492 8.97e-01 120 chr3R:6869485-6869605 1.00e+00 120 chrX:16650559-16650679 1.00e+00 120 chrX:7539301-7539421 9.78e-01 120 chrX:10473754-10473874 2.25e-01 120 chr2L:19140409-19140529 9.87e-01 120 chr2R:13507056-13507176 1.21e-02 28_[+2(9.93e-06)]_84 chr2L:20948775-20948895 4.36e-01 120 chr2R:16672999-16673119 8.61e-01 120 chrX:7488376-7488496 9.79e-01 120 chr3R:8524430-8524550 5.21e-02 74_[+2(2.65e-05)]_38 chrX:11846496-11846616 9.78e-01 120 chr3L:4353897-4354017 3.67e-01 120 chr3L:11408765-11408885 7.10e-01 120 chrX:11283700-11283820 3.10e-02 59_[+2(2.65e-05)]_53 chr2R:9941594-9941714 8.03e-01 120 chr3R:23941688-23941808 7.67e-01 120 chrX:17465615-17465735 9.75e-01 120 chrX:842053-842173 9.97e-01 120 chr3R:17777032-17777152 6.71e-01 120 chr2R:23202122-23202242 8.57e-01 120 chr2R:20641522-20641642 6.46e-01 120 chrX:6615572-6615692 8.00e-01 120 chr3L:22871073-22871193 1.14e-03 56_[+2(1.47e-05)]_56 chr3R:13469316-13469436 9.78e-01 120 chr3R:28118230-28118350 9.99e-01 120 chr2L:936993-937113 1.30e-02 6_[+4(3.32e-06)]_106 chrX:8491937-8492057 7.09e-05 50_[+3(3.42e-05)]_18_[+5(3.48e-06)]_\ 36 chrX:11391689-11391809 9.77e-01 120 chrX:8835279-8835399 9.90e-01 120 chr2L:6956884-6957004 6.33e-02 120 chr2L:10437462-10437582 1.98e-01 120 chrX:18494267-18494387 8.98e-01 120 chr2R:12870821-12870941 4.43e-03 72_[+3(7.90e-05)]_40 chrX:8601321-8601441 1.55e-02 110_[+2(5.38e-05)]_2 chrX:9220561-9220681 5.40e-04 10_[+2(1.96e-05)]_102 chr2L:18150447-18150567 3.86e-01 120 chrX:13253219-13253339 9.97e-01 120 chr3L:2894842-2894962 8.95e-02 120 chr2L:9911894-9912014 1.15e-01 120 chrX:10184801-10184921 1.00e+00 120 chr2L:19233451-19233571 1.69e-01 39_[+1(1.86e-05)]_73 chr2L:16816082-16816202 4.63e-03 120 chr2R:22379351-22379471 7.06e-02 108_[+3(3.42e-05)]_4 chr2R:18812006-18812126 7.42e-01 120 chrX:17229876-17229996 9.35e-01 120 chr2R:7063805-7063925 7.51e-01 120 chr3L:20389079-20389199 7.81e-01 120 chr3L:10862067-10862187 9.86e-01 120 chr3L:3785889-3786009 1.00e+00 120 chr3R:31060367-31060487 9.73e-03 66_[+3(3.42e-05)]_46 chr3L:2913450-2913570 9.98e-01 120 chrX:11355740-11355860 5.37e-01 120 chrX:19748715-19748835 9.63e-01 120 chrX:10825470-10825590 9.54e-01 120 chr3R:14569538-14569658 3.10e-01 120 chr2R:21910034-21910154 9.33e-01 120 chr3R:24585504-24585624 7.33e-01 120 chrX:10067661-10067781 9.99e-01 120 chr3L:1880886-1881006 9.91e-01 120 chr3R:31805432-31805552 8.97e-01 120 chr3L:13015341-13015461 1.56e-01 13_[+1(1.86e-05)]_99 chr3R:10100695-10100815 3.19e-04 55_[+3(8.80e-06)]_57 chrX:18239431-18239551 8.14e-02 108_[+3(8.80e-06)]_4 chrX:11341042-11341162 1.00e+00 120 chr3L:1534269-1534389 3.92e-01 120 chr2L:5771296-5771416 1.52e-01 120 chrX:4117497-4117617 2.54e-01 120 chrX:4498380-4498500 9.88e-01 120 chrX:18366675-18366795 5.35e-01 120 chrX:4113743-4113863 5.73e-01 120 chr2L:8894350-8894470 8.78e-01 120 chr3R:26056501-26056621 1.00e+00 120 chr3R:28857409-28857529 9.28e-01 120 chr2R:16097163-16097283 9.41e-01 120 chrX:6091208-6091328 4.40e-02 1_[+3(3.42e-05)]_111 chr3L:3970567-3970687 9.97e-01 120 chr2R:20590754-20590874 8.89e-01 120 chr2L:17384605-17384725 3.82e-04 72_[+1(1.86e-05)]_3_[+2(4.91e-06)]_\ 29 chr3L:7634821-7634941 4.13e-01 120 chr3L:22277363-22277483 9.18e-01 120 chr3R:30789560-30789680 9.99e-01 120 chr3R:10605210-10605330 2.20e-04 58_[+2(1.96e-05)]_54 chr3R:6850033-6850153 5.25e-03 99_[+4(3.32e-06)]_13 chr3R:5282829-5282949 5.86e-01 120 chrX:618708-618828 5.84e-01 120 chr3R:26799012-26799132 6.52e-01 120 chr3L:14029111-14029231 1.25e-01 32_[+1(1.86e-05)]_80 chr2R:6494358-6494478 2.84e-04 6_[+1(1.86e-05)]_79_[+2(8.64e-05)]_\ 19 chrX:4649882-4650002 5.89e-01 120 chrX:12221695-12221815 1.72e-02 36_[+2(4.91e-06)]_76 chr2R:20994801-20994921 6.54e-02 120 chrX:10325972-10326092 5.20e-01 120 chr2L:11203746-11203866 9.99e-01 120 chrX:4262836-4262956 9.59e-01 120 chrX:6663240-6663360 2.64e-01 120 chr2L:14619760-14619880 9.29e-01 120 chrX:10463245-10463365 1.87e-02 120 chr2R:24411797-24411917 9.62e-01 120 chrX:18837189-18837309 3.48e-01 120 chr3L:16544369-16544489 1.00e+00 120 chrX:2720279-2720399 4.77e-03 13_[+3(8.80e-06)]_99 chr2L:14141330-14141450 3.07e-01 120 chr2L:901468-901588 7.78e-02 26_[+3(1.39e-05)]_86 chrX:8677565-8677685 1.00e+00 120 chr2R:19310935-19311055 9.89e-01 120 chr2R:19127963-19128083 9.90e-01 120 chr3L:627875-627995 5.18e-02 120 chr3R:30815025-30815145 9.24e-01 120 chr3L:8419142-8419262 1.00e+00 120 chr3R:15320503-15320623 3.35e-02 28_[+3(3.42e-05)]_84 chr3L:3320165-3320285 9.42e-01 120 chrX:6110000-6110120 1.30e-02 101_[+3(8.80e-06)]_11 chr2R:17160979-17161099 7.35e-01 120 chr3R:30076183-30076303 6.16e-01 120 chr3L:9614085-9614205 3.28e-01 120 chr3R:16655787-16655907 4.26e-02 23_[+1(1.86e-05)]_89 chr3L:15234631-15234751 7.87e-01 120 chr2R:7246723-7246843 8.96e-01 120 chr2R:20906671-20906791 6.71e-02 82_[+3(4.51e-05)]_30 chr2R:13008232-13008352 3.27e-02 120 chr3L:1463772-1463892 1.14e-01 120 chr2L:21260962-21261082 8.49e-01 120 chr3R:16996252-16996372 9.78e-01 120 chrX:19495368-19495488 1.25e-01 120 chrX:11715451-11715571 9.46e-02 120 chr2L:3598619-3598739 7.41e-01 120 chrX:13822163-13822283 6.93e-03 112_[+2(4.91e-06)] chrX:19964415-19964535 9.38e-01 120 chr2L:5907009-5907129 5.81e-02 106_[+3(3.42e-05)]_6 chr3R:21118886-21119006 9.00e-01 120 chr2L:8611015-8611135 9.58e-01 120 chr3L:21821839-21821959 4.52e-02 120 chr3R:26567014-26567134 4.41e-01 120 chrX:14602674-14602794 4.95e-02 120 chr3L:16768440-16768560 1.00e+00 120 chr3R:5120939-5121059 8.30e-01 120 chrX:5968221-5968341 8.84e-01 120 chr3R:8744339-8744459 9.60e-01 120 chr3R:27440666-27440786 4.80e-02 40_[+1(1.86e-05)]_72 chr3R:30501271-30501391 9.57e-01 120 chrX:11154015-11154135 5.92e-01 120 chrX:7703126-7703246 9.96e-01 120 chrX:3690697-3690817 8.67e-01 120 chr2R:21527377-21527497 9.94e-01 120 chr2L:2494659-2494779 9.47e-01 120 chr3L:18672361-18672481 7.99e-02 120 chr3R:8517782-8517902 4.68e-03 65_[+1(1.86e-05)]_47 chr2R:22373524-22373644 1.00e+00 120 chr3R:11735449-11735569 2.00e-02 120 chr3L:20276752-20276872 8.98e-01 120 chr3L:6752323-6752443 5.98e-03 120 chr2R:11792750-11792870 1.29e-01 120 chr3R:22025478-22025598 7.47e-01 120 chrX:3714189-3714309 3.56e-01 120 chrX:14826108-14826228 4.03e-02 120 chr3R:11372796-11372916 1.91e-01 120 chr3L:9864291-9864411 4.39e-01 120 chr2R:21514458-21514578 9.78e-01 120 chr2R:23385750-23385870 9.73e-01 120 chr3R:26235177-26235297 5.78e-01 120 chr2L:2729989-2730109 6.01e-04 9_[+2(1.96e-05)]_103 chr3R:16355528-16355648 9.95e-01 120 chrX:15739052-15739172 1.00e+00 120 chr3R:19113962-19114082 6.14e-01 120 chr3L:19914937-19915057 1.16e-01 120 chrX:4011006-4011126 7.90e-01 120 chr3L:13964658-13964778 9.77e-01 120 chr3R:26230158-26230278 7.48e-02 120 chr2L:14562426-14562546 9.27e-01 120 chrX:1880368-1880488 9.99e-01 120 chr3R:22664413-22664533 6.25e-01 120 chrX:4116949-4117069 4.34e-02 120 chr2L:17583111-17583231 1.00e+00 120 chr3L:224201-224321 2.69e-01 120 chr3R:10411854-10411974 9.90e-01 120 chrX:5923297-5923417 8.72e-01 120 chrX:4540726-4540846 8.68e-01 120 chr2L:14094777-14094897 8.82e-01 120 chr3R:4846935-4847055 9.37e-01 120 chr3R:5076388-5076508 9.92e-01 120 chrX:10086390-10086510 4.15e-01 120 chrX:7901804-7901924 6.19e-03 32_[+2(8.64e-05)]_80 chr3R:5861758-5861878 9.39e-01 120 chr3R:10024171-10024291 8.39e-01 120 chr3R:21499654-21499774 8.55e-01 120 chr2R:10899098-10899218 9.62e-01 120 chr2L:3444964-3445084 8.22e-01 120 chr2R:7939101-7939221 8.02e-01 120 chr3L:8110312-8110432 3.84e-01 120 chr2L:12351103-12351223 1.00e+00 120 chr2R:7636652-7636772 4.53e-02 120 chr3L:199257-199377 2.42e-01 120 chr2L:7494469-7494589 9.92e-01 120 chrX:5671794-5671914 2.76e-01 120 chr3R:23157873-23157993 5.78e-01 120 chrX:1476998-1477118 5.18e-05 37_[+1(1.86e-05)]_30_[+5(3.48e-06)]_\ 37 chrX:17738316-17738436 8.23e-04 62_[+2(4.91e-06)]_50 chr3L:1295798-1295918 1.61e-01 120 chrX:5312164-5312284 2.26e-02 120 chrX:18774946-18775066 2.40e-01 120 chr3R:7000930-7001050 1.29e-03 70_[+3(3.66e-06)]_42 chrX:10387758-10387878 4.86e-01 120 chrX:16683919-16684039 4.74e-01 120 chr2R:13054990-13055110 9.83e-01 120 chr3L:9899186-9899306 8.61e-01 120 chr2L:3042236-3042356 9.90e-01 120 chrX:7710945-7711065 9.29e-02 21_[+3(4.51e-05)]_38_[+3(4.51e-05)]_\ 45 chrX:1083262-1083382 4.62e-01 120 chr3R:21850214-21850334 8.63e-01 120 chr3L:13917903-13918023 7.63e-01 120 chr2R:16551988-16552108 7.54e-02 120 chrX:3968840-3968960 1.48e-01 77_[+3(3.42e-05)]_35 chr2R:10066622-10066742 9.96e-01 120 chr2L:10767841-10767961 5.25e-03 47_[+3(3.42e-05)]_65 chrX:8606299-8606419 6.81e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c27n11.farnam.hpc.yale.internal ********************************************************************************