******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 5.3.3 (Release date: Sun Feb 7 15:39:52 2021 -0800) For further information on how to interpret these results please access https://meme-suite.org/meme. To get a copy of the MEME Suite software please access https://meme-suite.org. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** PRIMARY SEQUENCES= ../result/final_prediction/fly/fasta/RankLinear8.0_60/ATbp.fasta CONTROL SEQUENCES= --none-- ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ chr3L:20276016-20276136 1.0000 120 chr2L:20852208-20852328 1.0000 120 chr2R:20063346-20063466 1.0000 120 chr2R:7064836-7064956 1.0000 120 chr2R:12729996-12730116 1.0000 120 chr2L:8285340-8285460 1.0000 120 chrX:11442372-11442492 1.0000 120 chr3R:19182992-19183112 1.0000 120 chr2L:1400231-1400351 1.0000 120 chr3L:16429587-16429707 1.0000 120 chr2R:11706349-11706469 1.0000 120 chr2L:13801321-13801441 1.0000 120 chr3L:4311457-4311577 1.0000 120 chr3R:5287086-5287206 1.0000 120 chr2L:2883609-2883729 1.0000 120 chr3R:15926075-15926195 1.0000 120 chr3R:24201819-24201939 1.0000 120 chr3R:19467573-19467693 1.0000 120 chrX:19783629-19783749 1.0000 120 chr3R:10150685-10150805 1.0000 120 chr2L:14307658-14307778 1.0000 120 chr2L:4475507-4475627 1.0000 120 chr2R:11084966-11085086 1.0000 120 chr2L:18717489-18717609 1.0000 120 chr3R:6203133-6203253 1.0000 120 chr3R:20975339-20975459 1.0000 120 chr3L:19340634-19340754 1.0000 120 chr3L:19073316-19073436 1.0000 120 chr2R:10673350-10673470 1.0000 120 chrX:22509198-22509318 1.0000 120 chr3L:4615206-4615326 1.0000 120 chrX:9911889-9912009 1.0000 120 chr3L:14536207-14536327 1.0000 120 chr3L:22053495-22053615 1.0000 120 chr2R:16785651-16785771 1.0000 120 chrX:10043998-10044118 1.0000 120 chr3R:12585844-12585964 1.0000 120 chr3R:24301581-24301701 1.0000 120 chr3L:2004912-2005032 1.0000 120 chr2R:8045745-8045865 1.0000 120 chr3L:8946121-8946241 1.0000 120 chr2L:1913137-1913257 1.0000 120 chr3L:1496481-1496601 1.0000 120 chr2R:14073624-14073744 1.0000 120 chr2R:7316743-7316863 1.0000 120 chrX:9644935-9645055 1.0000 120 chr3L:16431200-16431320 1.0000 120 chrX:15617190-15617310 1.0000 120 chr3R:23876830-23876950 1.0000 120 chrX:17509711-17509831 1.0000 120 chr2L:16451933-16452053 1.0000 120 chr3L:10741298-10741418 1.0000 120 chr2R:15529989-15530109 1.0000 120 chr3R:27254151-27254271 1.0000 120 chr3L:16486618-16486738 1.0000 120 chrX:2192006-2192126 1.0000 120 chr2L:5085013-5085133 1.0000 120 chr3L:17808954-17809074 1.0000 120 chr2L:18496945-18497065 1.0000 120 chr2R:20101028-20101148 1.0000 120 chr2R:17272600-17272720 1.0000 120 chr2R:15304844-15304964 1.0000 120 chr3L:5992372-5992492 1.0000 120 chr2L:20004447-20004567 1.0000 120 chr2R:18877775-18877895 1.0000 120 chr3R:30932224-30932344 1.0000 120 chr2R:16820412-16820532 1.0000 120 chr2R:12729326-12729446 1.0000 120 chr2L:12509602-12509722 1.0000 120 chr3R:30489921-30490041 1.0000 120 chr3R:9889098-9889218 1.0000 120 chr2R:10212488-10212608 1.0000 120 chr3R:22261151-22261271 1.0000 120 chr3R:13766573-13766693 1.0000 120 chr2R:21874164-21874284 1.0000 120 chr4:393235-393355 1.0000 120 chr2L:3888318-3888438 1.0000 120 chr2R:6971152-6971272 1.0000 120 chr2R:22200039-22200159 1.0000 120 chr2L:7528223-7528343 1.0000 120 chr2R:14009834-14009954 1.0000 120 chr2R:12441388-12441508 1.0000 120 chr2L:7387043-7387163 1.0000 120 chr2R:8683526-8683646 1.0000 120 chr3R:29480081-29480201 1.0000 120 chrX:18141086-18141206 1.0000 120 chr3R:31240177-31240297 1.0000 120 chr3L:20901130-20901250 1.0000 120 chr2L:18547430-18547550 1.0000 120 chrX:18238019-18238139 1.0000 120 chr2L:2749229-2749349 1.0000 120 chr2R:12741243-12741363 1.0000 120 chr3R:11991907-11992027 1.0000 120 chr3R:31758930-31759050 1.0000 120 chr2L:1740228-1740348 1.0000 120 chr2L:20016543-20016663 1.0000 120 chr2R:22738390-22738510 1.0000 120 chr3L:14194306-14194426 1.0000 120 chr2L:14310926-14311046 1.0000 120 chr3R:12250402-12250522 1.0000 120 chr3R:14284458-14284578 1.0000 120 chr3L:15597168-15597288 1.0000 120 chr3L:18198298-18198418 1.0000 120 chrX:3358985-3359105 1.0000 120 chr2R:10485634-10485754 1.0000 120 chr2R:7952913-7953033 1.0000 120 chr2L:1916553-1916673 1.0000 120 chr3L:19161436-19161556 1.0000 120 chr2R:11062383-11062503 1.0000 120 chr2L:21198988-21199108 1.0000 120 chr3L:8347491-8347611 1.0000 120 chr3R:25544057-25544177 1.0000 120 chr2L:3345792-3345912 1.0000 120 chr3L:13498090-13498210 1.0000 120 chr3L:8683910-8684030 1.0000 120 chr2L:3576184-3576304 1.0000 120 chr2L:7215825-7215945 1.0000 120 chr3R:27067488-27067608 1.0000 120 chr2L:16721420-16721540 1.0000 120 chr3L:19845663-19845783 1.0000 120 chr2R:22324207-22324327 1.0000 120 chr2R:18667156-18667276 1.0000 120 chr3L:6140321-6140441 1.0000 120 chr2L:18335820-18335940 1.0000 120 chr3R:22573698-22573818 1.0000 120 chr2R:7451131-7451251 1.0000 120 chrX:15497865-15497985 1.0000 120 chrX:772765-772885 1.0000 120 chrX:7227465-7227585 1.0000 120 chr2L:18864240-18864360 1.0000 120 chrX:10115673-10115793 1.0000 120 chr2R:18567339-18567459 1.0000 120 chr2R:9266554-9266674 1.0000 120 chrX:8887602-8887722 1.0000 120 chrX:6253885-6254005 1.0000 120 chr2L:14501706-14501826 1.0000 120 chr3R:18785920-18786040 1.0000 120 chr3R:6765035-6765155 1.0000 120 chrX:13645197-13645317 1.0000 120 chr3L:12265631-12265751 1.0000 120 chr3L:11003064-11003184 1.0000 120 chr3L:18143106-18143226 1.0000 120 chrX:19774428-19774548 1.0000 120 chr2L:1218167-1218287 1.0000 120 chr3L:21259439-21259559 1.0000 120 chrX:13820472-13820592 1.0000 120 chr3L:7996486-7996606 1.0000 120 chr2L:16540857-16540977 1.0000 120 chr3R:21271409-21271529 1.0000 120 chr3R:26908924-26909044 1.0000 120 chr3L:8770958-8771078 1.0000 120 chr3R:31241480-31241600 1.0000 120 chr2R:9269522-9269642 1.0000 120 chr2R:21648185-21648305 1.0000 120 chr2L:12049278-12049398 1.0000 120 chrX:19375619-19375739 1.0000 120 chr2L:470042-470162 1.0000 120 chr3R:8306740-8306860 1.0000 120 chr2R:13305651-13305771 1.0000 120 chrX:13632859-13632979 1.0000 120 chr3L:19847093-19847213 1.0000 120 chr3L:19670662-19670782 1.0000 120 chrX:2653634-2653754 1.0000 120 chrX:17481879-17481999 1.0000 120 chr2L:1094815-1094935 1.0000 120 chr3R:31127616-31127736 1.0000 120 chr3L:8925799-8925919 1.0000 120 chr3L:8379310-8379430 1.0000 120 chrX:362261-362381 1.0000 120 chr2L:19370204-19370324 1.0000 120 chr3R:9448486-9448606 1.0000 120 chr2L:5610210-5610330 1.0000 120 chr3L:4357847-4357967 1.0000 120 chrX:17658487-17658607 1.0000 120 chrX:3811655-3811775 1.0000 120 chr3R:29757332-29757452 1.0000 120 chr2R:13723383-13723503 1.0000 120 chr2R:22546702-22546822 1.0000 120 chr2L:8423973-8424093 1.0000 120 chr3R:8964122-8964242 1.0000 120 chr3R:15667203-15667323 1.0000 120 chr2R:14314481-14314601 1.0000 120 chr2R:21848622-21848742 1.0000 120 chr2L:5338775-5338895 1.0000 120 chr3R:19613091-19613211 1.0000 120 chr3L:17963789-17963909 1.0000 120 chr3R:23445377-23445497 1.0000 120 chr2R:23744769-23744889 1.0000 120 chrX:8837329-8837449 1.0000 120 chr3L:6612780-6612900 1.0000 120 chr2R:7167910-7168030 1.0000 120 chr2L:425615-425735 1.0000 120 chrX:6638240-6638360 1.0000 120 chr3R:23947152-23947272 1.0000 120 chr3R:6241339-6241459 1.0000 120 chrX:6720121-6720241 1.0000 120 chr3L:517400-517520 1.0000 120 chr3R:10186188-10186308 1.0000 120 chr3R:11993404-11993524 1.0000 120 chr3R:6401074-6401194 1.0000 120 chr2L:7525399-7525519 1.0000 120 chrX:18533372-18533492 1.0000 120 chr3L:11317531-11317651 1.0000 120 chr3R:5746787-5746907 1.0000 120 chr2L:19998287-19998407 1.0000 120 chr3R:6182661-6182781 1.0000 120 chr3R:29066441-29066561 1.0000 120 chr2L:856144-856264 1.0000 120 chr3L:7859859-7859979 1.0000 120 chr3R:29717670-29717790 1.0000 120 chr3L:18838010-18838130 1.0000 120 chr2L:1214608-1214728 1.0000 120 chr3L:3755777-3755897 1.0000 120 chr2R:15531565-15531685 1.0000 120 chr2R:19413309-19413429 1.0000 120 chr2R:17714530-17714650 1.0000 120 chr3L:4534041-4534161 1.0000 120 chrX:335063-335183 1.0000 120 chr3L:19191973-19192093 1.0000 120 chr3L:20664108-20664228 1.0000 120 chr2L:10497530-10497650 1.0000 120 chr3R:26539271-26539391 1.0000 120 chrX:7995072-7995192 1.0000 120 chr3L:1690836-1690956 1.0000 120 chr2L:1926034-1926154 1.0000 120 chr3R:31603819-31603939 1.0000 120 chr2L:16422860-16422980 1.0000 120 chr3L:17656813-17656933 1.0000 120 chr2L:5338128-5338248 1.0000 120 chrX:2462142-2462262 1.0000 120 chrX:13088694-13088814 1.0000 120 chr2L:2864717-2864837 1.0000 120 chr3L:12350437-12350557 1.0000 120 chr2R:7756377-7756497 1.0000 120 chr2R:15802151-15802271 1.0000 120 chr2R:17274131-17274251 1.0000 120 chr2R:14031237-14031357 1.0000 120 chrX:13570378-13570498 1.0000 120 chr2R:24321797-24321917 1.0000 120 chr3R:14744531-14744651 1.0000 120 chr3R:27946705-27946825 1.0000 120 chr3L:16974954-16975074 1.0000 120 chr3R:29699335-29699455 1.0000 120 chr2L:20327518-20327638 1.0000 120 chr3R:21629895-21630015 1.0000 120 chr3L:16494919-16495039 1.0000 120 chrX:12889284-12889404 1.0000 120 chr2L:16520041-16520161 1.0000 120 chrX:15591757-15591877 1.0000 120 chr3L:17047831-17047951 1.0000 120 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -oc ../result/final_prediction/fly/inference_raw/MEME/RankLinear8.0_60_ATbp/ -dna -nmotifs 5 -w 8 -maxsize 250000 -nostatus ../result/final_prediction/fly/fasta/RankLinear8.0_60/ATbp.fasta model: mod= zoops nmotifs= 5 evt= inf objective function: em= E-value of product of p-values starts= E-value of product of p-values strands: + width: minw= 8 maxw= 8 nsites: minsites= 2 maxsites= 250 wnsites= 0.8 theta: spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 trim: wg= 11 ws= 1 endgaps= yes data: n= 30000 N= 250 sample: seed= 0 hsfrac= 0 searchsize= 30000 norand= no csites= 1000 Letter frequencies in dataset: A 0.3 C 0.198 G 0.206 T 0.296 Background letter frequencies (from file dataset with add-one prior applied): A 0.3 C 0.198 G 0.206 T 0.296 Background model order: 0 ******************************************************************************** ******************************************************************************** MOTIF DGYAAAYA MEME-1 width = 8 sites = 187 llr = 1208 E-value = 8.0e-055 ******************************************************************************** -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 Description -------------------------------------------------------------------------------- Simplified A 42:98a:a pos.-specific C 11612:6: probability G 37:::::: matrix T 3:4:::4: bits 2.3 2.1 1.9 1.6 * * Relative 1.4 * * * Entropy 1.2 ****** (9.3 bits) 0.9 ******* 0.7 ******* 0.5 ******* 0.2 ******* 0.0 -------- Multilevel AGCAAACA consensus TAT T sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:20327518-20327638 103 3.31e-05 CTGACCGTTA GGCAAACA ATGAACAATT chr2R:7756377-7756497 10 3.31e-05 TGGCCAAAA GGCAAACA AACACGGGAC chr3R:31603819-31603939 69 3.31e-05 TGAACACTTG AGCAAACA TCACCATATT chr3L:1690836-1690956 74 3.31e-05 ACCATATATG GGCAAACA TTTAGACAAA chr3L:3755777-3755897 66 3.31e-05 AAACCAACTG GGCAAACA AGTTGGAGAA chr2L:19998287-19998407 2 3.31e-05 G GGCAAACA ATGAAGTGTG chr3R:23445377-23445497 48 3.31e-05 aaagacaaac ggcaaaca gcgaacaaca chr3L:8379310-8379430 66 3.31e-05 ATGTTTGTCG GGCAAACA ATGGGGCGGA chr3R:31241480-31241600 88 3.31e-05 GTTTGGCTCT GGCAAACA TCGGTGGCAT chr3L:8770958-8771078 79 3.31e-05 AGAACATCAG GGCAAACA TCCGTCGCAC chrX:13820472-13820592 88 3.31e-05 CAATTACTTC GGCAAACA GTGGGAACCA chr2R:22324207-22324327 60 3.31e-05 TGAAAACGAA GGCAAACA CAGGCGGTCT chr2L:3345792-3345912 60 3.31e-05 caaacaaaca agcaaaca aacaaGTGAT chr3R:12250402-12250522 95 3.31e-05 TTTATCTGGC GGCAAACA TTTGCCATGA chr2L:18547430-18547550 91 3.31e-05 GAAAGCCAAA AGCAAACA ATGGCAGGAA chr2L:7387043-7387163 77 3.31e-05 GAAATGCGGC AGCAAACA AATTAGACAA chrX:15617190-15617310 72 3.31e-05 CTATTTGTTG AGCAAACA GCGTAATTGG chr3L:14536207-14536327 106 3.31e-05 TCcacgagcg agcaaaca cagcaaa chr3L:4615206-4615326 70 3.31e-05 TTGCTTGCTG AGCAAACA TGGTAGATAA chr3R:15926075-15926195 41 3.31e-05 GGCAATATAA GGCAAACA CTGGAGTTTG chr3L:16429587-16429707 79 3.31e-05 CATGGTAAAT AGCAAACA ACAAATAGTA chr2L:20852208-20852328 53 3.31e-05 TTGTTTTCCC AGCAAACA ACGAGCAAGC chr2R:14031237-14031357 46 5.25e-05 CATACATAAA TGCAAACA CTTTGTGCAA chr2R:17274131-17274251 42 5.25e-05 CGCACACCAA TGCAAACA CGATTACAAC chr2L:2864717-2864837 51 5.25e-05 GCGTCGGCTG TGCAAACA TTTGCATTTG chrX:7995072-7995192 68 5.25e-05 AAAGTAAATA TGCAAACA ATCGCGCACA chr3L:7859859-7859979 53 5.25e-05 TAACGTGAAA TGCAAACA AAAAGCTGGA chr3R:29757332-29757452 55 5.25e-05 TGCAAATACG TGCAAACA GCCAAGTAAC chr3R:6765035-6765155 32 5.25e-05 CGTCGGCTTG TGCAAACA CACATTAATA chrX:6253885-6254005 61 5.25e-05 TCCACACATA TGCAAACA CTCGAAATTA chr3R:30932224-30932344 52 5.25e-05 GTTTGCAGCG TGCAAACA CGTCACTCGa chr2R:11706349-11706469 86 5.25e-05 CTTATGAGCG TGCAAACA GCATTGGAAG chrX:12889284-12889404 49 1.51e-04 GAAGGGGAGA AGTAAACA AAGGCGACGA chr3L:17656813-17656933 21 1.51e-04 AAATTCGAAG AGCAAATA ATATTGTTTA chr3R:26539271-26539391 67 1.51e-04 TAAATAAACA AGTAAACA AGCCAGCAGC chr3L:4534041-4534161 108 1.51e-04 ATGAGTATAA AGCAAATA AATAT chr3R:6401074-6401194 88 1.51e-04 gaacaaataa agcaaata aataaatgct chrX:6720121-6720241 5 1.51e-04 GTTA AGCAAata tatgtacata chrX:8837329-8837449 43 1.51e-04 TGACAGTATT GGCAAATA AAACTATATT chr3R:19613091-19613211 62 1.51e-04 TTGTATGCTA GGTAAACA AATAACTTCT chr3L:19670662-19670782 62 1.51e-04 CAGTTTGCAG AGTAAACA TATATTCTTT chr3R:8306740-8306860 29 1.51e-04 CTTTTAGTAA AGCAAATA TTGACGTGGT chr3L:21259439-21259559 73 1.51e-04 TTCGTAACTG GGTAAaca cacatagtac chr2L:18864240-18864360 78 1.51e-04 TTGTTTGATG GGCAAATA AGCTGTGGGG chrX:15497865-15497985 25 1.51e-04 GAGCAAAATA AGCAAATA AAGCCGTCTC chr2L:7215825-7215945 42 1.51e-04 TAAATATTTA AGCAAATA CACGAAAATT chr3L:18198298-18198418 71 1.51e-04 TAAACTAAAT GGTAAACA AATATTGGAG chr3R:14284458-14284578 104 1.51e-04 CGGCCACCGA AGCAAATA GAAATCACA chr2L:14310926-14311046 61 1.51e-04 GGTTAGCAGC AGCAAATA TTGACATTTG chr3R:29480081-29480201 69 1.51e-04 CGACAGCCAA AGTAAACA AAGCCGCATC chr2R:22200039-22200159 41 1.51e-04 GACTGGGAAA AGCAAATA GGCCATGTTT chr2L:3888318-3888438 53 1.51e-04 TACCCCAAAA GGTAAACA AAGAAAATTG chr2R:10212488-10212608 102 1.51e-04 TCGAAAGGAA GGCAAATA TTGGGTGAAA chr2L:12509602-12509722 72 1.51e-04 AACAAATAAT AGCAAATA TTGAACCATT chr2R:16785651-16785771 65 1.51e-04 TGCATGTGTA AGCAAATA GTTAGACGAC chr3L:22053495-22053615 45 1.51e-04 TAGTTGGCTG AGTAAACA ACTTAAGGCA chr3R:6203133-6203253 23 1.51e-04 GTCCGTGCTC GGTAAACA CAAACAAAGC chr2L:14307658-14307778 26 1.51e-04 CGACTTTGTA AGCAAATA AACATACAAA chr3L:20276016-20276136 10 1.51e-04 TTTTCTAAA AGCAAATA GTGCCTGCCG chrX:15591757-15591877 98 2.31e-04 CGAAAATTGG AGCACACA CATTGGAAAT chr2R:24321797-24321917 64 2.31e-04 tGCGAGCGGA GGCACACA CTGGAATTAA chr3R:11993404-11993524 97 2.31e-04 catatgtatA TGCAAATA GTGCGGGTGG chr2R:7167910-7168030 34 2.31e-04 TCGAAATGAG TGCAAATA AGCTGATTTT chr2L:5338775-5338895 20 2.31e-04 ATATGCACTT AGCACACA ATTCTTCGAG chrX:17658487-17658607 106 2.31e-04 CACGTACAGT TGTAAaca caacaca chrX:19375619-19375739 35 2.31e-04 GAGCACAGTG AGCACACA ATGTAAAACG chr2L:1218167-1218287 87 2.31e-04 AGATAATAAT TGTAAACA AAAATGTGTG chr2L:14501706-14501826 31 2.31e-04 TTTTTACTTA TGTAAACA GCACCTTCGG chr2R:9266554-9266674 60 2.31e-04 CATTCGGAAA TGTAAACA AACCAAACGT chr2R:12441388-12441508 19 2.31e-04 GTGTTTTGTT TGTAAACA CCGATCGTGG chr2L:7528223-7528343 83 2.31e-04 GCAACTTAAA AGCACACA AACTACACAC chrX:9644935-9645055 4 2.31e-04 TAA TGCAAAta tatgtatttg chr2L:18717489-18717609 81 2.31e-04 CAAACATCTA AGCACACA CCTCCAAGGG chr3L:8347491-8347611 71 2.57e-04 ACGCCAGCTG TGCACACA ACGTCGCGGT chrX:3358985-3359105 10 2.57e-04 TTCTTTTCT CGCAAACA GTGTTTGCTC chr3R:27254151-27254271 61 2.57e-04 CGACATTCTT CGCAAACA AATAATTTAC chr3R:23876830-23876950 93 2.57e-04 ATGAACGCTA TGCACACA CACACACTCT chr2R:12729996-12730116 5 2.57e-04 CAGA TGCACACA TGCAGATGCA chr3L:16494919-16495039 26 3.05e-04 ATTCGTAGGT GACaaaca atgatataaa chr2R:15802151-15802271 32 3.05e-04 CGAAGCCAAA AACAAACA GATAAAAAGA chr3L:17963789-17963909 85 3.05e-04 GAGCCGCACG GACAAACA AAGGGGGCGC chr2R:22546702-22546822 87 3.05e-04 aacaaacgca aaCAAACA AAACAAGTGC chrX:362261-362381 80 3.05e-04 ACTGTCGAAA AACAAACA GAGGAACAAA chr3R:21271409-21271529 61 3.05e-04 ATACAGAAGA AACAAACA AAAGACAAGC chr2L:16540857-16540977 90 3.05e-04 AACGAGGAGA GACAAACA CAACTGTAAC chrX:13645197-13645317 25 3.05e-04 CAAATTTACC AACAAACA AAGCAACAAC chrX:8887602-8887722 22 3.05e-04 TAAAAAGTAA AACAAACA GCCATGGCAA chr2L:1740228-1740348 39 3.05e-04 CTTGTCATTC AACAAACA AGCCAGACAC chr3L:8946121-8946241 78 3.05e-04 ATGTGTGTAT AACAAACA TGTAGAAACG chr2L:4475507-4475627 63 3.05e-04 TGTTTATATA AACAAACA ATCTGAAGTT chr3R:21629895-21630015 44 3.79e-04 GTAGTGGCCG AGTAAATA ATTCCGTTGG chr2L:1926034-1926154 104 3.79e-04 AAATTCGAAT AGTAAATA ATATTTTTT chr3R:23947152-23947272 54 3.79e-04 TGTTTGCGTT GGTAAATA GTGACAAGTT chrX:10115673-10115793 47 3.79e-04 TTGATCATTG GGTAAATA TCAACAAGCG chr2R:22738390-22738510 63 3.79e-04 TTGGTCAGCA GGTAAATA TCGAAAGTGT chr3R:31758930-31759050 34 3.79e-04 TTTTGACAGG GGTAAATA ATCGGGCTGG chr3R:13766573-13766693 71 3.79e-04 AAGTTTTTAG GGTAAATA TAATAGAGTA chr3R:9889098-9889218 58 3.79e-04 CCAAGTGCCA AGTAAATA TGCTCTGATA chrX:17509711-17509831 112 3.79e-04 CAGAGATCCA GGTAAATA T chr2R:14073624-14073744 74 3.79e-04 GCCAGCAAAA AGTAAATA CCCACTGCCG chr3R:10150685-10150805 80 3.79e-04 TGGCTTTAAA AGTAAATA CGGGAGGTAA chr2L:13801321-13801441 71 3.79e-04 GTTATAACTC AGTAAATA ATGGCAAGTG chr2L:16451933-16452053 2 4.07e-04 A TACAAACA ACAGGCAATT chr3R:14744531-14744651 86 5.38e-04 GCCCAAAATG TGTAAATA AGGCCTTAAA chr2L:10497530-10497650 44 5.38e-04 CATCAACCTA TGTAAATA TGTGGCCAAA chr3L:18838010-18838130 37 5.38e-04 AGCTGTCAAA TGTAAATA ACCAAAAGAA chr2L:1094815-1094935 101 5.38e-04 ACCACAACCA TGTAAATA TATTATTATA chr2L:470042-470162 48 5.38e-04 TGTATGGCTC TGTAAATA TCTGAGTGTT chr2R:18667156-18667276 54 5.38e-04 ACTAACTTCT GGCCAACA ATAACAATGA chr2L:2749229-2749349 53 5.38e-04 TTTCTGTTGA GGCCAACA AAGTCAAATC chr3R:31240177-31240297 78 5.38e-04 AGCTCGATTG TGTAAATA TGCAGAGAAG chrX:18141086-18141206 9 5.38e-04 TAGCTTAA TGTAAATA TGTACAAAAG chr3L:17808954-17809074 69 5.38e-04 GTGTAGGTAG TGTAAATA CGTACAATTT chrX:2192006-2192126 62 5.38e-04 TGTTGTCCCG GGTACACA ACAACAGAAA chr2R:15529989-15530109 46 5.38e-04 CAATGCCTTA TGTAAATA TAAATAAGAT chr3R:12585844-12585964 65 5.38e-04 AAATATTCTA AGTACACA CTCGTGCATT chr3R:9448486-9448606 49 6.27e-04 catatgtata tgtacaca gttgttgagt chr3L:19847093-19847213 18 6.27e-04 AAAAGTATTA TGCACATA CATACATTGG chr3L:13498090-13498210 36 6.27e-04 AAAATAAATG TGTACACA AAGCTACAAA chr3L:10741298-10741418 89 6.27e-04 ATTCGGCTTT TGTACACA GGGCGTATGA chr2L:856144-856264 54 8.12e-04 TGCCAAGCTG AATAAACA AGCCGCAAGT chr3R:6182661-6182781 77 8.12e-04 GCCTTTGTTT ACCAAACA ATGGGGGTTT chr3R:5746787-5746907 48 8.12e-04 ACTACTATTA AACAAATA AAGATGGCAA chr2R:14314481-14314601 36 8.12e-04 CAAATAACTC AACAAATA TTTACGGACG chr2L:12049278-12049398 88 8.12e-04 GGAAGAGTTA AACAAATA ATAGGGCCCG chr3L:7996486-7996606 54 8.12e-04 TGAGCAACAA GCCAAACA TGTTGAACAA chr3L:6140321-6140441 16 8.12e-04 CCCAACAAAA AACAAATA TTTGGTCAAT chr2L:16721420-16721540 77 8.12e-04 GGGGCAAGGG GACAAATA TTAATTCACG chr3L:19161436-19161556 97 8.12e-04 ATCAGCCAGT GACAAATA AAATGCCGTA chr2R:16820412-16820532 29 8.12e-04 TAGACGGCCA GACAAATA TTTGTTTGCT chr2R:17272600-17272720 107 8.12e-04 TGCGAATGTG AACAAATA TTTAGT chr2L:18496945-18497065 72 8.12e-04 GAAATCGTTG GATAAACA TGAAACAGTT chr3L:2004912-2005032 44 8.12e-04 CAAAACGACA CGCACACA TGTGGCGAAG chr3R:20975339-20975459 111 8.12e-04 caaaaagaaa aacaaata ca chr3L:19191973-19192093 85 9.47e-04 GGAAAATAAA TACAAATA AATCCACACA chr2L:1214608-1214728 32 9.47e-04 TAACATATCA TACAAATA TATCAGTCTG chr2R:10485634-10485754 13 9.47e-04 GTTGAATACA TATAAACA CAGCTTCCGG chr2R:18877775-18877895 94 9.47e-04 ACTGAGTATC AACACACA AACAGCCACC chrX:10043998-10044118 24 9.47e-04 GTTTGGTCTA AACACACA ATCAACAACC chr2R:11084966-11085086 47 9.47e-04 aacacgacac gacacaca aaacccgaaa chr2R:17714530-17714650 76 1.06e-03 TAATTTTTTG GGTCAACA TACTCGGTAA chr2R:21848622-21848742 55 1.06e-03 CCGTAGGCTA AGTCAACA ACTAATTCAA chr3L:15597168-15597288 35 1.06e-03 AAACCATTGA AGTACATA TGTACATAAG chr2L:20004447-20004567 22 1.06e-03 TGGGTCTGCA AGTACATA CGTATGTACA chr2R:8045745-8045865 51 1.06e-03 AATTGTGAAC AGTCAACA AGGCGAATCA chr2R:15531565-15531685 53 1.10e-03 TTGTTGTTAC TACACACA CACACACTTG chr3L:11317531-11317651 79 1.10e-03 GACAAGCTGA TACACACA TAAGGCAGAG chr2L:3576184-3576304 72 1.10e-03 ATTAGTCAAA CACAAACA ATGAATTTCA chr3R:27946705-27946825 57 1.21e-03 GGTGTACATA TGTACATA TTTACATATA chr3R:18785920-18786040 39 1.21e-03 CTTTGAAGTC TGTCAACA CAAATAAAGA chrX:772765-772885 26 1.21e-03 GCAGAGGGTT TGTACATA GAGGGGCGTA chr3L:8683910-8684030 64 1.21e-03 CAATGAGAAG TGTCAACA TGTGCTCGTC chr3L:20901130-20901250 13 1.21e-03 CTCTTGGCAA TGTCAACA GTTTTGCGCT chr2L:1913137-1913257 16 1.21e-03 TGTTTGGTTC TGTCAACA TCCGCGGCAG chr2L:1400231-1400351 52 1.21e-03 AAGCATCTTA TGCCAATA TGCATCATTA chrX:11442372-11442492 10 1.21e-03 GTATATGTA TGTACATA CATATGTGCG chrX:13088694-13088814 13 1.45e-03 cacacacacg cgcacata cacaGCTTAT chrX:335063-335183 42 1.45e-03 TATATGTGTA ACTAAACA AATGTTAACT chr3R:6241339-6241459 89 1.45e-03 TTGCTAGTCA GCCAAATA GCTTTTTTAC chr2L:425615-425735 53 1.45e-03 AATGATAAGC GCCAAATA TTTGTTGATA chr3L:6612780-6612900 79 1.45e-03 GAATTTCGTG CGTACACA AAGCGCCAGC chr3R:15667203-15667323 24 1.45e-03 TTTAATTATA ACCAAATA CTAGTTGAGG chr2R:7952913-7953033 55 1.45e-03 TCTTTGCGTA GCTAAACA TGAAATGCAT chr3L:12350437-12350557 105 1.72e-03 GTGTGGCTTC TCCAAATA CAGTTGAG chrX:2462142-2462262 76 1.72e-03 GTGTGTTTTG GACCAACA GCCCCCCTCC chr2L:5338128-5338248 46 1.72e-03 GGAAGGTATA TATAAATA CGAGTCCATT chr2L:8423973-8424093 88 1.72e-03 CCAGCAAAGT GATACACA GCAGCTTGGA chr3R:22573698-22573818 28 1.72e-03 TTGAAGTGGC TCTAAACA GTTTGGCTTG chr3R:10186188-10186308 82 1.77e-03 CTAATGTGCA AGTCAATA TTTAACGCCG chr2R:13305651-13305771 86 1.77e-03 GTTTGTGGCT GGTCAATA GGTTCCATTA chr3R:24301581-24301701 49 1.77e-03 TGGTAACCGA AGTCAATA TGCATTTGGA chr2R:18567339-18567459 99 1.92e-03 TAATGAGCTT CATAAACA AGCTGCGCTG chr2L:2883609-2883729 18 1.92e-03 TATTAAAGTT CCCAAACA AACCTGATGA chr2L:7525399-7525519 76 2.00e-03 AATAAGCCAG TGTCAATA TTTGGCCAAA chr3L:17047831-17047951 18 2.15e-03 CTCGGAATAA CGTACATA TTTACATTTT chr3R:31127616-31127736 36 2.15e-03 ATGTAATGAA CGCCAATA TTTACATTCG chr3R:19467573-19467693 77 2.15e-03 CGTATACGTA CGTACATA CCCACATTGT chr2R:20063346-20063466 85 2.15e-03 ATGTGCCCAA GCTAAATA AGCTGACTGC chr2R:23744769-23744889 58 2.45e-03 GATGGTTCAT AATCAACA TGATTTTTTT chr2L:20016543-20016663 2 2.45e-03 A ACCACATA TGTATCTATT chr2R:12741243-12741363 68 2.45e-03 TCAGGCGACA GATCAACA AGCCAAATCT chr2R:20101028-20101148 25 2.45e-03 TTCTTTACTT TCTAAATA TTTTCCTTGG chr3L:11003064-11003184 75 2.69e-03 AATATTGATC CATAAATA ACAGATCCCC chr3R:22261151-22261271 72 2.69e-03 AATGAATGAA TATACATA GATGGTAGAT chr2R:12729326-12729446 63 2.69e-03 TTTATATTTG CATAAATA TTTACACAGA chr3R:19182992-19183112 24 2.69e-03 TGTAAGTAGA Tatacata catacatacg chr2R:7064836-7064956 96 2.69e-03 TAACTTATTA AACCCACA TTGTGAGTCA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:20327518-20327638 3.3e-05 102_[+1]_10 chr2R:7756377-7756497 3.3e-05 9_[+1]_103 chr3R:31603819-31603939 3.3e-05 68_[+1]_44 chr3L:1690836-1690956 3.3e-05 73_[+1]_39 chr3L:3755777-3755897 3.3e-05 65_[+1]_47 chr2L:19998287-19998407 3.3e-05 1_[+1]_111 chr3R:23445377-23445497 3.3e-05 47_[+1]_65 chr3L:8379310-8379430 3.3e-05 65_[+1]_47 chr3R:31241480-31241600 3.3e-05 87_[+1]_25 chr3L:8770958-8771078 3.3e-05 78_[+1]_34 chrX:13820472-13820592 3.3e-05 87_[+1]_25 chr2R:22324207-22324327 3.3e-05 59_[+1]_53 chr2L:3345792-3345912 3.3e-05 59_[+1]_53 chr3R:12250402-12250522 3.3e-05 94_[+1]_18 chr2L:18547430-18547550 3.3e-05 90_[+1]_22 chr2L:7387043-7387163 3.3e-05 76_[+1]_36 chrX:15617190-15617310 3.3e-05 71_[+1]_41 chr3L:14536207-14536327 3.3e-05 105_[+1]_7 chr3L:4615206-4615326 3.3e-05 69_[+1]_43 chr3R:15926075-15926195 3.3e-05 40_[+1]_72 chr3L:16429587-16429707 3.3e-05 78_[+1]_34 chr2L:20852208-20852328 3.3e-05 52_[+1]_60 chr2R:14031237-14031357 5.2e-05 45_[+1]_67 chr2R:17274131-17274251 5.2e-05 41_[+1]_71 chr2L:2864717-2864837 5.2e-05 50_[+1]_62 chrX:7995072-7995192 5.2e-05 67_[+1]_45 chr3L:7859859-7859979 5.2e-05 52_[+1]_60 chr3R:29757332-29757452 5.2e-05 54_[+1]_58 chr3R:6765035-6765155 5.2e-05 31_[+1]_81 chrX:6253885-6254005 5.2e-05 60_[+1]_52 chr3R:30932224-30932344 5.2e-05 51_[+1]_61 chr2R:11706349-11706469 5.2e-05 85_[+1]_27 chrX:12889284-12889404 0.00015 48_[+1]_64 chr3L:17656813-17656933 0.00015 20_[+1]_92 chr3R:26539271-26539391 0.00015 66_[+1]_46 chr3L:4534041-4534161 0.00015 107_[+1]_5 chr3R:6401074-6401194 0.00015 87_[+1]_25 chrX:6720121-6720241 0.00015 4_[+1]_108 chrX:8837329-8837449 0.00015 42_[+1]_70 chr3R:19613091-19613211 0.00015 61_[+1]_51 chr3L:19670662-19670782 0.00015 61_[+1]_51 chr3R:8306740-8306860 0.00015 28_[+1]_84 chr3L:21259439-21259559 0.00015 72_[+1]_40 chr2L:18864240-18864360 0.00015 77_[+1]_35 chrX:15497865-15497985 0.00015 24_[+1]_88 chr2L:7215825-7215945 0.00015 41_[+1]_71 chr3L:18198298-18198418 0.00015 70_[+1]_42 chr3R:14284458-14284578 0.00015 103_[+1]_9 chr2L:14310926-14311046 0.00015 60_[+1]_52 chr3R:29480081-29480201 0.00015 68_[+1]_44 chr2R:22200039-22200159 0.00015 40_[+1]_72 chr2L:3888318-3888438 0.00015 52_[+1]_60 chr2R:10212488-10212608 0.00015 101_[+1]_11 chr2L:12509602-12509722 0.00015 71_[+1]_41 chr2R:16785651-16785771 0.00015 64_[+1]_48 chr3L:22053495-22053615 0.00015 44_[+1]_68 chr3R:6203133-6203253 0.00015 22_[+1]_90 chr2L:14307658-14307778 0.00015 25_[+1]_87 chr3L:20276016-20276136 0.00015 9_[+1]_103 chrX:15591757-15591877 0.00023 97_[+1]_15 chr2R:24321797-24321917 0.00023 63_[+1]_49 chr3R:11993404-11993524 0.00023 96_[+1]_16 chr2R:7167910-7168030 0.00023 33_[+1]_79 chr2L:5338775-5338895 0.00023 19_[+1]_93 chrX:17658487-17658607 0.00023 105_[+1]_7 chrX:19375619-19375739 0.00023 34_[+1]_78 chr2L:1218167-1218287 0.00023 86_[+1]_26 chr2L:14501706-14501826 0.00023 30_[+1]_82 chr2R:9266554-9266674 0.00023 59_[+1]_53 chr2R:12441388-12441508 0.00023 18_[+1]_94 chr2L:7528223-7528343 0.00023 82_[+1]_30 chrX:9644935-9645055 0.00023 3_[+1]_109 chr2L:18717489-18717609 0.00023 80_[+1]_32 chr3L:8347491-8347611 0.00026 70_[+1]_42 chrX:3358985-3359105 0.00026 9_[+1]_103 chr3R:27254151-27254271 0.00026 60_[+1]_52 chr3R:23876830-23876950 0.00026 92_[+1]_20 chr2R:12729996-12730116 0.00026 4_[+1]_108 chr3L:16494919-16495039 0.00031 25_[+1]_87 chr2R:15802151-15802271 0.00031 31_[+1]_81 chr3L:17963789-17963909 0.00031 84_[+1]_28 chr2R:22546702-22546822 0.00031 86_[+1]_26 chrX:362261-362381 0.00031 79_[+1]_33 chr3R:21271409-21271529 0.00031 60_[+1]_52 chr2L:16540857-16540977 0.00031 89_[+1]_23 chrX:13645197-13645317 0.00031 24_[+1]_88 chrX:8887602-8887722 0.00031 21_[+1]_91 chr2L:1740228-1740348 0.00031 38_[+1]_74 chr3L:8946121-8946241 0.00031 77_[+1]_35 chr2L:4475507-4475627 0.00031 62_[+1]_50 chr3R:21629895-21630015 0.00038 43_[+1]_69 chr2L:1926034-1926154 0.00038 103_[+1]_9 chr3R:23947152-23947272 0.00038 53_[+1]_59 chrX:10115673-10115793 0.00038 46_[+1]_66 chr2R:22738390-22738510 0.00038 62_[+1]_50 chr3R:31758930-31759050 0.00038 33_[+1]_79 chr3R:13766573-13766693 0.00038 70_[+1]_42 chr3R:9889098-9889218 0.00038 57_[+1]_55 chrX:17509711-17509831 0.00038 111_[+1]_1 chr2R:14073624-14073744 0.00038 73_[+1]_39 chr3R:10150685-10150805 0.00038 79_[+1]_33 chr2L:13801321-13801441 0.00038 70_[+1]_42 chr2L:16451933-16452053 0.00041 1_[+1]_111 chr3R:14744531-14744651 0.00054 85_[+1]_27 chr2L:10497530-10497650 0.00054 43_[+1]_69 chr3L:18838010-18838130 0.00054 36_[+1]_76 chr2L:1094815-1094935 0.00054 100_[+1]_12 chr2L:470042-470162 0.00054 47_[+1]_65 chr2R:18667156-18667276 0.00054 53_[+1]_59 chr2L:2749229-2749349 0.00054 52_[+1]_60 chr3R:31240177-31240297 0.00054 77_[+1]_35 chrX:18141086-18141206 0.00054 8_[+1]_104 chr3L:17808954-17809074 0.00054 68_[+1]_44 chrX:2192006-2192126 0.00054 61_[+1]_51 chr2R:15529989-15530109 0.00054 45_[+1]_67 chr3R:12585844-12585964 0.00054 64_[+1]_48 chr3R:9448486-9448606 0.00063 48_[+1]_64 chr3L:19847093-19847213 0.00063 17_[+1]_95 chr3L:13498090-13498210 0.00063 35_[+1]_77 chr3L:10741298-10741418 0.00063 88_[+1]_24 chr2L:856144-856264 0.00081 53_[+1]_59 chr3R:6182661-6182781 0.00081 76_[+1]_36 chr3R:5746787-5746907 0.00081 47_[+1]_65 chr2R:14314481-14314601 0.00081 35_[+1]_77 chr2L:12049278-12049398 0.00081 87_[+1]_25 chr3L:7996486-7996606 0.00081 53_[+1]_59 chr3L:6140321-6140441 0.00081 15_[+1]_97 chr2L:16721420-16721540 0.00081 76_[+1]_36 chr3L:19161436-19161556 0.00081 96_[+1]_16 chr2R:16820412-16820532 0.00081 28_[+1]_84 chr2R:17272600-17272720 0.00081 106_[+1]_6 chr2L:18496945-18497065 0.00081 71_[+1]_41 chr3L:2004912-2005032 0.00081 43_[+1]_69 chr3R:20975339-20975459 0.00081 110_[+1]_2 chr3L:19191973-19192093 0.00095 84_[+1]_28 chr2L:1214608-1214728 0.00095 31_[+1]_81 chr2R:10485634-10485754 0.00095 12_[+1]_100 chr2R:18877775-18877895 0.00095 93_[+1]_19 chrX:10043998-10044118 0.00095 23_[+1]_89 chr2R:11084966-11085086 0.00095 46_[+1]_66 chr2R:17714530-17714650 0.0011 75_[+1]_37 chr2R:21848622-21848742 0.0011 54_[+1]_58 chr3L:15597168-15597288 0.0011 34_[+1]_78 chr2L:20004447-20004567 0.0011 21_[+1]_91 chr2R:8045745-8045865 0.0011 50_[+1]_62 chr2R:15531565-15531685 0.0011 52_[+1]_60 chr3L:11317531-11317651 0.0011 78_[+1]_34 chr2L:3576184-3576304 0.0011 71_[+1]_41 chr3R:27946705-27946825 0.0012 56_[+1]_56 chr3R:18785920-18786040 0.0012 38_[+1]_74 chrX:772765-772885 0.0012 25_[+1]_87 chr3L:8683910-8684030 0.0012 63_[+1]_49 chr3L:20901130-20901250 0.0012 12_[+1]_100 chr2L:1913137-1913257 0.0012 15_[+1]_97 chr2L:1400231-1400351 0.0012 51_[+1]_61 chrX:11442372-11442492 0.0012 9_[+1]_103 chrX:13088694-13088814 0.0015 12_[+1]_100 chrX:335063-335183 0.0015 41_[+1]_71 chr3R:6241339-6241459 0.0015 88_[+1]_24 chr2L:425615-425735 0.0015 52_[+1]_60 chr3L:6612780-6612900 0.0015 78_[+1]_34 chr3R:15667203-15667323 0.0015 23_[+1]_89 chr2R:7952913-7953033 0.0015 54_[+1]_58 chr3L:12350437-12350557 0.0017 104_[+1]_8 chrX:2462142-2462262 0.0017 75_[+1]_37 chr2L:5338128-5338248 0.0017 45_[+1]_67 chr2L:8423973-8424093 0.0017 87_[+1]_25 chr3R:22573698-22573818 0.0017 27_[+1]_85 chr3R:10186188-10186308 0.0018 81_[+1]_31 chr2R:13305651-13305771 0.0018 85_[+1]_27 chr3R:24301581-24301701 0.0018 48_[+1]_64 chr2R:18567339-18567459 0.0019 98_[+1]_14 chr2L:2883609-2883729 0.0019 17_[+1]_95 chr2L:7525399-7525519 0.002 75_[+1]_37 chr3L:17047831-17047951 0.0021 17_[+1]_95 chr3R:31127616-31127736 0.0021 35_[+1]_77 chr3R:19467573-19467693 0.0021 76_[+1]_36 chr2R:20063346-20063466 0.0021 84_[+1]_28 chr2R:23744769-23744889 0.0024 57_[+1]_55 chr2L:20016543-20016663 0.0024 1_[+1]_111 chr2R:12741243-12741363 0.0024 67_[+1]_45 chr2R:20101028-20101148 0.0024 24_[+1]_88 chr3L:11003064-11003184 0.0027 74_[+1]_38 chr3R:22261151-22261271 0.0027 71_[+1]_41 chr2R:12729326-12729446 0.0027 62_[+1]_50 chr3R:19182992-19183112 0.0027 23_[+1]_89 chr2R:7064836-7064956 0.0027 95_[+1]_17 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF DGYAAAYA width=8 seqs=187 chr2L:20327518-20327638 ( 103) GGCAAACA 1 chr2R:7756377-7756497 ( 10) GGCAAACA 1 chr3R:31603819-31603939 ( 69) AGCAAACA 1 chr3L:1690836-1690956 ( 74) GGCAAACA 1 chr3L:3755777-3755897 ( 66) GGCAAACA 1 chr2L:19998287-19998407 ( 2) GGCAAACA 1 chr3R:23445377-23445497 ( 48) GGCAAACA 1 chr3L:8379310-8379430 ( 66) GGCAAACA 1 chr3R:31241480-31241600 ( 88) GGCAAACA 1 chr3L:8770958-8771078 ( 79) GGCAAACA 1 chrX:13820472-13820592 ( 88) GGCAAACA 1 chr2R:22324207-22324327 ( 60) GGCAAACA 1 chr2L:3345792-3345912 ( 60) AGCAAACA 1 chr3R:12250402-12250522 ( 95) GGCAAACA 1 chr2L:18547430-18547550 ( 91) AGCAAACA 1 chr2L:7387043-7387163 ( 77) AGCAAACA 1 chrX:15617190-15617310 ( 72) AGCAAACA 1 chr3L:14536207-14536327 ( 106) AGCAAACA 1 chr3L:4615206-4615326 ( 70) AGCAAACA 1 chr3R:15926075-15926195 ( 41) GGCAAACA 1 chr3L:16429587-16429707 ( 79) AGCAAACA 1 chr2L:20852208-20852328 ( 53) AGCAAACA 1 chr2R:14031237-14031357 ( 46) TGCAAACA 1 chr2R:17274131-17274251 ( 42) TGCAAACA 1 chr2L:2864717-2864837 ( 51) TGCAAACA 1 chrX:7995072-7995192 ( 68) TGCAAACA 1 chr3L:7859859-7859979 ( 53) TGCAAACA 1 chr3R:29757332-29757452 ( 55) TGCAAACA 1 chr3R:6765035-6765155 ( 32) TGCAAACA 1 chrX:6253885-6254005 ( 61) TGCAAACA 1 chr3R:30932224-30932344 ( 52) TGCAAACA 1 chr2R:11706349-11706469 ( 86) TGCAAACA 1 chrX:12889284-12889404 ( 49) AGTAAACA 1 chr3L:17656813-17656933 ( 21) AGCAAATA 1 chr3R:26539271-26539391 ( 67) AGTAAACA 1 chr3L:4534041-4534161 ( 108) AGCAAATA 1 chr3R:6401074-6401194 ( 88) AGCAAATA 1 chrX:6720121-6720241 ( 5) AGCAAATA 1 chrX:8837329-8837449 ( 43) GGCAAATA 1 chr3R:19613091-19613211 ( 62) GGTAAACA 1 chr3L:19670662-19670782 ( 62) AGTAAACA 1 chr3R:8306740-8306860 ( 29) AGCAAATA 1 chr3L:21259439-21259559 ( 73) GGTAAACA 1 chr2L:18864240-18864360 ( 78) GGCAAATA 1 chrX:15497865-15497985 ( 25) AGCAAATA 1 chr2L:7215825-7215945 ( 42) AGCAAATA 1 chr3L:18198298-18198418 ( 71) GGTAAACA 1 chr3R:14284458-14284578 ( 104) AGCAAATA 1 chr2L:14310926-14311046 ( 61) AGCAAATA 1 chr3R:29480081-29480201 ( 69) AGTAAACA 1 chr2R:22200039-22200159 ( 41) AGCAAATA 1 chr2L:3888318-3888438 ( 53) GGTAAACA 1 chr2R:10212488-10212608 ( 102) GGCAAATA 1 chr2L:12509602-12509722 ( 72) AGCAAATA 1 chr2R:16785651-16785771 ( 65) AGCAAATA 1 chr3L:22053495-22053615 ( 45) AGTAAACA 1 chr3R:6203133-6203253 ( 23) GGTAAACA 1 chr2L:14307658-14307778 ( 26) AGCAAATA 1 chr3L:20276016-20276136 ( 10) AGCAAATA 1 chrX:15591757-15591877 ( 98) AGCACACA 1 chr2R:24321797-24321917 ( 64) GGCACACA 1 chr3R:11993404-11993524 ( 97) TGCAAATA 1 chr2R:7167910-7168030 ( 34) TGCAAATA 1 chr2L:5338775-5338895 ( 20) AGCACACA 1 chrX:17658487-17658607 ( 106) TGTAAACA 1 chrX:19375619-19375739 ( 35) AGCACACA 1 chr2L:1218167-1218287 ( 87) TGTAAACA 1 chr2L:14501706-14501826 ( 31) TGTAAACA 1 chr2R:9266554-9266674 ( 60) TGTAAACA 1 chr2R:12441388-12441508 ( 19) TGTAAACA 1 chr2L:7528223-7528343 ( 83) AGCACACA 1 chrX:9644935-9645055 ( 4) TGCAAATA 1 chr2L:18717489-18717609 ( 81) AGCACACA 1 chr3L:8347491-8347611 ( 71) TGCACACA 1 chrX:3358985-3359105 ( 10) CGCAAACA 1 chr3R:27254151-27254271 ( 61) CGCAAACA 1 chr3R:23876830-23876950 ( 93) TGCACACA 1 chr2R:12729996-12730116 ( 5) TGCACACA 1 chr3L:16494919-16495039 ( 26) GACAAACA 1 chr2R:15802151-15802271 ( 32) AACAAACA 1 chr3L:17963789-17963909 ( 85) GACAAACA 1 chr2R:22546702-22546822 ( 87) AACAAACA 1 chrX:362261-362381 ( 80) AACAAACA 1 chr3R:21271409-21271529 ( 61) AACAAACA 1 chr2L:16540857-16540977 ( 90) GACAAACA 1 chrX:13645197-13645317 ( 25) AACAAACA 1 chrX:8887602-8887722 ( 22) AACAAACA 1 chr2L:1740228-1740348 ( 39) AACAAACA 1 chr3L:8946121-8946241 ( 78) AACAAACA 1 chr2L:4475507-4475627 ( 63) AACAAACA 1 chr3R:21629895-21630015 ( 44) AGTAAATA 1 chr2L:1926034-1926154 ( 104) AGTAAATA 1 chr3R:23947152-23947272 ( 54) GGTAAATA 1 chrX:10115673-10115793 ( 47) GGTAAATA 1 chr2R:22738390-22738510 ( 63) GGTAAATA 1 chr3R:31758930-31759050 ( 34) GGTAAATA 1 chr3R:13766573-13766693 ( 71) GGTAAATA 1 chr3R:9889098-9889218 ( 58) AGTAAATA 1 chrX:17509711-17509831 ( 112) GGTAAATA 1 chr2R:14073624-14073744 ( 74) AGTAAATA 1 chr3R:10150685-10150805 ( 80) AGTAAATA 1 chr2L:13801321-13801441 ( 71) AGTAAATA 1 chr2L:16451933-16452053 ( 2) TACAAACA 1 chr3R:14744531-14744651 ( 86) TGTAAATA 1 chr2L:10497530-10497650 ( 44) TGTAAATA 1 chr3L:18838010-18838130 ( 37) TGTAAATA 1 chr2L:1094815-1094935 ( 101) TGTAAATA 1 chr2L:470042-470162 ( 48) TGTAAATA 1 chr2R:18667156-18667276 ( 54) GGCCAACA 1 chr2L:2749229-2749349 ( 53) GGCCAACA 1 chr3R:31240177-31240297 ( 78) TGTAAATA 1 chrX:18141086-18141206 ( 9) TGTAAATA 1 chr3L:17808954-17809074 ( 69) TGTAAATA 1 chrX:2192006-2192126 ( 62) GGTACACA 1 chr2R:15529989-15530109 ( 46) TGTAAATA 1 chr3R:12585844-12585964 ( 65) AGTACACA 1 chr3R:9448486-9448606 ( 49) TGTACACA 1 chr3L:19847093-19847213 ( 18) TGCACATA 1 chr3L:13498090-13498210 ( 36) TGTACACA 1 chr3L:10741298-10741418 ( 89) TGTACACA 1 chr2L:856144-856264 ( 54) AATAAACA 1 chr3R:6182661-6182781 ( 77) ACCAAACA 1 chr3R:5746787-5746907 ( 48) AACAAATA 1 chr2R:14314481-14314601 ( 36) AACAAATA 1 chr2L:12049278-12049398 ( 88) AACAAATA 1 chr3L:7996486-7996606 ( 54) GCCAAACA 1 chr3L:6140321-6140441 ( 16) AACAAATA 1 chr2L:16721420-16721540 ( 77) GACAAATA 1 chr3L:19161436-19161556 ( 97) GACAAATA 1 chr2R:16820412-16820532 ( 29) GACAAATA 1 chr2R:17272600-17272720 ( 107) AACAAATA 1 chr2L:18496945-18497065 ( 72) GATAAACA 1 chr3L:2004912-2005032 ( 44) CGCACACA 1 chr3R:20975339-20975459 ( 111) AACAAATA 1 chr3L:19191973-19192093 ( 85) TACAAATA 1 chr2L:1214608-1214728 ( 32) TACAAATA 1 chr2R:10485634-10485754 ( 13) TATAAACA 1 chr2R:18877775-18877895 ( 94) AACACACA 1 chrX:10043998-10044118 ( 24) AACACACA 1 chr2R:11084966-11085086 ( 47) GACACACA 1 chr2R:17714530-17714650 ( 76) GGTCAACA 1 chr2R:21848622-21848742 ( 55) AGTCAACA 1 chr3L:15597168-15597288 ( 35) AGTACATA 1 chr2L:20004447-20004567 ( 22) AGTACATA 1 chr2R:8045745-8045865 ( 51) AGTCAACA 1 chr2R:15531565-15531685 ( 53) TACACACA 1 chr3L:11317531-11317651 ( 79) TACACACA 1 chr2L:3576184-3576304 ( 72) CACAAACA 1 chr3R:27946705-27946825 ( 57) TGTACATA 1 chr3R:18785920-18786040 ( 39) TGTCAACA 1 chrX:772765-772885 ( 26) TGTACATA 1 chr3L:8683910-8684030 ( 64) TGTCAACA 1 chr3L:20901130-20901250 ( 13) TGTCAACA 1 chr2L:1913137-1913257 ( 16) TGTCAACA 1 chr2L:1400231-1400351 ( 52) TGCCAATA 1 chrX:11442372-11442492 ( 10) TGTACATA 1 chrX:13088694-13088814 ( 13) CGCACATA 1 chrX:335063-335183 ( 42) ACTAAACA 1 chr3R:6241339-6241459 ( 89) GCCAAATA 1 chr2L:425615-425735 ( 53) GCCAAATA 1 chr3L:6612780-6612900 ( 79) CGTACACA 1 chr3R:15667203-15667323 ( 24) ACCAAATA 1 chr2R:7952913-7953033 ( 55) GCTAAACA 1 chr3L:12350437-12350557 ( 105) TCCAAATA 1 chrX:2462142-2462262 ( 76) GACCAACA 1 chr2L:5338128-5338248 ( 46) TATAAATA 1 chr2L:8423973-8424093 ( 88) GATACACA 1 chr3R:22573698-22573818 ( 28) TCTAAACA 1 chr3R:10186188-10186308 ( 82) AGTCAATA 1 chr2R:13305651-13305771 ( 86) GGTCAATA 1 chr3R:24301581-24301701 ( 49) AGTCAATA 1 chr2R:18567339-18567459 ( 99) CATAAACA 1 chr2L:2883609-2883729 ( 18) CCCAAACA 1 chr2L:7525399-7525519 ( 76) TGTCAATA 1 chr3L:17047831-17047951 ( 18) CGTACATA 1 chr3R:31127616-31127736 ( 36) CGCCAATA 1 chr3R:19467573-19467693 ( 77) CGTACATA 1 chr2R:20063346-20063466 ( 85) GCTAAATA 1 chr2R:23744769-23744889 ( 58) AATCAACA 1 chr2L:20016543-20016663 ( 2) ACCACATA 1 chr2R:12741243-12741363 ( 68) GATCAACA 1 chr2R:20101028-20101148 ( 25) TCTAAATA 1 chr3L:11003064-11003184 ( 75) CATAAATA 1 chr3R:22261151-22261271 ( 72) TATACATA 1 chr2R:12729326-12729446 ( 63) CATAAATA 1 chr3R:19182992-19183112 ( 24) TATACATA 1 chr2R:7064836-7064956 ( 96) AACCCACA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 8.3122 E= 8.0e-055 32 -151 35 -1 -35 -151 175 -1419 -1419 157 -1419 47 158 -96 -1419 -1419 144 -8 -1419 -1419 174 -1419 -1419 -1419 -1419 155 -1419 51 174 -1419 -1419 -1419 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 187 E= 8.0e-055 0.374332 0.069519 0.262032 0.294118 0.235294 0.069519 0.695187 0.000000 0.000000 0.588235 0.000000 0.411765 0.898396 0.101604 0.000000 0.000000 0.812834 0.187166 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.577540 0.000000 0.422460 1.000000 0.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif DGYAAAYA MEME-1 regular expression -------------------------------------------------------------------------------- [ATG][GA][CT]AAA[CT]A -------------------------------------------------------------------------------- Time 7.86 secs. ******************************************************************************** ******************************************************************************** MOTIF TTGTTTRY MEME-2 width = 8 sites = 128 llr = 921 E-value = 2.2e-040 ******************************************************************************** -------------------------------------------------------------------------------- Motif TTGTTTRY MEME-2 Description -------------------------------------------------------------------------------- Simplified A ::2:::31 pos.-specific C 2::::::6 probability G 2:8:1:6: matrix T 6a:a9a:3 bits 2.3 2.1 1.9 * * * 1.6 * * * Relative 1.4 ***** Entropy 1.2 ***** (10.4 bits) 0.9 ******* 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel TTGTTTGC consensus A AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTRY MEME-2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:16520041-16520161 69 1.91e-05 tttttttttt ttgtttgc ttgGGATCGC chr3L:20664108-20664228 99 1.91e-05 GTGCTGTCTG TTGTTTGC CATGTTTTTG chr2R:19413309-19413429 78 1.91e-05 TACATCACAC TTGTTTGC TGCGGGACAC chr2R:13723383-13723503 23 1.91e-05 TTGATTCCCA TTGTTTGC ATTAGTGTTT chrX:3811655-3811775 76 1.91e-05 TGCCCTGACT TTGtttgc atttgctgac chrX:17658487-17658607 19 1.91e-05 TGCCCAAtgt ttgtttgc ttatgtgttt chrX:13632859-13632979 80 1.91e-05 TTTGAAATCT TTGTTTGC CTATTTACTT chr2L:16540857-16540977 60 1.91e-05 ATAGGAAGTT TTGTTTGC AGTGCGCACA chr3R:22573698-22573818 55 1.91e-05 GCTCAGCCGT TTGTTTGC AATTGGAATT chr3R:27067488-27067608 30 1.91e-05 GGTGAGAGTT TTGTTTGC AGTTCATCAA chr3L:13498090-13498210 81 1.91e-05 CAGCAACAAC TTGTTTGC ATAAGCCACA chr2R:12741243-12741363 44 1.91e-05 TCTTGTTTAT TTGTTTGC CTTTAATCAG chr2R:8683526-8683646 46 1.91e-05 CGTGCCGTGT TTGTTTGC CCCCGTGCCA chr3R:30489921-30490041 88 1.91e-05 TCTGACATCT TTGTTTGC ACAGCGTTTA chr2R:16820412-16820532 38 1.91e-05 AGACAAATAT TTGTTTGC TTTTTGTTGG chr3R:30932224-30932344 40 1.91e-05 GTCCGCTTCT TTGTTTGC AGCGTGCAAA chr2R:15304844-15304964 35 1.91e-05 GCTATGAGTT TTGTTTGC TTGTCTTTTA chr3L:16431200-16431320 78 1.91e-05 atttatttgt ttgtttgC CTAACGCTTT chr3L:4311457-4311577 4 1.91e-05 TGT TTGTTTGC TTCGATCGAA chr3L:12350437-12350557 18 4.52e-05 GTCGGCGTGG CTGTTTGC ATTCACATTT chr2L:19998287-19998407 19 4.52e-05 AATGAAGTGT GTGTTTGC TCAGTCGCCA chr3R:23947152-23947272 43 4.52e-05 CGCACATCAT CTGTTTGC GTTGGTAAAT chr3L:6612780-6612900 43 4.52e-05 GCCCACTGTT CTGTTTGC ATTGCTTATC chr3R:23445377-23445497 3 4.52e-05 GA CTGTTTGC CGTACGCATT chr2L:1094815-1094935 51 4.52e-05 GACGCACGCA CTGTTTGC ACTGTTTGCC chr3L:6140321-6140441 38 4.52e-05 GTCAATGCGC GTGTTTGC CTACAAGTAG chr2R:22324207-22324327 35 4.52e-05 CTCGAATTAT GTGTTTGC TTTGCCATGA chr2L:7215825-7215945 76 4.52e-05 ATAGAAATGA CTGTTTGC ATGTGCCGAG chrX:3358985-3359105 18 4.52e-05 CTCGCAAACA GTGTTTGC TCCTAACATA chr3L:20901130-20901250 36 4.52e-05 GCGCTTTTAT CTGTTTGC ACAGCAGCCG chr3R:31240177-31240297 39 4.52e-05 CAAGTTTATT GTGTTTGC CTTGGCTATT chr3R:24201819-24201939 90 4.52e-05 GATGGATTTG CTGTTTGC TGGCACAAAT chr3L:16974954-16975074 84 7.30e-05 ttatttgcct ttgtttac ttttttttgc chr3L:17963789-17963909 44 7.30e-05 CTTGCGTAAG TTGTTTAC AACGCGATCG chr3R:15667203-15667323 50 7.30e-05 GGCGACACCT TTGTTTAC CTGCATTTTC chr2L:8423973-8424093 14 7.30e-05 TTTCTCAACG TTGTTTAC CCATATTACT chrX:2653634-2653754 28 7.30e-05 CCTTGTTTAT TTGTTTAC ATTAAGCAAC chr2L:16721420-16721540 54 7.30e-05 AGCTTATCAA TTGTTTAC ATAACGGGGC chr3L:19073316-19073436 44 7.30e-05 GTAAACGACG TTGTTTAC TCGCACCCAG chr2R:7064836-7064956 55 7.30e-05 TAACAATGAG TTGTTTAC AAAGTGCTAA chr3L:8925799-8925919 78 1.01e-04 CGTTATTATG TTGTTTGT TCGTTGTTTA chr2R:13305651-13305771 74 1.01e-04 TTCGGGCCTT TTGTTTGT GGCTGGTCAA chr3R:31241480-31241600 72 1.01e-04 GTGTTTGGCT TTGTTTGT TTGGCTCTGG chr2R:11062383-11062503 42 1.01e-04 ttgttatttg ttgtttgt ttttgtgtCG chr3R:12585844-12585964 31 1.01e-04 TAATGCATAA TTGTTTGT GAAGCGAGCA chr3L:4615206-4615326 26 1.01e-04 AAAtgtttgt ttgtttgt ctgtctggct chr2L:14307658-14307778 77 1.01e-04 TATGCTATTT TTGTTTGT CTTTACTAAT chr3R:19467573-19467693 91 1.01e-04 CATACCCACA TTGTTTGT CTACAGCGAC chr3L:16429587-16429707 46 1.01e-04 ATGTTTCTTT TTGTTTGT TCCATAACAA chr3L:16494919-16495039 71 1.29e-04 AATGTTTCCT TTATTTGC GTTTTGTGAA chr3L:17656813-17656933 106 1.29e-04 TTATTAATTC TTATTTGC TGTCCTT chr3L:19161436-19161556 27 1.29e-04 CGCCTTGTTG TTATTTGC TTTAACGGCA chrX:18141086-18141206 87 1.29e-04 CTTTGGGGAA TTATTTGC TAGTGTAAGC chr2R:18877775-18877895 26 1.29e-04 Gtttatttat ttatttgc ttatttatCA chr3L:5992372-5992492 51 1.29e-04 CTTAACGACT TTATTTGC CCAACTTGGG chr3R:27254151-27254271 84 1.29e-04 TTTACATACT TTATTTGC GTTTTGCATA chr2L:16451933-16452053 71 1.29e-04 GAAAAGTTTT TTATTTGC GTTGTGTATC chr3R:31603819-31603939 85 1.43e-04 CATCACCATA TTGTGTGC TAGTTTAGTA chrX:17509711-17509831 32 1.43e-04 CGTATGTTTG TTGTGTGC GCAGTGATAA chr3R:29066441-29066561 11 1.81e-04 GATATTTACA CTGTTTAC ATGCGATACG chr3R:6182661-6182781 38 1.81e-04 ATGGGCTTTA GTGTTTAC CCGGTTCTTA chr3R:19613091-19613211 112 1.81e-04 GTTCCGTAGA CTGTTTAC T chr2R:7451131-7451251 41 1.81e-04 CCCAACACTC GTGTTTAC ACGCGGCTAA chr3R:20975339-20975459 36 1.81e-04 AGGCAGTATT CTGTTTAC CTTTTCTTTG chr2L:13801321-13801441 18 1.81e-04 TTCCTTCGTC GTGTTTAC TATTTGTAGT chr2L:20852208-20852328 30 1.81e-04 CCATCTAAGC CTGTTTAC GTTGCTTGTT chr3L:19847093-19847213 61 2.19e-04 GTTTAAACGA CTGTTTGT CTGCCATAAA chr3R:26908924-26909044 34 2.19e-04 AAGTCAAACA CTGTTTGT TGACGTTACC chr3R:13766573-13766693 108 2.19e-04 AGAGCGCGAA GTGTTTGT TTTAA chr3R:26539271-26539391 10 2.61e-04 CTGTCGCTG TTGTTTAT TTGGTTTTGC chr2L:1214608-1214728 71 2.61e-04 GCTTGTTCCA TTGTTTAT TGATAATATC chr3R:9448486-9448606 68 2.61e-04 ttgttgagtc ttgtttat atatattatc chr2L:12049278-12049398 28 2.61e-04 TTGAATTGAA TTGTTTAT TTATGTTTTG chr3L:18143106-18143226 4 2.61e-04 GCT TTGTTTAT ACGCTTTCCA chr2R:12441388-12441508 96 2.61e-04 AATCTAAATA TTGTTTAT TTACAATATA chr2R:12729326-12729446 50 2.61e-04 CATTCGGCCC TTGTTTAT ATTTGCATAA chr2L:18496945-18497065 5 2.61e-04 CCAT TTGTTTAT GTGTGTTTTA chr2L:4475507-4475627 52 2.61e-04 TTTCTCGTAT TTGTTTAT ATAAACAAAC chr2L:8285340-8285460 32 2.61e-04 AAATTGCTGC TTGTTTAT TTGAGGTCTT chr2L:5085013-5085133 79 2.99e-04 CTTAAATACT CTATTTGC TTGCAGTTGT chr3R:5287086-5287206 37 2.99e-04 AACCCGAAAG CTATTTGC CCAAGTGCAG chr2L:5338128-5338248 77 3.68e-04 CACCCTTAAG TTGTTTGA CTGGCCTATT chr2R:15531565-15531685 113 3.68e-04 TGGCATTCCG TTATTTAC chr2L:425615-425735 27 3.68e-04 CCGCCCCCCT TTGTTTGA CTAGAACAAA chr3L:4357847-4357967 26 3.68e-04 TGCATGAAAC TTATTTAC ACAGTGCTCG chrX:362261-362381 11 3.68e-04 CGGCAATTAT TTATTTAC ACTACCAGGC chr2L:18864240-18864360 68 3.68e-04 AAACAGTCAG TTGTTTGA TGGGCAAATA chr3L:19340634-19340754 66 3.68e-04 TATTATATTG TTATTTAC CATCGCGCAG chr2R:12729996-12730116 38 3.68e-04 TTTTGGCCTC TTGTTTGA CTTTGCCCAA chr3L:20276016-20276136 38 3.68e-04 TGTGGGAGCT TTGTTTGA TTAATAGCCC chrX:2462142-2462262 13 4.28e-04 ATTTTTGTTT TTATTTGT TTCGCTTATT chr2L:18335820-18335940 7 4.28e-04 TCTTCA TTATTTGT ATTTTGATTG chr3R:25544057-25544177 108 4.28e-04 GTGTGAAGTT TTATTTGT CAATC chr3R:10150685-10150805 61 4.28e-04 TAGCCGCCTC TTATTTGT TTGGCTTTAA chrX:19783629-19783749 34 4.28e-04 GGCTGTGTGT GTGTGTGC GCTATATACA chr3R:19182992-19183112 96 4.28e-04 GTTTGTTTGG CTGTGTGC GAAGTTGGCT chr2R:10212488-10212608 46 4.47e-04 CATTTTTGCC TTGTGTAC TTTGACGGCG chr3L:11317531-11317651 108 4.67e-04 ACAGTTGGCG TTGTGTGT CAATT chr3L:7996486-7996606 31 4.67e-04 CAGCTGTTAA TTGTGTGT GATCTTGAGC chr3L:15597168-15597288 67 4.67e-04 CTCAATTATC TTGTGTGT GATATTTCAC chr3L:17047831-17047951 42 5.24e-04 TTTTGTTTTC GTGTTTAT GGAATATTTA chr3L:8379310-8379430 109 5.24e-04 gtgtgtgtgt gtgtttat gtgt chr2R:20063346-20063466 73 5.43e-04 AAACGCTTTT TTATGTGC CCAAGCTAAA chr3R:21629895-21630015 85 6.66e-04 GCGGGGAGGG GTGTTTGA CGGGGGAGGG chr3R:5746787-5746907 95 6.66e-04 GTCTTTTTCT TTGTTTTC TAAGCTAGTC chr3R:11993404-11993524 80 6.66e-04 atgtatgtgt gtatttac atatgtatAT chr2R:21648185-21648305 12 6.66e-04 ATTTTAATGC GTGTTTGA ATTTTGGCTC chr3L:8770958-8771078 38 6.66e-04 TCAACTTCAG CTATTTAC TTTCCATTCA chrX:8887602-8887722 57 6.66e-04 TTTCTACTTT TTGTTTTC CAAGTCGCCG chrX:772765-772885 41 6.66e-04 ATAGAGGGGC GTATTTAC ACAAATGCTC chr2L:1740228-1740348 21 6.66e-04 TGTCTCAAGA GTGTTTGA CTTGTCATTC chr3R:29480081-29480201 43 6.66e-04 CATTTGGGTA CTATTTAC TTTTCCGTCG chr2R:14073624-14073744 2 6.66e-04 a ttgttTTC TTGTTGATTG chr3R:18785920-18786040 76 7.64e-04 TTTACTTTCT CTATTTGT GGATAAGTAA chrX:15617190-15617310 62 7.64e-04 GTGATTACGA CTATTTGT TGAGCAAACA chrX:9644935-9645055 15 7.64e-04 GCAAAtatat gtatttgt atatgtatgt chr2R:7316743-7316863 64 7.64e-04 TTTGATGGGG GTATTTGT CATGTTTCCG chr2L:2883609-2883729 44 7.64e-04 GAAATTCCCA TTGTTTAA ACAAATGTTA chrX:8837329-8837449 12 8.51e-04 AGTTAACATT TTATTTAT TTTTGGAAGA chr2R:23744769-23744889 98 8.51e-04 CTTCGTTTCG TTATTTAT TTAATACATT chr3R:31758930-31759050 94 8.51e-04 CTACGCCAGA GTGTGTAC AGCTTAACAC chr2R:18667156-18667276 87 8.79e-04 CTGCACTTGT CTGTGTGT ACATATTTTT chr3L:14194306-14194426 89 8.79e-04 TTGGTGCAAT GTGTGTGT TTTGCTTTTC chrX:11442372-11442492 35 8.79e-04 GCGCGCTGGT GTGTGTGT GAGaaagtaa chr3L:19191973-19192093 38 1.06e-03 CGCACTGCCT TTATGTAC AGTAAAAATT chr2R:10485634-10485754 33 1.06e-03 GCTTCCGGTG GTGTTTTC CATGTTTATT chr2R:7756377-7756497 60 1.15e-03 AAATGCCAAA CTGTTTAA ACACGAAACA chr3R:11991907-11992027 71 1.29e-03 CCTCGTCGGT ATGTTTGC TTTGTTAAGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTRY MEME-2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:16520041-16520161 1.9e-05 68_[+2]_44 chr3L:20664108-20664228 1.9e-05 98_[+2]_14 chr2R:19413309-19413429 1.9e-05 77_[+2]_35 chr2R:13723383-13723503 1.9e-05 22_[+2]_90 chrX:3811655-3811775 1.9e-05 75_[+2]_37 chrX:17658487-17658607 1.9e-05 18_[+2]_94 chrX:13632859-13632979 1.9e-05 79_[+2]_33 chr2L:16540857-16540977 1.9e-05 59_[+2]_53 chr3R:22573698-22573818 1.9e-05 54_[+2]_58 chr3R:27067488-27067608 1.9e-05 29_[+2]_83 chr3L:13498090-13498210 1.9e-05 80_[+2]_32 chr2R:12741243-12741363 1.9e-05 43_[+2]_69 chr2R:8683526-8683646 1.9e-05 45_[+2]_67 chr3R:30489921-30490041 1.9e-05 87_[+2]_25 chr2R:16820412-16820532 1.9e-05 37_[+2]_75 chr3R:30932224-30932344 1.9e-05 39_[+2]_73 chr2R:15304844-15304964 1.9e-05 34_[+2]_78 chr3L:16431200-16431320 1.9e-05 77_[+2]_35 chr3L:4311457-4311577 1.9e-05 3_[+2]_109 chr3L:12350437-12350557 4.5e-05 17_[+2]_95 chr2L:19998287-19998407 4.5e-05 18_[+2]_94 chr3R:23947152-23947272 4.5e-05 42_[+2]_70 chr3L:6612780-6612900 4.5e-05 42_[+2]_70 chr3R:23445377-23445497 4.5e-05 2_[+2]_110 chr2L:1094815-1094935 4.5e-05 50_[+2]_62 chr3L:6140321-6140441 4.5e-05 37_[+2]_75 chr2R:22324207-22324327 4.5e-05 34_[+2]_78 chr2L:7215825-7215945 4.5e-05 75_[+2]_37 chrX:3358985-3359105 4.5e-05 17_[+2]_95 chr3L:20901130-20901250 4.5e-05 35_[+2]_77 chr3R:31240177-31240297 4.5e-05 38_[+2]_74 chr3R:24201819-24201939 4.5e-05 89_[+2]_23 chr3L:16974954-16975074 7.3e-05 83_[+2]_29 chr3L:17963789-17963909 7.3e-05 43_[+2]_69 chr3R:15667203-15667323 7.3e-05 49_[+2]_63 chr2L:8423973-8424093 7.3e-05 13_[+2]_99 chrX:2653634-2653754 7.3e-05 27_[+2]_85 chr2L:16721420-16721540 7.3e-05 53_[+2]_59 chr3L:19073316-19073436 7.3e-05 43_[+2]_69 chr2R:7064836-7064956 7.3e-05 54_[+2]_58 chr3L:8925799-8925919 0.0001 77_[+2]_35 chr2R:13305651-13305771 0.0001 73_[+2]_39 chr3R:31241480-31241600 0.0001 71_[+2]_41 chr2R:11062383-11062503 0.0001 41_[+2]_71 chr3R:12585844-12585964 0.0001 30_[+2]_82 chr3L:4615206-4615326 0.0001 25_[+2]_87 chr2L:14307658-14307778 0.0001 76_[+2]_36 chr3R:19467573-19467693 0.0001 90_[+2]_22 chr3L:16429587-16429707 0.0001 45_[+2]_67 chr3L:16494919-16495039 0.00013 70_[+2]_42 chr3L:17656813-17656933 0.00013 105_[+2]_7 chr3L:19161436-19161556 0.00013 26_[+2]_86 chrX:18141086-18141206 0.00013 86_[+2]_26 chr2R:18877775-18877895 0.00013 25_[+2]_87 chr3L:5992372-5992492 0.00013 50_[+2]_62 chr3R:27254151-27254271 0.00013 83_[+2]_29 chr2L:16451933-16452053 0.00013 70_[+2]_42 chr3R:31603819-31603939 0.00014 84_[+2]_28 chrX:17509711-17509831 0.00014 31_[+2]_81 chr3R:29066441-29066561 0.00018 10_[+2]_102 chr3R:6182661-6182781 0.00018 37_[+2]_75 chr3R:19613091-19613211 0.00018 111_[+2]_1 chr2R:7451131-7451251 0.00018 40_[+2]_72 chr3R:20975339-20975459 0.00018 35_[+2]_77 chr2L:13801321-13801441 0.00018 17_[+2]_95 chr2L:20852208-20852328 0.00018 29_[+2]_83 chr3L:19847093-19847213 0.00022 60_[+2]_52 chr3R:26908924-26909044 0.00022 33_[+2]_79 chr3R:13766573-13766693 0.00022 107_[+2]_5 chr3R:26539271-26539391 0.00026 9_[+2]_103 chr2L:1214608-1214728 0.00026 70_[+2]_42 chr3R:9448486-9448606 0.00026 67_[+2]_45 chr2L:12049278-12049398 0.00026 27_[+2]_85 chr3L:18143106-18143226 0.00026 3_[+2]_109 chr2R:12441388-12441508 0.00026 95_[+2]_17 chr2R:12729326-12729446 0.00026 49_[+2]_63 chr2L:18496945-18497065 0.00026 4_[+2]_108 chr2L:4475507-4475627 0.00026 51_[+2]_61 chr2L:8285340-8285460 0.00026 31_[+2]_81 chr2L:5085013-5085133 0.0003 78_[+2]_34 chr3R:5287086-5287206 0.0003 36_[+2]_76 chr2L:5338128-5338248 0.00037 76_[+2]_36 chr2R:15531565-15531685 0.00037 112_[+2] chr2L:425615-425735 0.00037 26_[+2]_86 chr3L:4357847-4357967 0.00037 25_[+2]_87 chrX:362261-362381 0.00037 10_[+2]_102 chr2L:18864240-18864360 0.00037 67_[+2]_45 chr3L:19340634-19340754 0.00037 65_[+2]_47 chr2R:12729996-12730116 0.00037 37_[+2]_75 chr3L:20276016-20276136 0.00037 37_[+2]_75 chrX:2462142-2462262 0.00043 12_[+2]_100 chr2L:18335820-18335940 0.00043 6_[+2]_106 chr3R:25544057-25544177 0.00043 107_[+2]_5 chr3R:10150685-10150805 0.00043 60_[+2]_52 chrX:19783629-19783749 0.00043 33_[+2]_79 chr3R:19182992-19183112 0.00043 95_[+2]_17 chr2R:10212488-10212608 0.00045 45_[+2]_67 chr3L:11317531-11317651 0.00047 107_[+2]_5 chr3L:7996486-7996606 0.00047 30_[+2]_82 chr3L:15597168-15597288 0.00047 66_[+2]_46 chr3L:17047831-17047951 0.00052 41_[+2]_71 chr3L:8379310-8379430 0.00052 108_[+2]_4 chr2R:20063346-20063466 0.00054 72_[+2]_40 chr3R:21629895-21630015 0.00067 84_[+2]_28 chr3R:5746787-5746907 0.00067 94_[+2]_18 chr3R:11993404-11993524 0.00067 79_[+2]_33 chr2R:21648185-21648305 0.00067 11_[+2]_101 chr3L:8770958-8771078 0.00067 37_[+2]_75 chrX:8887602-8887722 0.00067 56_[+2]_56 chrX:772765-772885 0.00067 40_[+2]_72 chr2L:1740228-1740348 0.00067 20_[+2]_92 chr3R:29480081-29480201 0.00067 42_[+2]_70 chr2R:14073624-14073744 0.00067 1_[+2]_111 chr3R:18785920-18786040 0.00076 75_[+2]_37 chrX:15617190-15617310 0.00076 61_[+2]_51 chrX:9644935-9645055 0.00076 14_[+2]_98 chr2R:7316743-7316863 0.00076 63_[+2]_49 chr2L:2883609-2883729 0.00076 43_[+2]_69 chrX:8837329-8837449 0.00085 11_[+2]_101 chr2R:23744769-23744889 0.00085 97_[+2]_15 chr3R:31758930-31759050 0.00085 93_[+2]_19 chr2R:18667156-18667276 0.00088 86_[+2]_26 chr3L:14194306-14194426 0.00088 88_[+2]_24 chrX:11442372-11442492 0.00088 34_[+2]_78 chr3L:19191973-19192093 0.0011 37_[+2]_75 chr2R:10485634-10485754 0.0011 32_[+2]_80 chr2R:7756377-7756497 0.0011 59_[+2]_53 chr3R:11991907-11992027 0.0013 70_[+2]_42 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTRY MEME-2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF TTGTTTRY width=8 seqs=128 chr2L:16520041-16520161 ( 69) TTGTTTGC 1 chr3L:20664108-20664228 ( 99) TTGTTTGC 1 chr2R:19413309-19413429 ( 78) TTGTTTGC 1 chr2R:13723383-13723503 ( 23) TTGTTTGC 1 chrX:3811655-3811775 ( 76) TTGTTTGC 1 chrX:17658487-17658607 ( 19) TTGTTTGC 1 chrX:13632859-13632979 ( 80) TTGTTTGC 1 chr2L:16540857-16540977 ( 60) TTGTTTGC 1 chr3R:22573698-22573818 ( 55) TTGTTTGC 1 chr3R:27067488-27067608 ( 30) TTGTTTGC 1 chr3L:13498090-13498210 ( 81) TTGTTTGC 1 chr2R:12741243-12741363 ( 44) TTGTTTGC 1 chr2R:8683526-8683646 ( 46) TTGTTTGC 1 chr3R:30489921-30490041 ( 88) TTGTTTGC 1 chr2R:16820412-16820532 ( 38) TTGTTTGC 1 chr3R:30932224-30932344 ( 40) TTGTTTGC 1 chr2R:15304844-15304964 ( 35) TTGTTTGC 1 chr3L:16431200-16431320 ( 78) TTGTTTGC 1 chr3L:4311457-4311577 ( 4) TTGTTTGC 1 chr3L:12350437-12350557 ( 18) CTGTTTGC 1 chr2L:19998287-19998407 ( 19) GTGTTTGC 1 chr3R:23947152-23947272 ( 43) CTGTTTGC 1 chr3L:6612780-6612900 ( 43) CTGTTTGC 1 chr3R:23445377-23445497 ( 3) CTGTTTGC 1 chr2L:1094815-1094935 ( 51) CTGTTTGC 1 chr3L:6140321-6140441 ( 38) GTGTTTGC 1 chr2R:22324207-22324327 ( 35) GTGTTTGC 1 chr2L:7215825-7215945 ( 76) CTGTTTGC 1 chrX:3358985-3359105 ( 18) GTGTTTGC 1 chr3L:20901130-20901250 ( 36) CTGTTTGC 1 chr3R:31240177-31240297 ( 39) GTGTTTGC 1 chr3R:24201819-24201939 ( 90) CTGTTTGC 1 chr3L:16974954-16975074 ( 84) TTGTTTAC 1 chr3L:17963789-17963909 ( 44) TTGTTTAC 1 chr3R:15667203-15667323 ( 50) TTGTTTAC 1 chr2L:8423973-8424093 ( 14) TTGTTTAC 1 chrX:2653634-2653754 ( 28) TTGTTTAC 1 chr2L:16721420-16721540 ( 54) TTGTTTAC 1 chr3L:19073316-19073436 ( 44) TTGTTTAC 1 chr2R:7064836-7064956 ( 55) TTGTTTAC 1 chr3L:8925799-8925919 ( 78) TTGTTTGT 1 chr2R:13305651-13305771 ( 74) TTGTTTGT 1 chr3R:31241480-31241600 ( 72) TTGTTTGT 1 chr2R:11062383-11062503 ( 42) TTGTTTGT 1 chr3R:12585844-12585964 ( 31) TTGTTTGT 1 chr3L:4615206-4615326 ( 26) TTGTTTGT 1 chr2L:14307658-14307778 ( 77) TTGTTTGT 1 chr3R:19467573-19467693 ( 91) TTGTTTGT 1 chr3L:16429587-16429707 ( 46) TTGTTTGT 1 chr3L:16494919-16495039 ( 71) TTATTTGC 1 chr3L:17656813-17656933 ( 106) TTATTTGC 1 chr3L:19161436-19161556 ( 27) TTATTTGC 1 chrX:18141086-18141206 ( 87) TTATTTGC 1 chr2R:18877775-18877895 ( 26) TTATTTGC 1 chr3L:5992372-5992492 ( 51) TTATTTGC 1 chr3R:27254151-27254271 ( 84) TTATTTGC 1 chr2L:16451933-16452053 ( 71) TTATTTGC 1 chr3R:31603819-31603939 ( 85) TTGTGTGC 1 chrX:17509711-17509831 ( 32) TTGTGTGC 1 chr3R:29066441-29066561 ( 11) CTGTTTAC 1 chr3R:6182661-6182781 ( 38) GTGTTTAC 1 chr3R:19613091-19613211 ( 112) CTGTTTAC 1 chr2R:7451131-7451251 ( 41) GTGTTTAC 1 chr3R:20975339-20975459 ( 36) CTGTTTAC 1 chr2L:13801321-13801441 ( 18) GTGTTTAC 1 chr2L:20852208-20852328 ( 30) CTGTTTAC 1 chr3L:19847093-19847213 ( 61) CTGTTTGT 1 chr3R:26908924-26909044 ( 34) CTGTTTGT 1 chr3R:13766573-13766693 ( 108) GTGTTTGT 1 chr3R:26539271-26539391 ( 10) TTGTTTAT 1 chr2L:1214608-1214728 ( 71) TTGTTTAT 1 chr3R:9448486-9448606 ( 68) TTGTTTAT 1 chr2L:12049278-12049398 ( 28) TTGTTTAT 1 chr3L:18143106-18143226 ( 4) TTGTTTAT 1 chr2R:12441388-12441508 ( 96) TTGTTTAT 1 chr2R:12729326-12729446 ( 50) TTGTTTAT 1 chr2L:18496945-18497065 ( 5) TTGTTTAT 1 chr2L:4475507-4475627 ( 52) TTGTTTAT 1 chr2L:8285340-8285460 ( 32) TTGTTTAT 1 chr2L:5085013-5085133 ( 79) CTATTTGC 1 chr3R:5287086-5287206 ( 37) CTATTTGC 1 chr2L:5338128-5338248 ( 77) TTGTTTGA 1 chr2R:15531565-15531685 ( 113) TTATTTAC 1 chr2L:425615-425735 ( 27) TTGTTTGA 1 chr3L:4357847-4357967 ( 26) TTATTTAC 1 chrX:362261-362381 ( 11) TTATTTAC 1 chr2L:18864240-18864360 ( 68) TTGTTTGA 1 chr3L:19340634-19340754 ( 66) TTATTTAC 1 chr2R:12729996-12730116 ( 38) TTGTTTGA 1 chr3L:20276016-20276136 ( 38) TTGTTTGA 1 chrX:2462142-2462262 ( 13) TTATTTGT 1 chr2L:18335820-18335940 ( 7) TTATTTGT 1 chr3R:25544057-25544177 ( 108) TTATTTGT 1 chr3R:10150685-10150805 ( 61) TTATTTGT 1 chrX:19783629-19783749 ( 34) GTGTGTGC 1 chr3R:19182992-19183112 ( 96) CTGTGTGC 1 chr2R:10212488-10212608 ( 46) TTGTGTAC 1 chr3L:11317531-11317651 ( 108) TTGTGTGT 1 chr3L:7996486-7996606 ( 31) TTGTGTGT 1 chr3L:15597168-15597288 ( 67) TTGTGTGT 1 chr3L:17047831-17047951 ( 42) GTGTTTAT 1 chr3L:8379310-8379430 ( 109) GTGTTTAT 1 chr2R:20063346-20063466 ( 73) TTATGTGC 1 chr3R:21629895-21630015 ( 85) GTGTTTGA 1 chr3R:5746787-5746907 ( 95) TTGTTTTC 1 chr3R:11993404-11993524 ( 80) GTATTTAC 1 chr2R:21648185-21648305 ( 12) GTGTTTGA 1 chr3L:8770958-8771078 ( 38) CTATTTAC 1 chrX:8887602-8887722 ( 57) TTGTTTTC 1 chrX:772765-772885 ( 41) GTATTTAC 1 chr2L:1740228-1740348 ( 21) GTGTTTGA 1 chr3R:29480081-29480201 ( 43) CTATTTAC 1 chr2R:14073624-14073744 ( 2) TTGTTTTC 1 chr3R:18785920-18786040 ( 76) CTATTTGT 1 chrX:15617190-15617310 ( 62) CTATTTGT 1 chrX:9644935-9645055 ( 15) GTATTTGT 1 chr2R:7316743-7316863 ( 64) GTATTTGT 1 chr2L:2883609-2883729 ( 44) TTGTTTAA 1 chrX:8837329-8837449 ( 12) TTATTTAT 1 chr2R:23744769-23744889 ( 98) TTATTTAT 1 chr3R:31758930-31759050 ( 94) GTGTGTAC 1 chr2R:18667156-18667276 ( 87) CTGTGTGT 1 chr3L:14194306-14194426 ( 89) GTGTGTGT 1 chrX:11442372-11442492 ( 35) GTGTGTGT 1 chr3L:19191973-19192093 ( 38) TTATGTAC 1 chr2R:10485634-10485754 ( 33) GTGTTTTC 1 chr2R:7756377-7756497 ( 60) CTGTTTAA 1 chr3R:11991907-11992027 ( 71) ATGTTTGC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTRY MEME-2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 9.52097 E= 2.2e-040 -526 -14 -20 109 -1364 -1364 -1364 175 -35 -1364 189 -1364 -1364 -1364 -1364 175 -1364 -1364 -91 159 -1364 -1364 -1364 175 13 -1364 164 -324 -194 162 -1364 8 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTRY MEME-2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 128 E= 2.2e-040 0.007812 0.179688 0.179688 0.632812 0.000000 0.000000 0.000000 1.000000 0.234375 0.000000 0.765625 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.109375 0.890625 0.000000 0.000000 0.000000 1.000000 0.328125 0.000000 0.640625 0.031250 0.078125 0.609375 0.000000 0.312500 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif TTGTTTRY MEME-2 regular expression -------------------------------------------------------------------------------- TT[GA]TTT[GA][CT] -------------------------------------------------------------------------------- Time 13.84 secs. ******************************************************************************** ******************************************************************************** MOTIF SSSCCVCC MEME-3 width = 8 sites = 20 llr = 193 E-value = 3.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif SSSCCVCC MEME-3 Description -------------------------------------------------------------------------------- Simplified A :::::5:: pos.-specific C 647aa3aa probability G 474::3:: matrix T :::::::: bits 2.3 ** ** 2.1 ** ** 1.9 ** ** 1.6 ** ** Relative 1.4 ***** ** Entropy 1.2 ***** ** (14.0 bits) 0.9 ***** ** 0.7 ***** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel CGCCCACC consensus GCG C sequence G -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCCVCC MEME-3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr2L:425615-425735 18 6.18e-06 CCCCTACTCC CGCCCCCC TTTGTTTGAC chr2L:18335820-18335940 36 6.18e-06 GTTACTGGTG CGCCCACC TCTCGCCCGC chrX:7995072-7995192 2 8.74e-06 T CGCCCGCC GCCTGCTGTC chr3L:11003064-11003184 42 8.74e-06 CACTCCCCGC CGCCCGCC TCCAGCTGCT chr3L:17656813-17656933 41 1.52e-05 ATTGTTTATA GGCCCACC GCACTATCGC chr3L:6140321-6140441 1 1.52e-05 . GGCCCCCC AACAAAAAAC chr2R:21874164-21874284 90 1.52e-05 GACACAACTT GGCCCACC TCTCCGAAAT chrX:9644935-9645055 86 1.52e-05 ATTGCACTGT GGCCCACC TTATCTGCCT chrX:2462142-2462262 92 2.38e-05 CAGCCCCCCT CCCCCCCC TCCCCATAGC chr3R:23947152-23947272 86 3.02e-05 GGCCTGTTAG CGGCCACC GACTGTTTGT chr3R:14284458-14284578 94 3.02e-05 ACTAATAATT CGGCCACC GAAGCAAATA chr2R:13723383-13723503 95 3.27e-05 TTCGAGTGTG CCCCCGCC ACCCGAAAGA chr2R:8683526-8683646 29 3.27e-05 GTGTCATTGC CCCCCGCC GTGCCGTGTT chr2L:470042-470162 106 3.53e-05 TCAATAGGCT CGGCCGCC TGTCATA chr2L:1094815-1094935 66 4.15e-05 TGCACTGTTT GCCCCCCC TCCTCCCCCC chrX:10115673-10115793 12 4.15e-05 GATTTTCAGT GCCCCACC CCCCTTTTTA chr3L:7996486-7996606 108 4.82e-05 CGCTGCGTTG GGGCCCCC AGCAT chr3L:22053495-22053615 71 4.82e-05 CAACGCCACT GGGCCACC AAATTGCATG chr2L:16422860-16422980 79 5.97e-05 CGTTGAGACT CCGCCCCC AAGAGCGTGT chr3R:25544057-25544177 88 5.97e-05 GGATTGTTTT CCGCCACC TTGTGTGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCCVCC MEME-3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr2L:425615-425735 6.2e-06 17_[+3]_95 chr2L:18335820-18335940 6.2e-06 35_[+3]_77 chrX:7995072-7995192 8.7e-06 1_[+3]_111 chr3L:11003064-11003184 8.7e-06 41_[+3]_71 chr3L:17656813-17656933 1.5e-05 40_[+3]_72 chr3L:6140321-6140441 1.5e-05 [+3]_112 chr2R:21874164-21874284 1.5e-05 89_[+3]_23 chrX:9644935-9645055 1.5e-05 85_[+3]_27 chrX:2462142-2462262 2.4e-05 91_[+3]_21 chr3R:23947152-23947272 3e-05 85_[+3]_27 chr3R:14284458-14284578 3e-05 93_[+3]_19 chr2R:13723383-13723503 3.3e-05 94_[+3]_18 chr2R:8683526-8683646 3.3e-05 28_[+3]_84 chr2L:470042-470162 3.5e-05 105_[+3]_7 chr2L:1094815-1094935 4.2e-05 65_[+3]_47 chrX:10115673-10115793 4.2e-05 11_[+3]_101 chr3L:7996486-7996606 4.8e-05 107_[+3]_5 chr3L:22053495-22053615 4.8e-05 70_[+3]_42 chr2L:16422860-16422980 6e-05 78_[+3]_34 chr3R:25544057-25544177 6e-05 87_[+3]_25 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCCVCC MEME-3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF SSSCCVCC width=8 seqs=20 chr2L:425615-425735 ( 18) CGCCCCCC 1 chr2L:18335820-18335940 ( 36) CGCCCACC 1 chrX:7995072-7995192 ( 2) CGCCCGCC 1 chr3L:11003064-11003184 ( 42) CGCCCGCC 1 chr3L:17656813-17656933 ( 41) GGCCCACC 1 chr3L:6140321-6140441 ( 1) GGCCCCCC 1 chr2R:21874164-21874284 ( 90) GGCCCACC 1 chrX:9644935-9645055 ( 86) GGCCCACC 1 chrX:2462142-2462262 ( 92) CCCCCCCC 1 chr3R:23947152-23947272 ( 86) CGGCCACC 1 chr3R:14284458-14284578 ( 94) CGGCCACC 1 chr2R:13723383-13723503 ( 95) CCCCCGCC 1 chr2R:8683526-8683646 ( 29) CCCCCGCC 1 chr2L:470042-470162 ( 106) CGGCCGCC 1 chr2L:1094815-1094935 ( 66) GCCCCCCC 1 chrX:10115673-10115793 ( 12) GCCCCACC 1 chr3L:7996486-7996606 ( 108) GGGCCCCC 1 chr3L:22053495-22053615 ( 71) GGGCCACC 1 chr2L:16422860-16422980 ( 79) CCGCCCCC 1 chr3R:25544057-25544177 ( 88) CCGCCACC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCCVCC MEME-3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.3003 E= 3.4e+000 -1097 160 96 -1097 -1097 82 166 -1097 -1097 172 76 -1097 -1097 234 -1097 -1097 -1097 234 -1097 -1097 59 60 28 -1097 -1097 234 -1097 -1097 -1097 234 -1097 -1097 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCCVCC MEME-3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 3.4e+000 0.000000 0.600000 0.400000 0.000000 0.000000 0.350000 0.650000 0.000000 0.000000 0.650000 0.350000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.450000 0.300000 0.250000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif SSSCCVCC MEME-3 regular expression -------------------------------------------------------------------------------- [CG][GC][CG]CC[ACG]CC -------------------------------------------------------------------------------- Time 19.56 secs. ******************************************************************************** ******************************************************************************** MOTIF GCGCAGCG MEME-4 width = 8 sites = 13 llr = 136 E-value = 2.4e+001 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCGCAGCG MEME-4 Description -------------------------------------------------------------------------------- Simplified A ::3:8::: pos.-specific C :9:a::a1 probability G a17:1a:9 matrix T ::::2::: bits 2.3 * * ** 2.1 * * ** 1.9 ** * *** 1.6 ** * *** Relative 1.4 ** * *** Entropy 1.2 **** *** (15.1 bits) 0.9 **** *** 0.7 ******** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCGCAGCG consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGCG MEME-4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chr3L:16974954-16975074 45 4.19e-06 TTTGGATCCG GCGCAGCG CTGcttttat chr3L:10741298-10741418 112 4.19e-06 TATGAGTGAT GCGCAGCG A chr3L:1496481-1496601 10 4.19e-06 TCCGCGATT GCGCAGCG TTTTACCGTT chr3L:19073316-19073436 68 4.19e-06 CCAGGTCGTA GCGCAGCG AATCCGGTGC chr3L:19340634-19340754 78 4.19e-06 ATTTACCATC GCGCAGCG TTTTCTTCTC chrX:7995072-7995192 81 1.03e-05 AAACAATCGC GCACAGCG CATGCTGAAC chr2L:3345792-3345912 23 1.03e-05 AAGTTGCAGG GCACAGCG AAGGCGAAaa chr2R:16820412-16820532 8 1.03e-05 GGTCAAT GCACAGCG ACGTAGACGG chr2R:18567339-18567459 111 1.44e-05 TAAACAAGCT GCGCTGCG TA chrX:19783629-19783749 54 1.73e-05 TATATACACT GCGCGGCG GCGTTTCGGT chr3R:10150685-10150805 112 2.13e-05 GCAGGCGCAT GCGCAGCC A chrX:19774428-19774548 37 2.57e-05 AGGAGGCGGA GGGCAGCG TTATAATGGC chr3R:27254151-27254271 45 3.17e-05 GTACATATGT GCACTGCG ACATTCTTCG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGCG MEME-4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:16974954-16975074 4.2e-06 44_[+4]_68 chr3L:10741298-10741418 4.2e-06 111_[+4]_1 chr3L:1496481-1496601 4.2e-06 9_[+4]_103 chr3L:19073316-19073436 4.2e-06 67_[+4]_45 chr3L:19340634-19340754 4.2e-06 77_[+4]_35 chrX:7995072-7995192 1e-05 80_[+4]_32 chr2L:3345792-3345912 1e-05 22_[+4]_90 chr2R:16820412-16820532 1e-05 7_[+4]_105 chr2R:18567339-18567459 1.4e-05 110_[+4]_2 chrX:19783629-19783749 1.7e-05 53_[+4]_59 chr3R:10150685-10150805 2.1e-05 111_[+4]_1 chrX:19774428-19774548 2.6e-05 36_[+4]_76 chr3R:27254151-27254271 3.2e-05 44_[+4]_68 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGCG MEME-4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCGCAGCG width=8 seqs=13 chr3L:16974954-16975074 ( 45) GCGCAGCG 1 chr3L:10741298-10741418 ( 112) GCGCAGCG 1 chr3L:1496481-1496601 ( 10) GCGCAGCG 1 chr3L:19073316-19073436 ( 68) GCGCAGCG 1 chr3L:19340634-19340754 ( 78) GCGCAGCG 1 chrX:7995072-7995192 ( 81) GCACAGCG 1 chr2L:3345792-3345912 ( 23) GCACAGCG 1 chr2R:16820412-16820532 ( 8) GCACAGCG 1 chr2R:18567339-18567459 ( 111) GCGCTGCG 1 chrX:19783629-19783749 ( 54) GCGCGGCG 1 chr3R:10150685-10150805 ( 112) GCGCAGCC 1 chrX:19774428-19774548 ( 37) GGGCAGCG 1 chr3R:27254151-27254271 ( 45) GCACTGCG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGCG MEME-4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 11.6156 E= 2.4e+001 -1035 -1035 228 -1035 -1035 222 -142 -1035 4 -1035 175 -1035 -1035 234 -1035 -1035 136 -1035 -142 -94 -1035 -1035 228 -1035 -1035 234 -1035 -1035 -1035 -136 216 -1035 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGCG MEME-4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 13 E= 2.4e+001 0.000000 0.000000 1.000000 0.000000 0.000000 0.923077 0.076923 0.000000 0.307692 0.000000 0.692308 0.000000 0.000000 1.000000 0.000000 0.000000 0.769231 0.000000 0.076923 0.153846 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.076923 0.923077 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCGCAGCG MEME-4 regular expression -------------------------------------------------------------------------------- GC[GA]CAGCG -------------------------------------------------------------------------------- Time 25.17 secs. ******************************************************************************** ******************************************************************************** MOTIF GCTGCWGC MEME-5 width = 8 sites = 18 llr = 177 E-value = 7.4e+000 ******************************************************************************** -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-5 Description -------------------------------------------------------------------------------- Simplified A ::1::3:: pos.-specific C :a1:a::9 probability G a:2a:2a1 matrix T ::6::6:: bits 2.3 ** ** * 2.1 ** ** * 1.9 ** ** ** 1.6 ** ** ** Relative 1.4 ** ** ** Entropy 1.2 ** ** ** (14.2 bits) 0.9 ** ** ** 0.7 ** ** ** 0.5 ******** 0.2 ******** 0.0 -------- Multilevel GCTGCTGC consensus G A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------- chrX:19774428-19774548 106 5.95e-06 tgttgttgtt gctgctgc tgccttt chr3L:11003064-11003184 54 5.95e-06 CCCGCCTCCA GCTGCTGC GTCAATATTG chr2R:6971152-6971272 91 5.95e-06 tgttgttgct gctgctgc tgttgttgtt chr2L:18496945-18497065 24 5.95e-06 TGTGTTTTAA GCTGCTGC TAGGAACGAC chr3L:8946121-8946241 14 5.95e-06 GCCCgatgtt gctgctgc tgttgcagat chrX:3811655-3811775 61 1.01e-05 TTGATTCATA GCGGCTGC CCTGACTTTG chr3R:21271409-21271529 77 1.61e-05 CAAAAGACAA GCTGCAGC ACTTAACATT chr3R:14284458-14284578 17 1.61e-05 TCAGCTGGCA GCTGCAGC CTCTCAAAAC chr3L:2004912-2005032 90 1.61e-05 AGAGGGAAGA GCTGCAGC TTTTAGTCAA chr2R:12729326-12729446 99 2.02e-05 TGTGTATATG GCTGCGGC TTTTAGCTTT chr2L:1913137-1913257 27 2.44e-05 GTCAACATCC GCGGCAGC TGTTGAATTT chr2L:19370204-19370324 54 2.73e-05 TGTGAAAAGG GCGGCGGC GGGGTGACGA chr3L:13498090-13498210 6 2.73e-05 CGGTG GCGGCGGC GACGATGATG chr2R:11062383-11062503 73 3.33e-05 CAGAGCTAAT GCAGCTGC ATTTGAAAGT chr2R:11706349-11706469 25 3.33e-05 TTGGACCACA GCAGCTGC CGATGCTTTG chrX:19783629-19783749 112 3.73e-05 TGCCGTCAAC GCCGCtgc a chr3R:30932224-30932344 23 4.35e-05 ATTACTATTT GCTGCTGG TCCGCTTCTT chr3R:31758930-31759050 52 7.12e-05 ATCGGGCTGG GCTGCAGG GGGCGTGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chrX:19774428-19774548 5.9e-06 105_[+5]_7 chr3L:11003064-11003184 5.9e-06 53_[+5]_59 chr2R:6971152-6971272 5.9e-06 90_[+5]_22 chr2L:18496945-18497065 5.9e-06 23_[+5]_89 chr3L:8946121-8946241 5.9e-06 13_[+5]_99 chrX:3811655-3811775 1e-05 60_[+5]_52 chr3R:21271409-21271529 1.6e-05 76_[+5]_36 chr3R:14284458-14284578 1.6e-05 16_[+5]_96 chr3L:2004912-2005032 1.6e-05 89_[+5]_23 chr2R:12729326-12729446 2e-05 98_[+5]_14 chr2L:1913137-1913257 2.4e-05 26_[+5]_86 chr2L:19370204-19370324 2.7e-05 53_[+5]_59 chr3L:13498090-13498210 2.7e-05 5_[+5]_107 chr2R:11062383-11062503 3.3e-05 72_[+5]_40 chr2R:11706349-11706469 3.3e-05 24_[+5]_88 chrX:19783629-19783749 3.7e-05 111_[+5]_1 chr3R:30932224-30932344 4.4e-05 22_[+5]_90 chr3R:31758930-31759050 7.1e-05 51_[+5]_61 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF GCTGCWGC width=8 seqs=18 chrX:19774428-19774548 ( 106) GCTGCTGC 1 chr3L:11003064-11003184 ( 54) GCTGCTGC 1 chr2R:6971152-6971272 ( 91) GCTGCTGC 1 chr2L:18496945-18497065 ( 24) GCTGCTGC 1 chr3L:8946121-8946241 ( 14) GCTGCTGC 1 chrX:3811655-3811775 ( 61) GCGGCTGC 1 chr3R:21271409-21271529 ( 77) GCTGCAGC 1 chr3R:14284458-14284578 ( 17) GCTGCAGC 1 chr3L:2004912-2005032 ( 90) GCTGCAGC 1 chr2R:12729326-12729446 ( 99) GCTGCGGC 1 chr2L:1913137-1913257 ( 27) GCGGCAGC 1 chr2L:19370204-19370324 ( 54) GCGGCGGC 1 chr3L:13498090-13498210 ( 6) GCGGCGGC 1 chr2R:11062383-11062503 ( 73) GCAGCTGC 1 chr2R:11706349-11706469 ( 25) GCAGCTGC 1 chrX:19783629-19783749 ( 112) GCCGCTGC 1 chr3R:30932224-30932344 ( 23) GCTGCTGG 1 chr3R:31758930-31759050 ( 52) GCTGCAGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 8 n= 28250 bayes= 12.0201 E= 7.4e+000 -1081 -1081 228 -1081 -1081 234 -1081 -1081 -143 -183 11 104 -1081 -1081 228 -1081 -1081 234 -1081 -1081 -11 -1081 -31 91 -1081 -1081 228 -1081 -1081 217 -89 -1081 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 8 nsites= 18 E= 7.4e+000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.111111 0.055556 0.222222 0.611111 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.277778 0.000000 0.166667 0.555556 0.000000 0.000000 1.000000 0.000000 0.000000 0.888889 0.111111 0.000000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif GCTGCWGC MEME-5 regular expression -------------------------------------------------------------------------------- GC[TG]GC[TA]GC -------------------------------------------------------------------------------- Time 31.23 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- chr3L:20276016-20276136 3.32e-03 120 chr2L:20852208-20852328 2.60e-03 52_[+1(3.31e-05)]_60 chr2R:20063346-20063466 1.58e-01 120 chr2R:7064836-7064956 1.95e-01 54_[+2(7.30e-05)]_58 chr2R:12729996-12730116 1.48e-02 120 chr2L:8285340-8285460 9.49e-02 120 chrX:11442372-11442492 1.52e-01 120 chr3R:19182992-19183112 4.64e-01 120 chr2L:1400231-1400351 7.78e-01 120 chr3L:16429587-16429707 3.63e-04 78_[+1(3.31e-05)]_34 chr2R:11706349-11706469 2.89e-03 24_[+5(3.33e-05)]_53_[+1(5.25e-05)]_\ 27 chr2L:13801321-13801441 1.57e-01 120 chr3L:4311457-4311577 7.93e-02 3_[+2(1.91e-05)]_109 chr3R:5287086-5287206 5.65e-02 120 chr2L:2883609-2883729 1.83e-01 120 chr3R:15926075-15926195 2.31e-01 40_[+1(3.31e-05)]_72 chr3R:24201819-24201939 5.89e-03 89_[+2(4.52e-05)]_23 chr3R:19467573-19467693 1.02e-01 120 chrX:19783629-19783749 1.19e-04 53_[+4(1.73e-05)]_50_[+5(3.73e-05)]_\ 1 chr3R:10150685-10150805 5.27e-04 111_[+4(2.13e-05)]_1 chr2L:14307658-14307778 5.28e-02 120 chr2L:4475507-4475627 4.04e-02 120 chr2R:11084966-11085086 4.98e-01 120 chr2L:18717489-18717609 7.02e-02 120 chr3R:6203133-6203253 4.62e-02 120 chr3R:20975339-20975459 6.95e-02 120 chr3L:19340634-19340754 5.19e-03 77_[+4(4.19e-06)]_35 chr3L:19073316-19073436 1.90e-04 43_[+2(7.30e-05)]_16_[+4(4.19e-06)]_\ 45 chr2R:10673350-10673470 2.88e-01 120 chrX:22509198-22509318 4.18e-01 120 chr3L:4615206-4615326 5.75e-03 69_[+1(3.31e-05)]_43 chrX:9911889-9912009 5.34e-01 120 chr3L:14536207-14536327 2.84e-02 105_[+1(3.31e-05)]_7 chr3L:22053495-22053615 1.06e-02 70_[+3(4.82e-05)]_42 chr2R:16785651-16785771 3.81e-02 120 chrX:10043998-10044118 3.11e-01 120 chr3R:12585844-12585964 4.79e-03 120 chr3R:24301581-24301701 1.13e-01 120 chr3L:2004912-2005032 1.48e-02 89_[+5(1.61e-05)]_23 chr2R:8045745-8045865 1.78e-01 120 chr3L:8946121-8946241 2.70e-03 13_[+5(5.95e-06)]_19_[+5(7.55e-05)]_\ 72 chr2L:1913137-1913257 9.23e-03 26_[+5(2.44e-05)]_86 chr3L:1496481-1496601 2.79e-02 9_[+4(4.19e-06)]_103 chr2R:14073624-14073744 2.26e-04 41_[+5(7.98e-05)]_49_[+4(9.30e-05)]_\ 14 chr2R:7316743-7316863 1.26e-01 120 chrX:9644935-9645055 5.76e-04 85_[+3(1.52e-05)]_27 chr3L:16431200-16431320 4.38e-02 55_[+2(7.30e-05)]_14_[+2(1.91e-05)]_\ 35 chrX:15617190-15617310 5.13e-02 71_[+1(3.31e-05)]_41 chr3R:23876830-23876950 2.12e-01 120 chrX:17509711-17509831 1.21e-03 120 chr2L:16451933-16452053 8.55e-02 120 chr3L:10741298-10741418 5.38e-03 111_[+4(4.19e-06)]_1 chr2R:15529989-15530109 1.86e-01 120 chr3R:27254151-27254271 3.48e-04 44_[+4(3.17e-05)]_68 chr3L:16486618-16486738 6.25e-01 120 chrX:2192006-2192126 1.60e-01 120 chr2L:5085013-5085133 1.81e-01 120 chr3L:17808954-17809074 5.85e-02 120 chr2L:18496945-18497065 2.43e-03 23_[+5(5.95e-06)]_89 chr2R:20101028-20101148 3.68e-02 120 chr2R:17272600-17272720 3.77e-02 120 chr2R:15304844-15304964 7.94e-03 5_[+4(7.22e-05)]_21_[+2(1.91e-05)]_\ 78 chr3L:5992372-5992492 1.70e-02 120 chr2L:20004447-20004567 1.03e-01 120 chr2R:18877775-18877895 2.83e-02 120 chr3R:30932224-30932344 5.63e-05 22_[+5(4.35e-05)]_9_[+2(1.91e-05)]_\ 4_[+1(5.25e-05)]_61 chr2R:16820412-16820532 1.37e-04 7_[+4(1.03e-05)]_22_[+2(1.91e-05)]_\ 75 chr2R:12729326-12729446 2.44e-03 98_[+5(2.02e-05)]_14 chr2L:12509602-12509722 3.43e-01 120 chr3R:30489921-30490041 2.94e-03 42_[+2(7.30e-05)]_43_[+4(1.03e-05)]_\ 19 chr3R:9889098-9889218 4.16e-01 120 chr2R:10212488-10212608 6.07e-02 120 chr3R:22261151-22261271 4.41e-01 120 chr3R:13766573-13766693 6.64e-02 120 chr2R:21874164-21874284 7.67e-03 89_[+3(1.52e-05)]_23 chr4:393235-393355 1.05e-01 75_[+4(8.25e-05)]_37 chr2L:3888318-3888438 3.41e-01 120 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chr3L:18143106-18143226 6.20e-02 120 chrX:19774428-19774548 2.04e-03 36_[+4(2.57e-05)]_25_[+5(5.95e-06)]_\ 28_[+5(5.95e-06)]_7 chr2L:1218167-1218287 3.29e-01 120 chr3L:21259439-21259559 5.19e-02 120 chrX:13820472-13820592 6.47e-02 87_[+1(3.31e-05)]_25 chr3L:7996486-7996606 1.48e-03 107_[+3(4.82e-05)]_5 chr2L:16540857-16540977 3.99e-04 59_[+2(1.91e-05)]_53 chr3R:21271409-21271529 1.99e-02 76_[+5(1.61e-05)]_36 chr3R:26908924-26909044 1.49e-03 13_[+4(6.64e-05)]_99 chr3L:8770958-8771078 1.89e-03 78_[+1(3.31e-05)]_34 chr3R:31241480-31241600 1.22e-03 87_[+1(3.31e-05)]_25 chr2R:9269522-9269642 5.72e-01 120 chr2R:21648185-21648305 1.90e-01 120 chr2L:12049278-12049398 6.23e-02 120 chrX:19375619-19375739 1.13e-01 120 chr2L:470042-470162 6.37e-03 105_[+3(3.53e-05)]_7 chr3R:8306740-8306860 4.23e-02 120 chr2R:13305651-13305771 5.24e-02 120 chrX:13632859-13632979 2.22e-02 24_[+2(4.52e-05)]_47_[+2(1.91e-05)]_\ 33 chr3L:19847093-19847213 6.29e-02 120 chr3L:19670662-19670782 2.47e-01 120 chrX:2653634-2653754 1.72e-02 27_[+2(7.30e-05)]_85 chrX:17481879-17481999 6.25e-01 120 chr2L:1094815-1094935 9.88e-04 50_[+2(4.52e-05)]_7_[+3(4.15e-05)]_\ 5_[+3(8.24e-05)]_34 chr3R:31127616-31127736 5.78e-01 120 chr3L:8925799-8925919 3.94e-01 120 chr3L:8379310-8379430 1.20e-02 65_[+1(3.31e-05)]_47 chrX:362261-362381 4.08e-02 120 chr2L:19370204-19370324 3.88e-03 53_[+5(2.73e-05)]_59 chr3R:9448486-9448606 2.42e-01 120 chr2L:5610210-5610330 1.74e-01 120 chr3L:4357847-4357967 1.54e-01 120 chrX:17658487-17658607 9.29e-03 18_[+2(1.91e-05)]_94 chrX:3811655-3811775 2.23e-04 60_[+5(1.01e-05)]_7_[+2(1.91e-05)]_\ 37 chr3R:29757332-29757452 1.15e-01 54_[+1(5.25e-05)]_58 chr2R:13723383-13723503 3.26e-03 22_[+2(1.91e-05)]_11_[+2(4.52e-05)]_\ 45_[+3(3.27e-05)]_18 chr2R:22546702-22546822 2.05e-02 120 chr2L:8423973-8424093 3.01e-02 13_[+2(7.30e-05)]_99 chr3R:8964122-8964242 7.58e-01 120 chr3R:15667203-15667323 7.02e-03 49_[+2(7.30e-05)]_63 chr2R:14314481-14314601 1.26e-01 120 chr2R:21848622-21848742 5.58e-01 120 chr2L:5338775-5338895 5.27e-01 120 chr3R:19613091-19613211 2.53e-02 120 chr3L:17963789-17963909 8.77e-03 43_[+2(7.30e-05)]_69 chr3R:23445377-23445497 5.58e-03 2_[+2(4.52e-05)]_37_[+1(3.31e-05)]_\ 65 chr2R:23744769-23744889 2.03e-01 120 chrX:8837329-8837449 1.78e-01 120 chr3L:6612780-6612900 5.56e-03 42_[+2(4.52e-05)]_70 chr2R:7167910-7168030 1.26e-01 120 chr2L:425615-425735 3.51e-03 17_[+3(6.18e-06)]_95 chrX:6638240-6638360 7.88e-01 120 chr3R:23947152-23947272 2.80e-04 42_[+2(4.52e-05)]_35_[+3(3.02e-05)]_\ 27 chr3R:6241339-6241459 5.41e-01 120 chrX:6720121-6720241 3.98e-02 120 chr3L:517400-517520 9.14e-01 120 chr3R:10186188-10186308 7.17e-01 120 chr3R:11993404-11993524 4.54e-02 120 chr3R:6401074-6401194 3.61e-01 120 chr2L:7525399-7525519 4.11e-01 120 chrX:18533372-18533492 1.00e+00 120 chr3L:11317531-11317651 1.83e-01 120 chr3R:5746787-5746907 2.38e-01 120 chr2L:19998287-19998407 7.11e-03 1_[+1(3.31e-05)]_9_[+2(4.52e-05)]_\ 94 chr3R:6182661-6182781 4.23e-02 70_[+2(7.30e-05)]_42 chr3R:29066441-29066561 1.91e-01 120 chr2L:856144-856264 1.95e-01 120 chr3L:7859859-7859979 1.94e-01 52_[+1(5.25e-05)]_60 chr3R:29717670-29717790 9.65e-01 120 chr3L:18838010-18838130 1.96e-01 120 chr2L:1214608-1214728 3.03e-01 120 chr3L:3755777-3755897 4.46e-02 65_[+1(3.31e-05)]_47 chr2R:15531565-15531685 9.90e-02 120 chr2R:19413309-19413429 1.08e-03 77_[+2(1.91e-05)]_35 chr2R:17714530-17714650 5.42e-01 120 chr3L:4534041-4534161 3.43e-01 120 chrX:335063-335183 5.77e-01 120 chr3L:19191973-19192093 5.75e-03 28_[+4(7.22e-05)]_84 chr3L:20664108-20664228 4.46e-02 46_[+2(4.52e-05)]_44_[+2(1.91e-05)]_\ 14 chr2L:10497530-10497650 2.68e-01 120 chr3R:26539271-26539391 1.03e-03 48_[+5(8.91e-05)]_64 chrX:7995072-7995192 1.42e-05 1_[+3(8.74e-06)]_58_[+1(5.25e-05)]_\ 5_[+4(1.03e-05)]_32 chr3L:1690836-1690956 2.46e-02 73_[+1(3.31e-05)]_39 chr2L:1926034-1926154 5.82e-01 120 chr3R:31603819-31603939 3.61e-03 68_[+1(3.31e-05)]_44 chr2L:16422860-16422980 3.13e-01 78_[+3(5.97e-05)]_34 chr3L:17656813-17656933 3.20e-04 40_[+3(1.52e-05)]_72 chr2L:5338128-5338248 2.81e-02 120 chrX:2462142-2462262 2.84e-03 91_[+3(2.38e-05)]_21 chrX:13088694-13088814 1.90e-01 120 chr2L:2864717-2864837 2.64e-03 50_[+1(5.25e-05)]_62 chr3L:12350437-12350557 6.30e-03 17_[+2(4.52e-05)]_95 chr2R:7756377-7756497 1.37e-02 9_[+1(3.31e-05)]_103 chr2R:15802151-15802271 4.15e-02 120 chr2R:17274131-17274251 4.04e-02 41_[+1(5.25e-05)]_71 chr2R:14031237-14031357 5.46e-02 45_[+1(5.25e-05)]_67 chrX:13570378-13570498 2.09e-01 120 chr2R:24321797-24321917 1.21e-01 120 chr3R:14744531-14744651 2.92e-01 120 chr3R:27946705-27946825 4.32e-01 120 chr3L:16974954-16975074 6.65e-04 44_[+4(4.19e-06)]_31_[+2(7.30e-05)]_\ 29 chr3R:29699335-29699455 9.99e-01 120 chr2L:20327518-20327638 6.96e-03 102_[+1(3.31e-05)]_10 chr3R:21629895-21630015 1.67e-02 120 chr3L:16494919-16495039 8.36e-02 120 chrX:12889284-12889404 3.21e-02 120 chr2L:16520041-16520161 1.53e-01 68_[+2(1.91e-05)]_44 chrX:15591757-15591877 1.20e-01 120 chr3L:17047831-17047951 8.66e-02 120 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because requested number of motifs (5) found. ******************************************************************************** CPU: c28n02.farnam.hpc.yale.internal ********************************************************************************