# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_zen/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/zen.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/zen.fasta (Sat Feb 12 15:50:55 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.253 C 0.245 G 0.247 T 0.255


MOTIF CTAATTGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTAATTGC   GCAATTAG          9          0   1.8e-003   1.2e+001
#         CTAATTGC   GCAATTAG          9          0   1.8e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.2e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGTCATTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTCATTA   TAATGACT          7          0   7.5e-003   5.0e+001
#         AGTCATTA   TAATGACT          7          0   7.5e-003   5.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 5.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAGCGGGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCGGGA   TCCCGCTG          7          0   7.5e-003   5.0e+001
#         CAGCGGGA   TCCCGCTG          7          0   7.5e-003   5.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 5.0e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACACACAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACACAC   GTGTGTGT          6          0   1.5e-002   9.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAAAGGAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAAGGAC   GTCCTTTG          6          0   1.5e-002   9.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.9e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.29 seconds