# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_vfl/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/vfl.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/vfl.fasta (Sat Feb 12 15:50:55 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.288 C 0.219 G 0.214 T 0.279


MOTIF CTACCTGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTACCTGC   GCAGGTAG          8          0   3.7e-003   2.5e+001
#         CTACCTGC   GCAGGTAG          8          0   3.7e-003   2.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.5e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGTGTTGG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGTTGG   CCAACACT          6          0   1.5e-002   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.0e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAATATCG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATCG   CGATATTT          5          0   3.1e-002   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF TAAATAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAATAAA   TTTATTTA          5          0   3.1e-002   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TATCGATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TATCGATA   TATCGATA          5          0   3.1e-002   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 2.0e+002
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.43 seconds