# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_usp/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/usp.fasta
#   positives: 17 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/usp.fasta (Sat Feb 12 15:50:55 EST 2022)
#   negatives: 17 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:11 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.322 C 0.199 G 0.175 T 0.304


MOTIF AAAATAGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATAGC   GCTATTTT          2          0   2.4e-001   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATTAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATTAT   ATAATTTT          2          0   2.4e-001   1.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.3e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAACTAAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACTAAT   ATTAGTTT          2          0   2.4e-001   1.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.2e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAATTTTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATTTTA   TAAAATTT          2          0   2.4e-001   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATAATAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAATAA   TTATTATT          2          0   2.4e-001   1.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.20 seconds