# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_unpg/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/unpg.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/unpg.fasta (Sat Feb 12 15:50:55 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.374 C 0.124 G 0.127 T 0.375


MOTIF AATATATA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATATA   TATATATT         16          3   1.9e-003   9.7e+000
#         AATATATA   TATATATT         16          3   1.9e-003   9.7e+000

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 9.7e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TTTCAAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTTCAAAA   TTTTGAAA          7          0   7.5e-003   3.8e+001
#         TTTCAAAA   TTTTGAAA          7          0   7.5e-003   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 3.8e+001
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATATATT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATATT   AATATATT          6          0   1.5e-002   7.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 7.7e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATAAAAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAAAAAC   GTTTTTAT          8          1   1.9e-002   9.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 9.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AATTAGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTAGAA   TTCTAATT          5          0   3.1e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.15 seconds