# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_twi/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/twi.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/twi.fasta (Sat Feb 12 15:50:55 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c26n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.253 C 0.245 G 0.235 T 0.267


MOTIF CATRTGTK DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATRTGTK   MACAYATG         64          3   4.9e-018   3.1e-014
#         CATGTGTG   CACACATG         24          1   4.5e-007   2.9e-003
#         CATGTGTT   AACACATG         21          1   3.7e-006   2.3e-002
#         CATATGTT   AACATATG         14          0   5.1e-005   3.2e-001
#         CATATGTG   CACATATG         11          1   2.9e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 69 E= 3.1e-014
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.347826 0.000000 0.652174 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.507246 0.492754


MOTIF AACATGTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACATGTG   CACATGTT          6          0   1.5e-002   9.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.0e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATGCTGCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGCTGCC   GGCAGCAT          6          0   1.5e-002   8.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.9e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CACATGTG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACATGTG   CACATGTG          6          0   1.5e-002   8.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.9e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CATCTGGA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATCTGGA   TCCAGATG          6          0   1.5e-002   8.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.9e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.23 seconds