# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_ttk/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/ttk.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/ttk.fasta (Sat Feb 12 15:50:55 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.231 C 0.260 G 0.274 T 0.235


MOTIF CCAGCACC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAGCACC   GGTGCTGG          5          0   3.1e-002   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.1e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGCCGCCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCCGCCA   TGGCGGCT          4          0   6.2e-002   4.3e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.3e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGAGGTA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGAGGTA   TACCTCCT          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGCCCAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGCCCAT   ATGGGCAT          4          0   6.2e-002   4.2e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.2e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAATAAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATAAGC   GCTTATTT          3          0   1.2e-001   8.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 8.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.47 seconds