# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_trem/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/trem.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/trem.fasta (Sat Feb 12 15:50:55 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.304 C 0.192 G 0.202 T 0.303


MOTIF RGTTGGCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    RGTTGGCA   TGCCAACY         55          0   9.8e-019   6.1e-015
#         AGTTGGCA   TGCCAACT         47          0   6.5e-016   4.0e-012
#         GGTTGGCA   TGCCAACC          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 6.1e-015
0.854545 0.000000 0.145455 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATAAATA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAAATA   TATTTATT          7          0   7.5e-003   4.4e+001
#         AATAAATA   TATTTATT          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.4e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGCTGCCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCTGCCA   TGGCAGCT          7          0   7.5e-003   4.4e+001
#         AGCTGCCA   TGGCAGCT          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATCGATAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATAA   TTATCGAT          7          0   7.5e-003   4.4e+001
#         ATCGATAA   TTATCGAT          7          0   7.5e-003   4.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.4e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGCTGCCA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGCTGCCA   TGGCAGCC          6          0   1.5e-002   8.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.8e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.61 seconds