# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_stwl/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/stwl.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/stwl.fasta (Sat Feb 12 15:50:54 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.276 C 0.211 G 0.229 T 0.283


MOTIF AGTGTGRC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGTGRC   GYCACACT         34          0   1.7e-011   1.1e-007
#         AGTGTGAC   GTCACACT         24          0   3.3e-008   2.2e-004
#         AGTGTGGC   GCCACACT         12          0   2.1e-004   1.4e+000

letter-probability matrix: alength= 4 w= 8 nsites= 37 E= 1.1e-007
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.648649 0.000000 0.351351 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF CAACACTR DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAACACTR   YAGTGTTG         20          0   6.4e-007   4.1e-003
#         CAACACTG   CAGTGTTG         13          0   1.0e-004   6.6e-001
#         CAACACTA   TAGTGTTG          7          0   7.5e-003   4.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 4.1e-003
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.350000 0.000000 0.650000 0.000000


MOTIF AATCGATA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATCGATA   TATCGATT          7          0   7.5e-003   4.6e+001
#         AATCGATA   TATCGATT          7          0   7.5e-003   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GAGTTGCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGTTGCC   GGCAACTC          6          0   1.5e-002   9.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.3e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGCATTGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCATTGC   GCAATGCT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.46 seconds