# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_sqz/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/sqz.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/sqz.fasta (Sat Feb 12 15:50:54 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.310 C 0.195 G 0.188 T 0.307


MOTIF AAAAACAG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAACAG   CTGTTTTT         12          0   2.1e-004   1.2e+000
#         AAAAACAG   CTGTTTTT         12          0   2.1e-004   1.2e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 1.2e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAAAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAAAA   TTTTTTTT         81         51   1.6e-003   8.9e+000
#         AAAAAAAA   TTTTTTTT         81         51   1.6e-003   8.9e+000

letter-probability matrix: alength= 4 w= 8 nsites= 86 E= 8.9e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACAAACAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACAAACAA   TTGTTTGT          9          1   1.0e-002   5.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACACACAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACACACAT   ATGTGTGT          6          0   1.5e-002   8.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.2e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CAACAACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAACAACA   TGTTGTTG         10          2   1.8e-002   9.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 9.7e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.93 seconds