# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_slp2/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/slp2.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/slp2.fasta (Sat Feb 12 15:50:54 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.311 C 0.179 G 0.185 T 0.324


MOTIF AAATATAT DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATATAT   ATATATTT          7          0   7.5e-003   4.9e+001
#         AAATATAT   ATATATTT          7          0   7.5e-003   4.9e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.9e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATTGAAAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTGAAAA   TTTTCAAT          7          0   7.5e-003   4.8e+001
#         ATTGAAAA   TTTTCAAT          7          0   7.5e-003   4.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.8e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTTTTCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTTTCA   TGAAAAAT          8          2   5.3e-002   3.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 3.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAATAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATAAA   TTTATTTT          6          1   6.1e-002   3.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGTGGTA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTGGTA   TACCACTT          4          0   6.2e-002   3.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.9e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.98 seconds