# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_sd/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/sd.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/sd.fasta (Sat Feb 12 15:50:54 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:56 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.290 C 0.210 G 0.214 T 0.286


MOTIF GCATTCCR DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCATTCCR   YGGAATGC         17          0   5.8e-006   3.7e-002
#         GCATTCCA   TGGAATGC         10          0   8.9e-004   5.7e+000
#         GCATTCCG   CGGAATGC          8          0   3.7e-003   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 17 E= 3.7e-002
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.529412 0.000000 0.470588 0.000000


MOTIF ACATTCCW DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATTCCW   WGGAATGT         20          1   7.3e-006   4.6e-002
#         ACATTCCT   AGGAATGT         10          0   8.9e-004   5.6e+000
#         ACATTCCA   TGGAATGT         10          1   5.4e-003   3.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 4.6e-002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.500000 0.000000 0.000000 0.500000


MOTIF AAATTCTT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATTCTT   AAGAATTT          8          0   3.7e-003   2.3e+001
#         AAATTCTT   AAGAATTT          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAATTCCG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATTCCG   CGGAATTT          7          0   7.5e-003   4.6e+001
#         AAATTCCG   CGGAATTT          7          0   7.5e-003   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AATTCCAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTCCAA   TTGGAATT          7          0   7.5e-003   4.6e+001
#         AATTCCAA   TTGGAATT          7          0   7.5e-003   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.25 seconds