# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_scrt/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/scrt.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/scrt.fasta (Sat Feb 12 15:50:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n07.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:58 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.253 C 0.246 G 0.253 T 0.248


MOTIF CYTGTTGM DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CYTGTTGM   KCAACARG         65          2   1.7e-019   1.0e-015
#         CTTGTTGC   GCAACAAG         20          0   6.4e-007   3.9e-003
#         CCTGTTGC   GCAACAGG         23          1   9.2e-007   5.5e-003
#         CTTGTTGA   TCAACAAG         12          0   2.1e-004   1.3e+000
#         CCTGTTGA   TCAACAGG         11          1   2.9e-003   1.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 66 E= 1.0e-015
0.000000 1.000000 0.000000 0.000000
0.000000 0.515152 0.000000 0.484848
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.348485 0.651515 0.000000 0.000000


MOTIF AVCTGTTG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AVCTGTTG   CAACAGBT         40          1   3.8e-012   2.2e-008
#         AACTGTTG   CAACAGTT         20          1   7.3e-006   4.2e-002
#         ACCTGTTG   CAACAGGT         10          0   8.9e-004   5.1e+000
#         AGCTGTTG   CAACAGCT         10          0   8.9e-004   5.1e+000

letter-probability matrix: alength= 4 w= 8 nsites= 41 E= 2.2e-008
1.000000 0.000000 0.000000 0.000000
0.487805 0.243902 0.268293 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AACAAGTG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAAGTG   CACTTGTT          9          1   1.0e-002   5.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAGCAGCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAGCAGCA   TGCTGCTG          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGAGCAAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGAGCAAC   GTTGCTCG          5          0   3.1e-002   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.36 seconds