# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_pzg/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/pzg.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/pzg.fasta (Sat Feb 12 15:50:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.278 C 0.225 G 0.225 T 0.272


MOTIF ATCGATAD DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCGATAD   HTATCGAT         39          3   7.1e-010   4.5e-006
#         ATCGATAG   CTATCGAT         16          0   1.2e-005   7.6e-002
#         ATCGATAA   TTATCGAT         19          1   1.5e-005   9.3e-002
#         ATCGATAT   ATATCGAT         12          2   5.9e-003   3.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 42 E= 4.5e-006
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.357143 0.000000 0.357143 0.285714


MOTIF GGTCACAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTCACAC   GTGTGACC         20          0   6.4e-007   3.9e-003
#         GGTCACAC   GTGTGACC         20          0   6.4e-007   3.9e-003

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 3.9e-003
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTATTTTY DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTATTTTY   RAAAATAC         14          0   5.1e-005   3.0e-001
#         GTATTTTC   GAAAATAC          7          0   7.5e-003   4.5e+001
#         GTATTTTT   AAAAATAC          7          0   7.5e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 14 E= 3.0e-001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.500000 0.000000 0.500000


MOTIF AAATACCA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATACCA   TGGTATTT         12          1   1.5e-003   9.0e+000
#         AAATACCA   TGGTATTT         12          1   1.5e-003   9.0e+000

letter-probability matrix: alength= 4 w= 8 nsites= 12 E= 9.0e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTGGCAGC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGGCAGC   GCTGCCAG          9          0   1.8e-003   1.1e+001
#         CTGGCAGC   GCTGCCAG          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.34 seconds