# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_prd/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/prd.fasta
#   positives: 23 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/prd.fasta (Sat Feb 12 15:50:53 EST 2022)
#   negatives: 23 from shuffled positives
#        host: c23n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.317 C 0.193 G 0.171 T 0.319


MOTIF AGGGTTTG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGGTTTG   CAAACCCT          2          0   2.4e-001   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ATCACTTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCACTTA   TAAGTGAT          2          0   2.4e-001   1.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.7e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGTCTAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGTCTAC   GTAGACAT          2          0   2.4e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATTAGAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTAGAAA   TTTCTAAT          2          0   2.4e-001   1.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CGCTCGCC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CGCTCGCC   GGCGAGCG          2          0   2.4e-001   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.5e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.20 seconds