# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_pnt/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/pnt.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/pnt.fasta (Sat Feb 12 15:50:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.321 C 0.180 G 0.174 T 0.325


MOTIF TAAAAGTA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAAAAGTA   TACTTTTA          6          0   1.5e-002   9.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.7e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATGATTTA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGATTTA   TAAATCAT          5          0   3.1e-002   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTGAAAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTGAAAT   ATTTCAAT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF TTCGAAAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TTCGAAAA   TTTTCGAA          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ATTAAAAT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTAAAAT   ATTTTAAT          6          1   6.1e-002   3.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 3.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.42 seconds