# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_phol/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/phol.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/phol.fasta (Sat Feb 12 15:50:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.262 C 0.231 G 0.231 T 0.277


MOTIF AANATGGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AANATGGC   GCCATNTT         87          2   1.0e-027   6.5e-024
#         AAAATGGC   GCCATTTT         41          1   1.8e-012   1.1e-008
#         AAGATGGC   GCCATCTT         20          0   6.4e-007   4.0e-003
#         AATATGGC   GCCATATT         16          0   1.2e-005   7.4e-002
#         AACATGGC   GCCATGTT         12          1   1.5e-003   9.5e+000

letter-probability matrix: alength= 4 w= 8 nsites= 91 E= 6.5e-024
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.472527 0.131868 0.219780 0.175824
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATATCGAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATATCGAT   ATCGATAT          8          0   3.7e-003   2.1e+001
#         ATATCGAT   ATCGATAT          8          0   3.7e-003   2.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF GAGCGAGA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAGCGAGA   TCTCGCTC          7          0   7.5e-003   4.3e+001
#         GAGCGAGA   TCTCGCTC          7          0   7.5e-003   4.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.3e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACAGCTG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAGCTG   CAGCTGTT          6          0   1.5e-002   8.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CATACACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CATACACA   TGTGTATG          6          0   1.5e-002   8.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.5e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.28 seconds