# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_pfk/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/pfk.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/pfk.fasta (Sat Feb 12 15:50:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n08.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:55 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.249 C 0.245 G 0.243 T 0.263


MOTIF GGAAYGRA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGAAYGRA   TYCRTTCC         71          6   1.2e-017   7.1e-014
#         GGAACGGA   TCCGTTCC         34          2   3.3e-009   1.9e-005
#         GGAATGGA   TCCATTCC         24          2   3.2e-006   1.9e-002
#         GGAATGAA   TTCATTCC         13          1   8.0e-004   4.7e+000
#         GGAACGAA   TTCGTTCC         15          2   1.0e-003   5.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 83 E= 7.1e-014
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.614458 0.000000 0.385542
0.000000 0.000000 1.000000 0.000000
0.325301 0.000000 0.674699 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAYGAAAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAYGAAAC   GTTTCRTT         20          1   7.3e-006   4.1e-002
#         AATGAAAC   GTTTCATT          9          0   1.8e-003   1.0e+001
#         AACGAAAC   GTTTCGTT         11          1   2.9e-003   1.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 20 E= 4.1e-002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.550000 0.000000 0.450000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ACCGTTCC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCGTTCC   GGAACGGT          8          0   3.7e-003   2.0e+001
#         ACCGTTCC   GGAACGGT          8          0   3.7e-003   2.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.0e+001
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AGTGGAAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGTGGAAC   GTTCCACT          7          0   7.5e-003   4.1e+001
#         AGTGGAAC   GTTCCACT          7          0   7.5e-003   4.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 4.1e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GAATCGAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GAATCGAA   TTCGATTC          7          0   7.5e-003   4.0e+001
#         GAATCGAA   TTCGATTC          7          0   7.5e-003   4.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.0e+001
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.88 seconds