# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_pan/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/pan.fasta
#   positives: 5 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/pan.fasta (Sat Feb 12 15:50:53 EST 2022)
#   negatives: 5 from shuffled positives
#        host: c22n09.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.373 C 0.216 G 0.132 T 0.279


MOTIF AAAAAAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAAAA   TTTTTTTT          1          0   5.0e-001   8.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 8.3e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAAGAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAGAG   CTCTTTTT          1          0   5.0e-001   7.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 7.5e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAACCAAC DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACCAAC   GTTGGTTT          1          0   5.0e-001   6.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 6.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAACCCCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACCCCC   GGGGGTTT          1          0   5.0e-001   6.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 6.0e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAGAATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGAATA   TATTCTTT          1          0   5.0e-001   5.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 1 E= 5.7e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.24 seconds