# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_pad/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/pad.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/pad.fasta (Sat Feb 12 15:50:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:12 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.264 C 0.239 G 0.224 T 0.273


MOTIF GGGGAAAW DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGGGAAAW   WTTTCCCC         22          0   1.5e-007   9.6e-004
#         GGGGAAAT   ATTTCCCC         12          0   2.1e-004   1.4e+000
#         GGGGAAAA   TTTTCCCC         10          0   8.9e-004   5.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 22 E= 9.6e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.454545 0.000000 0.000000 0.545455


MOTIF AAGGGGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGGGAA   TTCCCCTT          9          0   1.8e-003   1.2e+001
#         AAGGGGAA   TTCCCCTT          9          0   1.8e-003   1.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 1.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF TAACGGCA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAACGGCA   TGCCGTTA          8          0   3.7e-003   2.3e+001
#         TAACGGCA   TGCCGTTA          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.3e+001
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGAGGGGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGAGGGGA   TCCCCTCT          6          0   1.5e-002   9.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.5e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGGGGTAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGGGGTAA   TTACCCCT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.28 seconds