# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_ovo/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/ovo.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/ovo.fasta (Sat Feb 12 15:50:53 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c22n11.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.266 C 0.242 G 0.224 T 0.269


MOTIF TAACGGNA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    TAACGGNA   TNCCGTTA         62          2   1.9e-018   1.2e-014
#         TAACGGTA   TACCGTTA         38          2   1.9e-010   1.2e-006
#         TAACGGCA   TGCCGTTA         11          0   4.4e-004   2.8e+000
#         TAACGGAA   TTCCGTTA          9          0   1.8e-003   1.1e+001
#         TAACGGGA   TCCCGTTA          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 67 E= 1.2e-014
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.134328 0.164179 0.134328 0.567164
1.000000 0.000000 0.000000 0.000000


MOTIF ACCGTTAK DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCGTTAK   MTAACGGT         24          1   4.5e-007   2.7e-003
#         ACCGTTAG   CTAACGGT         16          1   1.1e-004   6.5e-001
#         ACCGTTAT   ATAACGGT          8          0   3.7e-003   2.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.7e-003
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.666667 0.333333


MOTIF CACACACA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CACACACA   TGTGTGTG          9          1   1.0e-002   5.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 9 E= 5.8e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AACGGTAA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACGGTAA   TTACCGTT          6          0   1.5e-002   8.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATAACGG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATAACGG   CCGTTATT          6          0   1.5e-002   8.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.6e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 2.70 seconds