# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_net/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/net.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/net.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n02.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.319 C 0.184 G 0.174 T 0.322


MOTIF AAAAAYAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAAYAA   TTRTTTTT         21          4   3.4e-004   2.1e+000
#         AAAAATAA   TTATTTTT         10          1   5.4e-003   3.3e+001
#         AAAAACAA   TTGTTTTT         14          3   5.7e-003   3.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 23 E= 2.1e+000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.565217 0.000000 0.434783
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CAAAGTCC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAAAGTCC   GGACTTTG          7          0   7.5e-003   4.6e+001
#         CAAAGTCC   GGACTTTG          7          0   7.5e-003   4.6e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.6e+001
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF ATAGAAAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATAGAAAT   ATTTCTAT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ATTTATGG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATTTATGG   CCATAAAT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAAGCAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGCAC   GTGCTTTT          4          0   6.2e-002   3.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.28 seconds