# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_modmdg4/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/modmdg4.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/modmdg4.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n04.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.309 C 0.191 G 0.182 T 0.317


MOTIF AAGTATGC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGTATGC   GCATACTT         55          0   9.8e-019   5.7e-015
#         AAGTATGC   GCATACTT         55          0   9.8e-019   5.7e-015

letter-probability matrix: alength= 4 w= 8 nsites= 55 E= 5.7e-015
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAAGTAK DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGTAK   MTACTTTT         21          0   3.1e-007   1.7e-003
#         AAAAGTAT   ATACTTTT         14          0   5.1e-005   2.9e-001
#         AAAAGTAG   CTACTTTT          7          0   7.5e-003   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 21 E= 1.7e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.333333 0.666667


MOTIF AAAATATT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATATT   AATATTTT          7          0   7.5e-003   4.2e+001
#         AAAATATT   AATATTTT          7          0   7.5e-003   4.2e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 4.2e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF CTGCATAC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTGCATAC   GTATGCAG          6          0   1.5e-002   8.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.4e+001
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GTTGCATA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GTTGCATA   TATGCAAC          6          0   1.5e-002   8.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.3e+001
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.22 seconds