# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_mirr/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/mirr.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/mirr.fasta (Sat Feb 12 15:50:52 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.293 C 0.205 G 0.213 T 0.289


MOTIF ATCTWATC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATCTWATC   GATWAGAT         24          0   3.3e-008   2.2e-004
#         ATCTTATC   GATAAGAT         16          0   1.2e-005   7.9e-002
#         ATCTAATC   GATTAGAT          8          0   3.7e-003   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.2e-004
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.333333 0.000000 0.000000 0.666667
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


MOTIF GCTTATCA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GCTTATCA   TGATAAGC          8          0   3.7e-003   2.4e+001
#         GCTTATCA   TGATAAGC          8          0   3.7e-003   2.4e+001

letter-probability matrix: alength= 4 w= 8 nsites= 8 E= 2.4e+001
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AGATACAT DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGATACAT   ATGTATCT          6          0   1.5e-002   9.7e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.7e+001
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAGGCAAT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGGCAAT   ATTGCCTT          5          0   3.1e-002   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF ACCGATAA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACCGATAA   TTATCGGT          5          0   3.1e-002   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.27 seconds