# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_lov/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/lov.fasta
#   positives: 28 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/lov.fasta (Sat Feb 12 15:50:51 EST 2022)
#   negatives: 28 from shuffled positives
#        host: c23n05.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.286 C 0.235 G 0.208 T 0.271


MOTIF CAACTGAC DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAACTGAC   GTCAGTTG          3          0   1.2e-001   1.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 1.0e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AACAAAAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AACAAAAC   GTTTTGTT          2          0   2.5e-001   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AATACGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATACGAA   TTCGTATT          2          0   2.5e-001   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATATTTA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATATTTA   TAAATATT          2          0   2.5e-001   2.0e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 2.0e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF ACGAACTG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACGAACTG   CAGTTCGT          2          0   2.5e-001   1.9e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 1.9e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.41 seconds