# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_kni/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/kni.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/kni.fasta (Sat Feb 12 15:50:51 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.275 C 0.232 G 0.228 T 0.265


MOTIF CAATAAAA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAATAAAA   TTTTATTG          5          0   3.1e-002   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.1e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCCAAAAG DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCCAAAAG   CTTTTGGG          5          0   3.1e-002   2.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.1e+002
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAACAGAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAACAGAA   TTCTGTTT          4          0   6.2e-002   4.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAGAAATG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAGAAATG   CATTTCTT          4          0   6.2e-002   4.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF ACATATAC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ACATATAC   GTATATGT          4          0   6.2e-002   4.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 4.1e+002
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.30 seconds