# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_kay/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/kay.fasta
#   positives: 99 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/kay.fasta (Sat Feb 12 15:50:51 EST 2022)
#   negatives: 99 from shuffled positives
#        host: c22n06.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:54 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.321 C 0.183 G 0.170 T 0.326


MOTIF AATTAATA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTAATA   TATTAATT          7          0   7.0e-003   1.8e+001
#         AATTAATA   TATTAATT          7          0   7.0e-003   1.8e+001

letter-probability matrix: alength= 4 w= 8 nsites= 7 E= 1.8e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AATTTTAT DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTTTAT   ATAAAATT          6          1   5.9e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAATAAAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATAAAG   CTTTATTT          4          0   6.1e-002   1.5e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 1.5e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAATTATT DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAATTATT   AATAATTT          5          1   1.1e-001   2.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 2.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000


MOTIF AAAAGTGT DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAGTGT   ACACTTTT          3          0   1.2e-001   3.1e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 3.1e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000


# Stopping reason: target motif count reached
#    Running time: 1.37 seconds