# DREME 5.3.3 # command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_jim/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/jim.fasta # positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/jim.fasta (Sat Feb 12 15:50:51 EST 2022) # negatives: 250 from shuffled positives # host: c23n02.farnam.hpc.yale.internal # when: Sat Feb 12 15:55:58 EST 2022 MEME version 5.3.3 ALPHABET "DNA" DNA-LIKE A "Adenine" CC0000 ~ T "Thymine" 008000 C "Cytosine" 0000CC ~ G "Guanine" FFB300 N "Any base" = ACGT X = ACGT . = ACGT V "Not T" = ACG H "Not G" = ACT D "Not C" = AGT B "Not A" = CGT M "Amino" = AC R "Purine" = AG W "Weak" = AT S "Strong" = CG Y "Pyrimidine" = CT K "Keto" = GT U = T END ALPHABET strands: + - Background letter frequencies (from dataset): A 0.275 C 0.219 G 0.225 T 0.281 MOTIF AAAAAAAA DREME-1 # Word RC Word Pos Neg P-value E-value # BEST AAAAAAAA TTTTTTTT 50 31 1.4e-002 8.2e+001 letter-probability matrix: alength= 4 w= 8 nsites= 52 E= 8.2e+001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AATAAAAA DREME-2 # Word RC Word Pos Neg P-value E-value # BEST AATAAAAA TTTTTATT 10 1 5.4e-003 3.1e+001 # AATAAAAA TTTTTATT 10 1 5.4e-003 3.1e+001 letter-probability matrix: alength= 4 w= 8 nsites= 11 E= 3.1e+001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF AACAACAA DREME-3 # Word RC Word Pos Neg P-value E-value # BEST AACAACAA TTGTTGTT 6 0 1.5e-002 8.5e+001 letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 8.5e+001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF CACACAAA DREME-4 # Word RC Word Pos Neg P-value E-value # BEST CACACAAA TTTGTGTG 5 0 3.1e-002 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 MOTIF TAAACAAA DREME-5 # Word RC Word Pos Neg P-value E-value # BEST TAAACAAA TTTGTTTA 5 0 3.1e-002 1.7e+002 letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.7e+002 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 # Stopping reason: target motif count reached # Running time: 1.31 seconds