# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_insv/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/insv.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/insv.fasta (Sat Feb 12 15:50:51 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c23n03.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:57 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.292 C 0.201 G 0.213 T 0.295


MOTIF AATTGGAV DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATTGGAV   BTCCAATT         43          1   3.9e-013   2.4e-009
#         AATTGGAA   TTCCAATT         32          0   8.1e-011   5.0e-007
#         AATTGGAC   GTCCAATT         11          1   2.9e-003   1.8e+001
#         AATTGGAG   CTCCAATT          8          0   3.7e-003   2.3e+001

letter-probability matrix: alength= 4 w= 8 nsites= 45 E= 2.4e-009
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.666667 0.200000 0.133333 0.000000


MOTIF AATMAGAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AATMAGAA   TTCTKATT         25          1   2.2e-007   1.4e-003
#         AATCAGAA   TTCTGATT         13          0   1.0e-004   6.3e-001
#         AATAAGAA   TTCTTATT         12          1   1.5e-003   9.3e+000

letter-probability matrix: alength= 4 w= 8 nsites= 25 E= 1.4e-003
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.480000 0.520000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CCAATCAG DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CCAATCAG   CTGATTGG          9          0   1.8e-003   1.1e+001
#         CCAATCAG   CTGATTGG          9          0   1.8e-003   1.1e+001

letter-probability matrix: alength= 4 w= 8 nsites= 10 E= 1.1e+001
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF CAATCCGA DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CAATCCGA   TCGGATTG          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF CTAATTAG DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    CTAATTAG   CTAATTAG          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.30 seconds