# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_h/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/h.fasta
#   positives: 64 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/h.fasta (Sat Feb 12 15:50:50 EST 2022)
#   negatives: 64 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:53 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.232 C 0.245 G 0.247 T 0.276


MOTIF ATGCTTTG DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    ATGCTTTG   CAAAGCAT          3          0   1.2e-001   2.4e+002

letter-probability matrix: alength= 4 w= 8 nsites= 3 E= 2.4e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AGCAGCAA DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AGCAGCAA   TTGCTGCT          4          1   1.8e-001   3.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 4 E= 3.6e+002
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAAATAA DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAAATAA   TTATTTTT          2          0   2.5e-001   4.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF AAAACAAG DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAACAAG   CTTGTTTT          2          0   2.5e-001   4.7e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.7e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000


MOTIF AAAGACTC DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAGACTC   GAGTCTTT          2          0   2.5e-001   4.6e+002

letter-probability matrix: alength= 4 w= 8 nsites= 2 E= 4.6e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 1.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 0.84 seconds