# DREME 5.3.3
#     command: dreme -oc ../result/final_prediction/fly/inference_raw/DREME/RankLinear4.0_20_gfzf/ -k 8 -m 5 -e 1000 -verbosity 1 -p ../result/final_prediction/fly/fasta/RankLinear4.0_20/gfzf.fasta
#   positives: 250 from ../result/final_prediction/fly/fasta/RankLinear4.0_20/gfzf.fasta (Sat Feb 12 15:50:50 EST 2022)
#   negatives: 250 from shuffled positives
#        host: c17n10.farnam.hpc.yale.internal
#        when: Sat Feb 12 15:55:52 EST 2022

MEME version 5.3.3

ALPHABET "DNA" DNA-LIKE
A "Adenine" CC0000 ~ T "Thymine" 008000
C "Cytosine" 0000CC ~ G "Guanine" FFB300
N "Any base" = ACGT
X = ACGT
. = ACGT
V "Not T" = ACG
H "Not G" = ACT
D "Not C" = AGT
B "Not A" = CGT
M "Amino" = AC
R "Purine" = AG
W "Weak" = AT
S "Strong" = CG
Y "Pyrimidine" = CT
K "Keto" = GT
U = T
END ALPHABET

strands: + -

Background letter frequencies (from dataset):
A 0.298 C 0.207 G 0.199 T 0.296


MOTIF AWATACCA DREME-1

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AWATACCA   TGGTATWT         34          0   1.7e-011   1.1e-007
#         AAATACCA   TGGTATTT         23          0   7.0e-008   4.4e-004
#         ATATACCA   TGGTATAT         11          0   4.4e-004   2.8e+000

letter-probability matrix: alength= 4 w= 8 nsites= 34 E= 1.1e-007
1.000000 0.000000 0.000000 0.000000
0.676471 0.000000 0.000000 0.323529
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


MOTIF GGTCACAC DREME-2

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    GGTCACAC   GTGTGACC         24          0   3.3e-008   2.1e-004
#         GGTCACAC   GTGTGACC         24          0   3.3e-008   2.1e-004

letter-probability matrix: alength= 4 w= 8 nsites= 24 E= 2.1e-004
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 1.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATACY DREME-3

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATACY   RGTATTTT         14          0   5.1e-005   3.0e-001
#         AAAATACT   AGTATTTT          8          0   3.7e-003   2.2e+001
#         AAAATACC   GGTATTTT          7          0   7.5e-003   4.5e+001

letter-probability matrix: alength= 4 w= 8 nsites= 16 E= 3.0e-001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 0.437500 0.000000 0.562500


MOTIF AAAATGCC DREME-4

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATGCC   GGCATTTT          6          0   1.5e-002   9.0e+001

letter-probability matrix: alength= 4 w= 8 nsites= 6 E= 9.0e+001
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
0.000000 0.000000 1.000000 0.000000
0.000000 1.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000


MOTIF AAAATACA DREME-5

#             Word    RC Word        Pos        Neg    P-value    E-value
# BEST    AAAATACA   TGTATTTT          5          0   3.1e-002   1.8e+002

letter-probability matrix: alength= 4 w= 8 nsites= 5 E= 1.8e+002
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000
0.000000 0.000000 0.000000 1.000000
1.000000 0.000000 0.000000 0.000000
0.000000 1.000000 0.000000 0.000000
1.000000 0.000000 0.000000 0.000000


# Stopping reason: target motif count reached
#    Running time: 1.26 seconds